View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17287_low_22 (Length: 457)

Name: NF17287_low_22
Description: NF17287
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17287_low_22
NF17287_low_22
[»] chr6 (11 HSPs)
chr6 (1-438)||(6921305-6921742)
chr6 (11-431)||(6947845-6948265)
chr6 (17-437)||(6935189-6935597)
chr6 (1-438)||(6942922-6943334)
chr6 (11-433)||(6954484-6954906)
chr6 (46-264)||(20770502-20770720)
chr6 (36-105)||(17369675-17369744)
chr6 (50-120)||(14749393-14749463)
chr6 (48-126)||(24254428-24254506)
chr6 (189-261)||(24950272-24950344)
chr6 (52-116)||(24950150-24950214)
[»] chr7 (59 HSPs)
chr7 (21-438)||(1985930-1986350)
chr7 (46-269)||(13416911-13417146)
chr7 (36-299)||(15571885-15572163)
chr7 (36-169)||(18514777-18514910)
chr7 (36-117)||(14076677-14076758)
chr7 (36-117)||(14386705-14386786)
chr7 (193-269)||(14076542-14076618)
chr7 (193-269)||(14386570-14386646)
chr7 (34-164)||(19344563-19344693)
chr7 (46-115)||(660847-660916)
chr7 (47-142)||(19604464-19604559)
chr7 (53-126)||(22021382-22021455)
chr7 (46-154)||(6864807-6864914)
chr7 (47-131)||(29867221-29867305)
chr7 (48-122)||(22028622-22028696)
chr7 (46-116)||(29454103-29454173)
chr7 (47-105)||(29881267-29881325)
chr7 (48-116)||(12819918-12819986)
chr7 (48-120)||(19351071-19351143)
chr7 (46-142)||(20058057-20058153)
chr7 (46-122)||(20352089-20352165)
chr7 (46-122)||(22063636-22063712)
chr7 (46-142)||(22100467-22100563)
chr7 (46-110)||(29874517-29874581)
chr7 (33-116)||(29921980-29922063)
chr7 (183-269)||(18514945-18515031)
chr7 (69-126)||(9807814-9807871)
chr7 (47-120)||(18952906-18952979)
chr7 (47-120)||(18982953-18983026)
chr7 (47-120)||(18997599-18997672)
chr7 (378-438)||(15572242-15572302)
chr7 (47-123)||(20338917-20338993)
chr7 (189-257)||(24385051-24385119)
chr7 (38-117)||(22070110-22070189)
chr7 (205-252)||(24391269-24391316)
chr7 (50-141)||(36263028-36263119)
chr7 (48-126)||(19325987-19326065)
chr7 (46-116)||(19637217-19637287)
chr7 (36-122)||(20374493-20374579)
chr7 (46-116)||(29859454-29859524)
chr7 (47-116)||(29106814-29106883)
chr7 (46-131)||(29431001-29431086)
chr7 (53-122)||(29445663-29445732)
chr7 (62-158)||(15443922-15444018)
chr7 (48-120)||(19357906-19357978)
chr7 (48-116)||(19722018-19722086)
chr7 (66-122)||(22080862-22080918)
chr7 (48-116)||(29899374-29899442)
chr7 (46-105)||(19645630-19645689)
chr7 (50-141)||(36260228-36260319)
chr7 (50-124)||(13888098-13888172)
chr7 (224-278)||(16839559-16839613)
chr7 (48-94)||(19374778-19374824)
chr7 (50-116)||(21218712-21218778)
chr7 (36-114)||(24002201-24002279)
chr7 (62-159)||(26256732-26256829)
chr7 (62-158)||(15508704-15508800)
chr7 (69-105)||(20133340-20133376)
chr7 (69-105)||(20140841-20140877)
[»] chr4 (19 HSPs)
chr4 (37-159)||(53774797-53774919)
chr4 (46-159)||(3565701-3565814)
chr4 (46-122)||(11970982-11971058)
chr4 (46-122)||(3557720-3557796)
chr4 (46-122)||(11981683-11981759)
chr4 (46-154)||(3560958-3561066)
chr4 (46-159)||(8443454-8443567)
chr4 (50-123)||(837769-837842)
chr4 (51-117)||(35767017-35767083)
chr4 (45-122)||(6372439-6372516)
chr4 (47-116)||(53430100-53430169)
chr4 (218-267)||(53774701-53774750)
chr4 (46-110)||(1686285-1686349)
chr4 (47-122)||(6392815-6392893)
chr4 (48-92)||(53790577-53790621)
chr4 (46-105)||(6113090-6113149)
chr4 (84-159)||(10475164-10475239)
chr4 (86-159)||(10464226-10464299)
chr4 (40-116)||(10468042-10468118)
[»] chr5 (7 HSPs)
chr5 (36-269)||(18964820-18965056)
chr5 (48-159)||(29647633-29647744)
chr5 (48-122)||(29597554-29597628)
