View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17287_low_15 (Length: 527)
Name: NF17287_low_15
Description: NF17287
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17287_low_15 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 463; Significance: 0; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 463; E-Value: 0
Query Start/End: Original strand, 1 - 510
Target Start/End: Original strand, 31894480 - 31894992
Alignment:
| Q |
1 |
acacgaagtaatatcttaagtggtttgtttatcggttgtgtcggtgtacttgttatgtattatcttacttgcaagt--ccacatctgcttatgtttcaca |
98 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
31894480 |
acacgaagtaatatcttaagtggtttgtttatcggttgtgtcggtgtacttgttatgtattatcttacttgcaagtgtccacatctgcttatgtttcaca |
31894579 |
T |
|
| Q |
99 |
attcctaaaaatgtcatcgttttatatatcgactctaaacagaggcaatgagacacagggaagggtcgatgcgttgtcagtggaggcaagactggatgct |
198 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31894580 |
attcctaaaaatgccatcgttttatatatcgactctaaacagaggcaatgagacacagggaagggtcgatgcgttgtcagtggaggcaagactggatgct |
31894679 |
T |
|
| Q |
199 |
ggttctgccaattcagaccaaaaggnnnnnnnnn-atctttctttatttgattttgttctaatgaaagcttatttgattttgttctctaatgaaaactca |
297 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31894680 |
ggttctgccaattcagaccaaaaggttttttttttatctttctttatttgattttgttctaatgaaagcttatttgattttgttctctaatgaaaactca |
31894779 |
T |
|
| Q |
298 |
ttaccttttttctagttaactttgaccttgtaatattgtgattagggtgcaaataatattgcaaaacgttctcaagaaaggataggaagtgcattcacac |
397 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31894780 |
ttaccttttttctagttaactttgaccttgtaatattgtgattagggtgcaaataatattgcaaaacgttctcaagaaaggataggaagtgcattcacac |
31894879 |
T |
|
| Q |
398 |
gaaacagtttacctcaagattttgatgatcaagagatattgtatgaaacttgcactgtttctaatgcatcacaattattggttttggcacccaagttgca |
497 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31894880 |
gaaacagtttacctcaagattttgatgatcaagagatattgtatgaaacttgcactgtttctaatgcatcacaattattggttttggcacccaagttgca |
31894979 |
T |
|
| Q |
498 |
gagcctaagaatt |
510 |
Q |
| |
|
||||||||||||| |
|
|
| T |
31894980 |
gagcctaagaatt |
31894992 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 463; E-Value: 0
Query Start/End: Original strand, 1 - 510
Target Start/End: Original strand, 31899064 - 31899576
Alignment:
| Q |
1 |
acacgaagtaatatcttaagtggtttgtttatcggttgtgtcggtgtacttgttatgtattatcttacttgcaagt--ccacatctgcttatgtttcaca |
98 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
31899064 |
acacgaagtaatatcttaagtggtttgtttatcggttgtgtcggtgtacttgttatgtattatcttacttgcaagtgtccacatctgcttatgtttcaca |
31899163 |
T |
|
| Q |
99 |
attcctaaaaatgtcatcgttttatatatcgactctaaacagaggcaatgagacacagggaagggtcgatgcgttgtcagtggaggcaagactggatgct |
198 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31899164 |
attcctaaaaatgccatcgttttatatatcgactctaaacagaggcaatgagacacagggaagggtcgatgcgttgtcagtggaggcaagactggatgct |
31899263 |
T |
|
| Q |
199 |
ggttctgccaattcagaccaaaaggnnnnnnnnn-atctttctttatttgattttgttctaatgaaagcttatttgattttgttctctaatgaaaactca |
297 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31899264 |
ggttctgccaattcagaccaaaaggttttttttttatctttctttatttgattttgttctaatgaaagcttatttgattttgttctctaatgaaaactca |
31899363 |
T |
|
| Q |
298 |
ttaccttttttctagttaactttgaccttgtaatattgtgattagggtgcaaataatattgcaaaacgttctcaagaaaggataggaagtgcattcacac |
