View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17287_low_13 (Length: 546)
Name: NF17287_low_13
Description: NF17287
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17287_low_13 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 511; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 511; E-Value: 0
Query Start/End: Original strand, 15 - 541
Target Start/End: Complemental strand, 5351134 - 5350608
Alignment:
| Q |
15 |
caaaggaaaaagtcaagaaatagaaagagttagtgatcctgctactaagaaaaacaacaatgacgaaatatgtgagacaattatcggagggcaacaactt |
114 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||| |||||||||||| |
|
|
| T |
5351134 |
caaaggaaaaagtcaagaaatagaaagagttagtgatcctgctactaagaaaaacaacaatgatgaaatatgtgagacaagtatcggcgggcaacaactt |
5351035 |
T |
|
| Q |
115 |
actcaagaagaatatatagaaattggaagttctggatgggaactgtacttggattacattataatctccaagggaatgcttcttcagtttttaagcttaa |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5351034 |
actcaagaagaatatatagaaattggaagttctggatgggaactgtacttggattacattataatctccaagggaatgcttcttcagtttttaagcttaa |
5350935 |
T |
|
| Q |
215 |
tagcattgttaggttttgctgctttttcagctggtgcatcttattggattgctctatcaagtgaatttccaagcatcactaaaggctggatggttggagt |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5350934 |
tagcattgttaggttttgctgctttttcagctggtgcatcttattggattgctctatcaagtgaatttccaagcatcactaaaggctggatggttggagt |
5350835 |
T |
|
| Q |
315 |
ttacactgcaatgtcaattcttagtgctatttttgcttacttgaggtctgtattggtagcccatcttggactaaaggcttctaaagaatttttctcaggt |
414 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5350834 |
ttacactgcaatgtcaattcttagtgctatttttgcttacttgaggtctgtattggtagcccatcttggactaaaggcttctaaagaatttttctcaggt |
5350735 |
T |
|
| Q |
415 |
ttcacatcttccattttcaatgctcccatgtcattctttgattcaacacctgttggaagaattttgactagagtaagttgtattgttcatatatgtctgc |
514 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5350734 |
ttcacttcttccattttcaatgctcccatgtcattctttgattcaacacctgttggaagaattttgactagagtaagttgtattgttcatatatgtctgc |
5350635 |
T |
|
| Q |
515 |
tagattagactagggaactcaaattgt |
541 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
5350634 |
tagattagactagggaactcaaattgt |
5350608 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 430 - 491
Target Start/End: Complemental strand, 5289393 - 5289332
Alignment:
| Q |
430 |
ttcaatgctcccatgtcattctttgattcaacacctgttggaagaattttgactagagtaag |
491 |
Q |
| |
|
||||||||||| ||| |||||||||||||| ||||||||||| |||||||| |||||||| |
|
|
| T |
5289393 |
ttcaatgctccgatgcttttctttgattcaactcctgttggaaggattttgacaagagtaag |
5289332 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 430 - 491
Target Start/End: Complemental strand, 14948598 - 14948537
Alignment:
| Q |
430 |
ttcaatgctcccatgtcattctttgattcaacacctgttggaagaattttgactagagtaag |
491 |
Q |
| |
|
||||||||||| ||| |||||||||||||| ||||| ||||||||||| ||||||||||| |
|
|
| T |
14948598 |
ttcaatgctccaatgcttttctttgattcaactcctgtgggaagaattttaactagagtaag |
14948537 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 430 - 491
Target Start/End: Original strand, 15126754 - 15126815
Alignment:
| Q |
430 |
ttcaatgctcccatgtcattctttgattcaacacctgttggaagaattttgactagagtaag |
491 |
Q |
| |
|
||||||||||| ||| |||||||||||||| ||||| ||||||||||| ||||||||||| |
|
|
| T |
15126754 |
ttcaatgctccaatgcttttctttgattcaactcctgtaggaagaattttaactagagtaag |
15126815 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University