chr5 (48-127)||(29642348-29642427)
chr5 (47-122)||(24330900-24330975)
chr5 (65-114)||(23086784-23086833)
chr5 (53-121)||(28763912-28763980)
[»] chr2 (12 HSPs)
chr2 (36-142)||(14514874-14514980)
chr2 (48-122)||(18908811-18908885)
chr2 (48-122)||(18920767-18920841)
chr2 (48-121)||(18913559-18913632)
chr2 (46-121)||(554471-554546)
chr2 (62-117)||(20975557-20975612)
chr2 (204-269)||(20712691-20712756)
chr2 (62-116)||(25698507-25698561)
chr2 (204-269)||(14514730-14514795)
chr2 (214-271)||(20967545-20967602)
chr2 (46-118)||(25377072-25377144)
chr2 (227-269)||(20699621-20699663)
[»] chr1 (9 HSPs)
chr1 (45-116)||(4570927-4570998)
chr1 (45-117)||(50645484-50645556)
chr1 (47-122)||(21855384-21855459)
chr1 (47-113)||(4014966-4015032)
chr1 (46-116)||(39379061-39379131)
chr1 (47-116)||(10218985-10219054)
chr1 (46-111)||(15961233-15961298)
chr1 (45-116)||(17560772-17560843)
chr1 (47-109)||(4016773-4016835)
[»] chr3 (4 HSPs)
chr3 (46-110)||(3625740-3625804)
chr3 (46-118)||(25901279-25901351)
chr3 (46-118)||(25915297-25915369)
chr3 (65-121)||(3837904-3837960)
[»] scaffold0354 (1 HSPs)
scaffold0354 (36-105)||(7474-7543)
[»] scaffold0867 (1 HSPs)
scaffold0867 (46-142)||(4669-4765)
[»] chr8 (7 HSPs)
chr8 (36-134)||(27618473-27618571)
chr8 (62-114)||(29390288-29390340)
chr8 (82-122)||(42846461-42846501)
chr8 (62-114)||(11338592-11338644)
chr8 (62-114)||(11339435-11339487)
chr8 (62-114)||(11345117-11345169)
chr8 (47-91)||(29157073-29157117)
[»] scaffold0097 (1 HSPs)
scaffold0097 (204-269)||(16530-16595)
[»] scaffold0242 (2 HSPs)
scaffold0242 (53-122)||(13737-13806)
scaffold0242 (53-122)||(22572-22641)
[»] scaffold0267 (1 HSPs)
scaffold0267 (65-121)||(13385-13441)


Alignment Details
Target: chr6 (Bit Score: 430; Significance: 0; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 430; E-Value: 0
Query Start/End: Original strand, 1 - 438
Target Start/End: Original strand, 6921305 - 6921742
Alignment:
Q  1 atcattatataactcctgagttttaaaatcgtttagaagattcgtataactaattttaaggaattgagtccaagattcttcaactccaaattccttcatt 100  Q
    ||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6921305 atcattatataactccttagttttaaaattgtttagaagattcgtataactaattttaaggaattgagtccaagattcttcaactccaaattccttcatt 6921404  T
Q  101 tgccagataacaaaatgggttttcttagaatcataagaaaaatagaggcaatccatcaatacagaaagagttggaacattatgtagctcttcatcacaac 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6921405 tgccagataacaaaatgggttttcttagaatcataagaaaaatagaggcaatccatcaatacagaaagagttggaacattatgtagctcttcatcacaac 6921504  T
Q  201 atcgagggagcaacaattgtgtatatgtctctgtccccaaatcaagtgagatcatcacaaattgttcaacaataagatttttcaaatgacaataatatct 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6921505 atcgagggagcaacaattgtgtatatgtctctgtccccaaatcaagtgagatcatcacaaattgttcaacaataagatttttcaaatgacaataatatct 6921604  T
Q  301 gcaacgaacacaccaactaacactacttttcaaataaacgccatttcgcacatacttaccaaaaggatgacgcaccaataccacaggcaaacaatcaatg 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6921605 gcaacgaacacaccaactaacactacttttcaaataaacgccatttcgcacatacttaccaaaaggatgacgcaccaataccacaggcaaacaatcaatg 6921704  T
Q  401 tctctccaatcattatcacccaaagtaaaaactcttac 438  Q
    ||||||||||||||||||||||||||||||||||||||    
T  6921705 tctctccaatcattatcacccaaagtaaaaactcttac 6921742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 11 - 431
Target Start/End: Original strand, 6947845 - 6948265
Alignment:
Q  11 aactcctgagttttaaaatcgtttagaagattcgtataactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataa 110  Q
