View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17287_low_16 (Length: 514)
Name: NF17287_low_16
Description: NF17287
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17287_low_16 |
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Alignment Details
Target: chr2 (Bit Score: 370; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 129 - 498
Target Start/End: Complemental strand, 41823401 - 41823032
Alignment:
| Q |
129 |
cactgtgattgggtgaaggccaaacatcttcacgaaattttaggtactagtcgtagcagtctaagactatagtggaaattaggccccacattaacatatt |
228 |
Q |
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| T |
41823401 |
cactgtgattgggtgaaggccaaacatcttcacgaaattttaggtactagtcgtagcagtctaagactatagtggaaattaggccccacattaacatatt |
41823302 |
T |
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| Q |
229 |
tgtggacacctttttcgtctcaaacaagtccaatgttgttttgttttgttgcaaccttaaagacgtttctgattatgttctagactaaactgttttctat |
328 |
Q |
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| T |
41823301 |
tgtggacacctttttcgtctcaaacaagtccaatgttgttttgttttgttgcaaccttaaagacgtttctgattatgttctagactaaactgttttctat |
41823202 |
T |
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| Q |
329 |
ttattcactctagcatcacacctttctcatgttattcctttcttctctcagattattgcagattttacatgcttttcacctgttaatttcagttgagtcc |
428 |
Q |
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| T |
41823201 |
ttattcactctagcatcacacctttctcatgttattcctttcttctctcagattattgcagattttacatgcttttcacctgttaatttcagttgagtcc |
41823102 |
T |
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| Q |
429 |
ttccattgatttcatagctagagtttggagtttcaaaaccttgagttactgttatttttcacatgctttt |
498 |
Q |
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| T |
41823101 |
ttccattgatttcatagctagagtttggagtttcaaaaccttgagttactgttatttttcacatgctttt |
41823032 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 13 - 87
Target Start/End: Complemental strand, 41823522 - 41823445
Alignment:
| Q |
13 |
aatattcaaatataccgtcaccacatacattttgaac---tagcaattcatggcacagaacaagtaaatgaagatacg |
87 |
Q |
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| T |
41823522 |
aatattcaaatataccgtcaccacatacattttgaactagtagcaattcatggcacagaagaagtaaatgaagatacg |
41823445 |
T |
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