View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17287_low_11 (Length: 548)
Name: NF17287_low_11
Description: NF17287
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17287_low_11 |
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Alignment Details
Target: chr7 (Bit Score: 384; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 14 - 533
Target Start/End: Original strand, 10712354 - 10712869
Alignment:
| Q |
14 |
cctgtggaattgggggcatcgatccaataatgatcctacatatttgttgatgtgacnnnnnnnntagtgttgacacta--attcttgcttcaagcttaat |
111 |
Q |
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| T |
10712354 |
cctgaggaattcggggcatcgatccaataatgatcctacatatttgttgatgtgacgaaaaaa-tagtgttgacactataattcttgcttcaagcttaat |
10712452 |
T |
|
| Q |
112 |
atatattatacatagatagatgggttctgcaggtgtaaaatcaaacataaatgacatttgaatgttaagctcttcaatcaattttattaattctctcaac |
211 |
Q |
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| T |
10712453 |
atatattatacata--tagatgggttctgcaggcgtaa--tcaaacgtgaatgacatttcaatgttcagctcttccatcaatttaattaattttctcaac |
10712548 |
T |
|
| Q |
212 |
tactcaacatttgaatttcaataataaaaattcaaatgataatgcacgaagtattattccaactcaaatcatgtataccattttacaattttacatacaa |
311 |
Q |
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| T |
10712549 |
tactcaacatttgaatttcaataataaaaattcaaatgataatgcacgaagtattattccaactcaaatcatgtataccattt-acaattttacatacaa |
10712647 |
T |
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| Q |
312 |
acagcaaatctcagattcatttaaccctcatgctttagaaattgaggggttgtggtgcagattacaagagaattttcctgtcagcaatatgcatacagtc |
411 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
10712648 |
acagaaaatctcagattcatttaaccctcatgctttagaaattgaggggttgtggtgcagattacaagagaattttcctgtcagcaatatgcatacagac |
10712747 |
T |
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| Q |
412 |
ttgaatctgcaggtgaaagaagcaatttgacaaagaacaaccactgaaatttgtggaccctgtcattgaaaagttagaaaaattagcattcaatgattta |
511 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||| |||||| |
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| T |
10712748 |
ttgaatctgcaggtgaaagatgcaatttgacaaagaacaaccactgaaatttgtggaccctgtcatggtaaagttagaaaaattagcattcaacgattta |
10712847 |
T |
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| Q |
512 |
aatttgggaaaggttgatactt |
533 |
Q |
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| T |
10712848 |
actttgggaaaggttgatactt |
10712869 |
T |
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