    ||||| ||| |||||| ||| ||| ||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||    
T  6947845 aactcatgaattttaatatcttttggaagattcacataactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccaaagaa 6947944  T
Q  111 caaaatgggttttcttagaatcataagaaaaatagaggcaatccatcaatacagaaagagttggaacattatgtagctcttcatcacaacatcgagggag 210  Q
    |||| |||||||||||  ||||||  |||||| | |||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  6947945 caaagtgggttttcttgaaatcatgtgaaaaacaaaggcaatccatcaacacagaaagagttggaacatcatgtagctcttcatcacaacatcgagggag 6948044  T
Q  211 caacaattgtgtatatgtctctgtccccaaatcaagtgagatcatcacaaattgttcaacaataagatttttcaaatgacaataatatctgcaacgaaca 310  Q
    ||||||  |||||||| ||||||||||||||||||||||||||||||||| ||||||||| |||||||| ||||||||||||||||||| |  |||||||    
T  6948045 caacaaccgtgtatatctctctgtccccaaatcaagtgagatcatcacaagttgttcaaccataagattcttcaaatgacaataatatcggtgacgaaca 6948144  T
Q  311 caccaactaacactacttttcaaataaacgccatttcgcacatacttaccaaaaggatgacgcaccaataccacaggcaaacaatcaatgtctctccaat 410  Q
    |||||||||| |||||| ||||||||||| || | || ||||||||||||||||||||||| ||||| ||||||||||||||||||||| ||||||||||    
T  6948145 caccaactaatactactattcaaataaacaccgtctctcacatacttaccaaaaggatgactcaccactaccacaggcaaacaatcaatttctctccaat 6948244  T
Q  411 cattatcacccaaagtaaaaa 431  Q
    |||||||||||||||||||||    
T  6948245 cattatcacccaaagtaaaaa 6948265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 17 - 437
Target Start/End: Original strand, 6935189 - 6935597
Alignment:
Q  17 tgagttttaaaatcgtttagaagattcgtataactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaat 116  Q
    |||||||||||||| | | ||||||| |||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||| |||||| |||    
T  6935189 tgagttttaaaatcttgttgaagattggtataactaattttaaggaatttagtccaagattcttgaactccaaattccttcatttgccaaataacataat 6935288  T
Q  117 gggttttcttagaatcataagaaaaatagaggcaatccatcaatacagaaagagttggaacattatgtagctcttcatcacaacatcgagggagcaacaa 216  Q
    ||||||||||| |||||||||||||||||||||||||||||||| |||||||||| ||||    ||||||||||||||||||||||||||||||||||||    
T  6935289 gggttttcttaaaatcataagaaaaatagaggcaatccatcaatccagaaagagtaggaaagccatgtagctcttcatcacaacatcgagggagcaacaa 6935388  T
Q  217 ttgtgtatatgtctctgtccccaaatcaagtgagatcatcacaaattgttcaacaataagatttttcaaatgacaataatatctgcaacgaacacaccaa 316  Q
    || |||| |||||||||||||||||||||||||||||||||| |||||||| ||  ||||||| ||||||||||||| ||||| | ||||||||||||||    
T  6935389 ttttgtacatgtctctgtccccaaatcaagtgagatcatcacgaattgttcgactgtaagattcttcaaatgacaattatatcggtaacgaacacaccaa 6935488  T
Q  317 ctaacactacttttcaaataaacgccatttcgcacatacttaccaaaaggatgacgcaccaataccacaggcaaacaatcaatgtctctccaatcattat 416  Q
    |||| |||||||||||||||||| ||||||  ||||| |            || | ||||||| ||||  ||||||||||||||||||||||||||||||    
T  6935489 ctaatactacttttcaaataaacaccatttttcacattc------------tggcacaccaatgccacttgcaaacaatcaatgtctctccaatcattat 6935576  T
Q  417 cacccaaagtaaaaactctta 437  Q
    |||||||||||||||||||||    
T  6935577 cacccaaagtaaaaactctta 6935597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 438
Target Start/End: Original strand, 6942922 - 6943334
Alignment:
Q  1 atcattatataactcctgagttttaaaatcgtttagaagattcgtataactaattttaaggaattgagtccaagattcttcaactccaaattccttcatt 100  Q
    ||||||||| ||||||||| |||||||||||||||||||||| ||||| ||||||||||||||||| ||| |||||||||||||||||||||||||||||    
T  6942922 atcattatagaactcctgaattttaaaatcgtttagaagatttgtatatctaattttaaggaattgcgtctaagattcttcaactccaaattccttcatt 6943021  T