397 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31899364 |
ttaccttttttctagttaactttgaccttgtaatattgtgattagggtgcaaataatattgcaaaacgttctcaagaaaggataggaagtgcattcacac |
31899463 |
T |
|
| Q |
398 |
gaaacagtttacctcaagattttgatgatcaagagatattgtatgaaacttgcactgtttctaatgcatcacaattattggttttggcacccaagttgca |
497 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31899464 |
gaaacagtttacctcaagattttgatgatcaagagatattgtatgaaacttgcactgtttctaatgcatcacaattattggttttggcacccaagttgca |
31899563 |
T |
|
| Q |
498 |
gagcctaagaatt |
510 |
Q |
| |
|
||||||||||||| |
|
|
| T |
31899564 |
gagcctaagaatt |
31899576 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 463; E-Value: 0
Query Start/End: Original strand, 1 - 510
Target Start/End: Original strand, 31914773 - 31915285
Alignment:
| Q |
1 |
acacgaagtaatatcttaagtggtttgtttatcggttgtgtcggtgtacttgttatgtattatcttacttgcaagt--ccacatctgcttatgtttcaca |
98 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
31914773 |
acacgaagtaatatcttaagtggtttgtttatcggttgtgtcggtgtacttgttatgtattatcttacttgcaagtgtccacatctgcttatgtttcaca |
31914872 |
T |
|
| Q |
99 |
attcctaaaaatgtcatcgttttatatatcgactctaaacagaggcaatgagacacagggaagggtcgatgcgttgtcagtggaggcaagactggatgct |
198 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31914873 |
attcctaaaaatgccatcgttttatatatcgactctaaacagaggcaatgagacacagggaagggtcgatgcgttgtcagtggaggcaagactggatgct |
31914972 |
T |
|
| Q |
199 |
ggttctgccaattcagaccaaaaggnnnnnnnnn-atctttctttatttgattttgttctaatgaaagcttatttgattttgttctctaatgaaaactca |
297 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31914973 |
ggttctgccaattcagaccaaaaggttttttttttatctttctttatttgattttgttctaatgaaagcttatttgattttgttctctaatgaaaactca |
31915072 |
T |
|
| Q |
298 |
ttaccttttttctagttaactttgaccttgtaatattgtgattagggtgcaaataatattgcaaaacgttctcaagaaaggataggaagtgcattcacac |
397 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31915073 |
ttaccttttttctagttaactttgaccttgtaatattgtgattagggtgcaaataatattgcaaaacgttctcaagaaaggataggaagtgcattcacac |
31915172 |
T |
|
| Q |
398 |
gaaacagtttacctcaagattttgatgatcaagagatattgtatgaaacttgcactgtttctaatgcatcacaattattggttttggcacccaagttgca |
497 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31915173 |
gaaacagtttacctcaagattttgatgatcaagagatattgtatgaaacttgcactgtttctaatgcatcacaattattggttttggcacccaagttgca |
31915272 |
T |
|
| Q |
498 |
gagcctaagaatt |
510 |
Q |
| |
|
||||||||||||| |
|
|
| T |
31915273 |
gagcctaagaatt |
31915285 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 463; E-Value: 0
Query Start/End: Original strand, 1 - 510
Target Start/End: Original strand, 31948421 - 31948933
Alignment:
| Q |
1 |
acacgaagtaatatcttaagtggtttgtttatcggttgtgtcggtgtacttgttatgtattatcttacttgcaagt--ccacatctgcttatgtttcaca |
98 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
31948421 |
acacgaagtaatatcttaagtggtttgtttatcggttgtgtcggtgtacttgttatgtattatcttacttgcaagtgtccacatctgcttatgtttcaca |
31948520 |
T |
|
| Q |
99 |
attcctaaaaatgtcatcgttttatatatcgactctaaacagaggcaatgagacacagggaagggtcgatgcgttgtcagtggaggcaagactggatgct |
198 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31948521 |
attcctaaaaatgccatcgttttatatatcgactctaaacagaggcaatgagacacagggaagggtcgatgcgttgtcagtggaggcaagactggatgct |
31948620 |
T |
|
| Q |
199 |
ggttctgccaattcagaccaaaaggnnnnnnnnn-atctttctttatttgattttgttctaatgaaagcttatttgattttgttctctaatgaaaactca |