Q  101 tgccagataacaaaatgggttttcttagaatcataagaaaaatagaggcaatccatcaatacagaaagagttggaacattatgtagctcttcatcacaac 200  Q
    ||| | |||||||||| |||||||||| ||||||||||||||||||||||||||||             || |||| || ||||||||||||||||||||    
T  6943022 tgctaaataacaaaataggttttcttaaaatcataagaaaaatagaggcaatccat-------------gtaggaaaatcatgtagctcttcatcacaac 6943108  T
Q  201 atcgagggagcaacaattgtgtatatgtctctgtccccaaatcaagtgagatcatcacaaattgttcaacaataagatttttcaaatgacaataatatct 300  Q
    || ||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||  ||||||| ||||||||||||| |||||     
T  6943109 attgagggagcaacaattttgtatatgtctctgtccccaaatcaagtgagatcatcacgaattgttcaactgtaagattcttcaaatgacaattatatcg 6943208  T
Q  301 gcaacgaacacaccaactaacactacttttcaaataaacgccatttcgcacatacttaccaaaaggatgacgcaccaataccacaggcaaacaatcaatg 400  Q
    |  ||||||||||||||||| |||||||||||||||||| ||||||  ||||| |            |||| ||||||| ||||| ||||||||||||||    
T  6943209 gtgacgaacacaccaactaatactacttttcaaataaacaccatttttcacattc------------tgacacaccaatgccacatgcaaacaatcaatg 6943296  T
Q  401 tctctccaatcattatcacccaaagtaaaaactcttac 438  Q
    ||||||||||||||||||||||||||||||||||||||    
T  6943297 tctctccaatcattatcacccaaagtaaaaactcttac 6943334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 11 - 433
Target Start/End: Original strand, 6954484 - 6954906
Alignment:
Q  11 aactcctgagttttaaaatcgtttagaagattcgtataactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataa 110  Q
    ||||||||| |||||||||| ||||||||| ||| | ||||||||||||  |||||||||||||||||||||||||||||||||||||||||||| ||||    
T  6954484 aactcctgacttttaaaatcttttagaagaatcggaaaactaattttaatcaattgagtccaagattcttcaactccaaattccttcatttgccaaataa 6954583  T
Q  111 caaaatgggttttcttagaatcataagaaaaatagaggcaatccatcaatacagaaagagttggaacattatgtagctcttcatcacaacatcgagggag 210  Q
    ||||||||||||| ||  |||||||||| ||| |||||||||||||||||||||||||||||| | ||     ||||||||||||||||||||| |||||    
T  6954584 caaaatgggttttgttgaaatcataagataaacagaggcaatccatcaatacagaaagagttgcagcaccggttagctcttcatcacaacatcgggggag 6954683  T
Q  211 caacaattgtgtatatgtctctgtccccaaatcaagtgagatcatcacaaattgttcaacaataagatttttcaaatgacaataatatctgcaacgaaca 310  Q
    |||||| ||||||||||||||||||| || |||||||||||| |||||||||| ||||||  ||||||| ||||||||||||||||||| |  ||| |||    
T  6954684 caacaactgtgtatatgtctctgtcctcatatcaagtgagatgatcacaaatttttcaactgtaagattcttcaaatgacaataatatcggtgacggaca 6954783  T
Q  311 caccaactaacactacttttcaaataaacgccatttcgcacatacttaccaaaaggatgacgcaccaataccacaggcaaacaatcaatgtctctccaat 410  Q
      |||| ||| |||| | |||||||||||   || || | || || |   | || |||||  ||||||| |||| || ||||||||||| |||||||||     
T  6954784 acccaattaatactattattcaaataaactttatctctcgcaaacattaaagaacgatgatacaccaattccaccgggaaacaatcaatatctctccaaa 6954883  T
Q  411 cattatcacccaaagtaaaaact 433  Q
    |||||||||||||||||||||||    
T  6954884 cattatcacccaaagtaaaaact 6954906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 46 - 264
Target Start/End: Complemental strand, 20770720 - 20770502
Alignment:
Q  46 ataactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaatgggttttcttagaatcataagaaaaatag 145  Q
    |||||||||||||||||||||| |||| || ||||||| ||||||||||||||||||||| ||||||||||  ||||| |||  ||||| ||||||| |     
T  20770720 ataactaattttaaggaattgaatccatgactcttcaattccaaattccttcatttgccatataacaaaataagtttttttaacatcatgagaaaaacaa 20770621  T
Q  146 aggcaatccatcaatacagaaagagttggaacattatgtagctcttcatcacaacatcgagggagcaacaattgtgtatatgtctctgtccccaaatcaa 245  Q
    |  ||||||||||| ||| |||||||| ||  || | || |   ||||||||||||| ||||||| ||||| ||| | ||||||||| || |||||||||    
T  20770620 atacaatccatcaacacacaaagagtttgattatcaagtggaaattcatcacaacattgagggagtaacaactgtttgtatgtctctttcgccaaatcaa 20770521  T
Q  246 gtgagatcatcacaaattg 264  Q
    | ||||| |||||||||||    
T  20770520 gggagatgatcacaaattg 20770502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 36 - 105
Target Start/End: Complemental strand, 17369744 - 17369675
Alignment:
Q  36 gaagattcgtataactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgcca 105  Q
    ||||||||  ||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||    
T  17369744 gaagattctgataactaattttaagaaattgagtccaagagtcttcaactccaaattccttcatttgcca 17369675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 50 - 120
Target Start/End: Complemental strand, 14749463 - 14749393
Alignment:
Q  50 ctaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaatgggt 120  Q
    |||||||| ||||||||||||||||| |||| ||||||||||||| ||||   ||| | ||||||||||||    
T  14749463 ctaattttgaggaattgagtccaagactcttgaactccaaattccatcatcctccataaaacaaaatgggt 14749393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 48 - 126
Target Start/End: Original strand, 24254428 - 24254506
Alignment:
Q  48 aactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaatgggttttctt 126  Q
    |||| ||||| | ||||||||||||||||| ||| ||||||||||||  ||| ||||| ||||||||||| ||| ||||    
T  24254428 aactgattttgatgaattgagtccaagattgttcgactccaaattccgacatctgccatataacaaaatgagttctctt 24254506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 189 - 261
Target Start/End: Original strand, 24950272 - 24950344
Alignment:
Q  189 cttcatcacaacatcgagggagcaacaattgtgtatatgtctctgtccccaaatcaagtgagatcatcacaaa 261  Q
    |||||| | ||| ||||||| ||||||||||| | ||||||||||||| | ||||||||||||| ||| ||||    
T  24950272 cttcattagaacctcgagggggcaacaattgtctgtatgtctctgtcctcgaatcaagtgagatgatcgcaaa 24950344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 52 - 116
Target Start/End: Original strand, 24950150 - 24950214
Alignment:
Q  52 aattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaat 116  Q
    |||||||||||||||| ||||||| || ||||||||||| | | |||| | ||| ||||||||||    
T  24950150 aattttaaggaattgactccaagactcctcaactccaaacttcatcatcttccatataacaaaat 24950214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 263; Significance: 1e-146; HSPs: 59)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 21 - 438
Target Start/End: Original strand, 1985930 - 1986350
Alignment:
Q  21 ttttaaaatcgtttagaagattcgtataactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaatgggt 120  Q
    |||||| ||| | |||||||||| |||||||||||||||  ||||||||||||||||||||||| |||||||||||||||||||| | ||||||||||||    
T  1985930 ttttaatatcttctagaagattcatataactaattttaaacaattgagtccaagattcttcaacgccaaattccttcatttgccaaagaacaaaatgggt 1986029  T
Q  121 tttcttagaatcataagaaaaatagaggcaatccatcaatacagaaagagttggaacattatgtagctcttcatcacaacatcgagggagcaacaattgt 220  Q
    ||||||  ||||||||||||||||||||||||||||||| ||||||||||||||||||  |||||| |||||||||||| |||||||||||||||| |||    
T  1986030 tttcttgaaatcataagaaaaatagaggcaatccatcaacacagaaagagttggaacaccatgtagatcttcatcacaatatcgagggagcaacaactgt 1986129  T
Q  221 gtatatgtctctgtccccaaatcaagtgagatcatcacaaattgttcaacaataagatttttcaaatgacaataatatctgcaacgaacacaccaactaa 320  Q
    |||||| ||||||||||||||||||||||||| || |||| |||||||||  ||||||| ||||||||||||| ||||| |  |||||||||||||||||    
T  1986130 gtatatctctctgtccccaaatcaagtgagataattacaagttgttcaactgtaagattcttcaaatgacaattatatcggtgacgaacacaccaactaa 1986229  T