297 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31948621 |
ggttctgccaattcagaccaaaaggttttttttttatctttctttatttgattttgttctaatgaaagcttatttgattttgttctctaatgaaaactca |
31948720 |
T |
|
| Q |
298 |
ttaccttttttctagttaactttgaccttgtaatattgtgattagggtgcaaataatattgcaaaacgttctcaagaaaggataggaagtgcattcacac |
397 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31948721 |
ttaccttttttctagttaactttgaccttgtaatattgtgattagggtgcaaataatattgcaaaacgttctcaagaaaggataggaagtgcattcacac |
31948820 |
T |
|
| Q |
398 |
gaaacagtttacctcaagattttgatgatcaagagatattgtatgaaacttgcactgtttctaatgcatcacaattattggttttggcacccaagttgca |
497 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31948821 |
gaaacagtttacctcaagattttgatgatcaagagatattgtatgaaacttgcactgtttctaatgcatcacaattattggttttggcacccaagttgca |
31948920 |
T |
|
| Q |
498 |
gagcctaagaatt |
510 |
Q |
| |
|
||||||||||||| |
|
|
| T |
31948921 |
gagcctaagaatt |
31948933 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 455; E-Value: 0
Query Start/End: Original strand, 1 - 510
Target Start/End: Complemental strand, 31683952 - 31683440
Alignment:
| Q |
1 |
acacgaagtaatatcttaagtggtttgtttatcggttgtgtcggtgtacttgttatgtattatcttacttgcaagt--ccacatctgcttatgtttcaca |
98 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
31683952 |
acacgaagtaatatcttaagtggtttgtttatcggttgtgtcggtgtacttgttatgtattatcttacttgcaagtgtccacatctgcttatgtttcaca |
31683853 |
T |
|
| Q |
99 |
attcctaaaaatgtcatcgttttatatatcgactctaaacagaggcaatgagacacagggaagggtcgatgcgttgtcagtggaggcaagactggatgct |
198 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31683852 |
attcctaaaaatgccatcgttttatatatcgactctaaacagaggcaatgagacacagggaagggtcgatgcgttgtcagtggaggcaagactggatgct |
31683753 |
T |
|
| Q |
199 |
ggttctgccaattcagaccaaaaggnnnnnnnnn-atctttctttatttgattttgttctaatgaaagcttatttgattttgttctctaatgaaaactca |
297 |
Q |
| |
|
||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31683752 |
ggttctgccaattcagaccaaaaggttttttttttatctttccttatttgattttgttctaatgaaagcttatttgattttgttctctaatgaaaactca |
31683653 |
T |
|
| Q |
298 |
ttaccttttttctagttaactttgaccttgtaatattgtgattagggtgcaaataatattgcaaaacgttctcaagaaaggataggaagtgcattcacac |
397 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31683652 |
ttaccttttttctagttaactttgaccttgtaatattgtgattagggtgcaaataatattgcaaaacgttctcaagaaaggataggaagtgcattcacac |
31683553 |
T |
|
| Q |
398 |
gaaacagtttacctcaagattttgatgatcaagagatattgtatgaaacttgcactgtttctaatgcatcacaattattggttttggcacccaagttgca |
497 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
31683552 |
gaaacagtttacctcaagattttgatgatcaagagatattgtatgaaacttgcactgtttctaatgcatcacaattatcggttttggcacccaagttgca |
31683453 |
T |
|
| Q |
498 |
gagcctaagaatt |
510 |
Q |
| |
|
||||||||||||| |
|
|
| T |
31683452 |
gagcctaagaatt |
31683440 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 266 - 364
Target Start/End: Complemental strand, 52652785 - 52652686
Alignment:
| Q |
266 |
cttatttgattttgttctctaatgaaaactcattaccttttttc-tagttaactttgaccttgtaatattgtgattagggtgcaaataatattgcaaaac |
364 |
Q |
| |
|
||||||||||||||||||||||| ||| ||||| ||||| | | |||||||||||||||| ||| || ||||||| |||||| |||||| ||||||| |
|
|
| T |
52652785 |
cttatttgattttgttctctaataaaagttcattttcttttctagttgttaactttgaccttgcaatgttttgattagtgtgcaagtaatatagcaaaac |
52652686 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University