Q  321 cactacttttcaaataaacgccatttcgcacatactt---accaaaaggatgacgcaccaataccacaggcaaacaatcaatgtctctccaatcattatc 417  Q
     |||||| ||||||||||| ||||||| |||||||||   |||||||||||||| ||||| ||||||||||||||||||||| ||||||||||||||||     
T  1986230 tactactattcaaataaacaccatttctcacatacttaccaccaaaaggatgacacaccactaccacaggcaaacaatcaatttctctccaatcattata 1986329  T
Q  418 acccaaagtaaaaactcttac 438  Q
    |||||||||||||||||||||    
T  1986330 acccaaagtaaaaactcttac 1986350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 46 - 269
Target Start/End: Original strand, 13416911 - 13417146
Alignment:
Q  46 ataactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaatgggttttcttagaatcataagaaaaatag 145  Q
    |||||||||||||| ||||| |  |||||| ||||||||||||||||||||||||||||| || | ||||| |||||||||| |||||||||||||| |     
T  13416911 ataactaattttaacgaattcaacccaagactcttcaactccaaattccttcatttgccatatgataaaataggttttcttaaaatcataagaaaaacaa 13417010  T
Q  146 aggcaatccatcaatacagaaagag------------ttggaacattatgtagctcttcatcacaacatcgagggagcaacaattgtgtatatgtctctg 233  Q
    || |||||  |||| | ||||||||            |||||  ||   |||||||||| |||||||||||||| |||||||| |||||||||||||| |    
T  13417011 agacaatcattcaacatagaaagagtaggaggaagtattggaggatcgcgtagctcttcctcacaacatcgaggtagcaacaactgtgtatatgtctcag 13417110  T
Q  234 tccccaaatcaagtgagatcatcacaaattgttcaa 269  Q
    ||||||| ||||  ||||| ||||||||||||||||    
T  13417111 tccccaactcaaccgagataatcacaaattgttcaa 13417146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 36 - 299
Target Start/End: Original strand, 15571885 - 15572163
Alignment:
Q  36 gaagattcgtataactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaatgggttttcttagaatcata 135  Q
    ||||||| | ||||||||||||| ||||||||  |||||| |||||||||||||| ||| |||||||||| || ||||||||||||  |||  |||||||    
T  15571885 gaagatttgaataactaattttatggaattgaacccaagactcttcaactccaaactccctcatttgccacatgacaaaatgggttcccttgaaatcata 15571984  T
Q  136 agaaaaatagaggcaatccatcaatacagaaag------agttgga----acatt-----atgtagctcttcatcacaacatcgagggagcaacaattgt 220  Q
    ||||||| | || |||||||| || ||||||||      |||| |     | |||     || ||  |||||||||||||||||||| |||| | |||||    
T  15571985 agaaaaacaaagacaatccataaacacagaaagataaagagtttgccaagaaatttgagaatataagtcttcatcacaacatcgaggtagcatcgattgt 15572084  T
Q  221 gtatatgtctctgtccccaaatcaagtgagatcatcacaaattgttcaacaataagatttttcaaatgacaataatatc 299  Q
     ||||||| ||||||||||||||||| ||||| ||||||||||||||||   ||||||| |||||||||||||||||||    
T  15572085 ctatatgtttctgtccccaaatcaagcgagattatcacaaattgttcaatcgtaagattcttcaaatgacaataatatc 15572163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 36 - 169
Target Start/End: Original strand, 18514777 - 18514910
Alignment:
Q  36 gaagattcgtataactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaatgggttttcttagaatcata 135  Q
    |||||||| ||||||||||||||||||||||||||||||| | ||||||||||||||| | ||||| ||| ||||  |||||| |||||||  |||||||    
T  18514777 gaagattcatataactaattttaaggaattgagtccaagagttttcaactccaaattcgtccattttccatataatgaaatggcttttcttgaaatcata 18514876  T
Q  136 agaaaaatagaggcaatccatcaatacagaaaga 169  Q
    ||||||| | | ||||||||| || |||||||||    
T  18514877 agaaaaacacatgcaatccattaaaacagaaaga 18514910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 36 - 117
Target Start/End: Complemental strand, 14076758 - 14076677
Alignment:
Q  36 gaagattcgtataactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaatg 117  Q
    ||||||||  ||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||| ||||| |||||    
T  14076758 gaagattctgataactaattttaagaaattgagtccaagagtcttcaactccaaattccttcatttgccatataacgaaatg 14076677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 36 - 117
Target Start/End: Complemental strand, 14386786 - 14386705
Alignment:
Q  36 gaagattcgtataactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaatg 117  Q
    ||||||||  ||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||| ||||| |||||    
T  14386786 gaagattctgataactaattttaagaaattgagtccaagagtcttcaactccaaattccttcatttgccatataacgaaatg 14386705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 193 - 269
Target Start/End: Complemental strand, 14076618 - 14076542
Alignment:
Q  193 atcacaacatcgagggagcaacaattgtgtatatgtctctgtccccaaatcaagtgagatcatcacaaattgttcaa 269  Q
    |||||||||| ||||||| |||||||||||||||||||| |||||||||||||||||||| ||||||||||| ||||    
T  14076618 atcacaacatggagggagtaacaattgtgtatatgtctcagtccccaaatcaagtgagataatcacaaattgctcaa 14076542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 193 - 269
Target Start/End: Complemental strand, 14386646 - 14386570
Alignment:
Q  193 atcacaacatcgagggagcaacaattgtgtatatgtctctgtccccaaatcaagtgagatcatcacaaattgttcaa 269  Q
    |||||||||| ||||||| |||||||||||||||||||| |||||||||||||||||||| ||||||||||| ||||    
T  14386646 atcacaacatggagggagtaacaattgtgtatatgtctcagtccccaaatcaagtgagataatcacaaattgctcaa 14386570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 34 - 164
Target Start/End: Original strand, 19344563 - 19344693
Alignment:
Q  34 tagaagattcgtataactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaatgggttttcttagaatca 133  Q
    ||||||||||  | ||||||||||||| |||||||||||||||| |||||||||||||||| |||| ||||| ||||||||||| || |||||   ||      
T  19344563 tagaagattctgaaaactaattttaagaaattgagtccaagattgttcaactccaaattccatcatctgccatataacaaaatgagtgttcttgagattg 19344662  T
Q  134 taagaaaaatagaggcaatccatcaatacag 164  Q
    | ||||||| | ||||| |||||||||||||    
T  19344663 tgagaaaaacaaaggcagtccatcaatacag 19344693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 46 - 115
Target Start/End: Original strand, 660847 - 660916
Alignment:
Q  46 ataactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaa 115  Q
    |||||||||||||||||||||||||||||| |||||||||| |||||||||||| ||||| |||||||||    
T  660847 ataactaattttaaggaattgagtccaagactcttcaactcgaaattccttcatctgccatataacaaaa 660916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 47 - 142
Target Start/End: Original strand, 19604464 - 19604559
Alignment:
Q  47 taactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaatgggttttcttagaatcataagaaaaa 142  Q
    |||||||||||||||||||||||||| || ||||||||||||||||||||||| ||||| |||| ||| || ||||| | | |||||| |||||||    
T  19604464 taactaattttaaggaattgagtccaggagtcttcaactccaaattccttcatctgccatataataaagtgagttttatgaaaatcatgagaaaaa 19604559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 53 - 126
Target Start/End: Complemental strand, 22021455 - 22021382
Alignment:
Q  53 attttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaatgggttttctt 126  Q
    |||||||| ||||||||||||||||||||||||||| | ||| |||| ||||| ||||| ||||||||||||||    
T  22021455 attttaagtaattgagtccaagattcttcaactccataatccatcatctgccatataaccaaatgggttttctt 22021382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 46 - 154
Target Start/End: Original strand, 6864807 - 6864914
Alignment:
Q  46 ataactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaatgggttttcttagaatcataagaaaaatag 145  Q
    ||||||| |||||||||| ||||||||||| ||||||||||||||||||||||||  ||| || || ||||| ||||  ||  |||||| ||||||||||    
T  6864807 ataactagttttaaggaactgagtccaagactcttcaactccaaattccttcattaaccatattac-aaatgagtttgtttgaaatcatgagaaaaatag 6864905  T
Q  146 aggcaatcc 154  Q
    || ||||||    
T  6864906 agacaatcc 6864914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 47 - 131
Target Start/End: Complemental strand, 29867305 - 29867221
Alignment:
Q  47 taactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaatgggttttcttagaat 131  Q
    ||||||||| ||||||||||||||||||| |||||||| || |||| |||||||||||| |||| |||||  |||| ||||||||    
T  29867305 taactaattctaaggaattgagtccaagaatcttcaaccccgaatttcttcatttgccatataataaaatcagtttccttagaat 29867221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 48 - 122
Target Start/End: Complemental strand, 22028696 - 22028622
Alignment:
Q  48 aactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaatgggttt 122  Q
    ||||||| ||||| |||||||||||||| |||||||||||| | ||| |||||| ||| ||||||||||||||||    
T  22028696 aactaatcttaagtaattgagtccaagactcttcaactccataatccgtcattttccatataacaaaatgggttt 22028622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 46 - 116
Target Start/End: Original strand, 29454103 - 29454173
Alignment:
Q  46 ataactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaat 116  Q
    |||||||||||||| ||||||||||||||| |||||||||||||||| | ||||  |||| ||||||||||    
T  29454103 ataactaattttaaagaattgagtccaagaatcttcaactccaaatttcatcatccgccatataacaaaat 29454173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 47 - 105
Target Start/End: Complemental strand, 29881325 - 29881267
Alignment:
Q  47 taactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgcca 105  Q
    ||||||||| ||||||||||||||||||| |||||||| ||||||| ||||||||||||    
T  29881325 taactaattctaaggaattgagtccaagaatcttcaaccccaaatttcttcatttgcca 29881267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 48 - 116
Target Start/End: Original strand, 12819918 - 12819986
Alignment:
Q  48 aactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaat 116  Q
    |||| |||||||||||||||||||| |||| |||||||||||||||| |||| ||||| | ||||||||    
T  12819918 aactgattttaaggaattgagtccaggattgttcaactccaaattccgtcatctgccatacaacaaaat 12819986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 48 - 120
Target Start/End: Original strand, 19351071 - 19351143
Alignment:
Q  48 aactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaatgggt 120  Q
    |||||||||| |||||| |||||||||| || ||||||||||||||| |||| ||||| | ||||||||||||    
T  19351071 aactaattttgaggaatggagtccaagactcctcaactccaaattccatcatctgccataaaacaaaatgggt 19351143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 46 - 142
Target Start/End: Original strand, 20058057 - 20058153
Alignment:
Q  46 ataactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaatgggttttcttagaatcataagaaaaa 142  Q
    ||||||||||||||| ||||||  |||||| ||||||||||  ||||||| ||||| ||| |||||||||||  ||| |||| ||||||| ||||||    
T  20058057 ataactaattttaagaaattgacaccaagactcttcaactctgaattcctccattttccatataacaaaatgactttgcttaaaatcatacgaaaaa 20058153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 46 - 122
Target Start/End: Complemental strand, 20352165 - 20352089
Alignment:
Q  46 ataactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaatgggttt 122  Q
    ||||||||||||||  | ||||||||| || ||||||||||||||||||||||||| ||| || |||||||| ||||    
T  20352165 ataactaattttaaaaagttgagtccatgaatcttcaactccaaattccttcatttcccatattacaaaatgagttt 20352089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 46 - 122
Target Start/End: Complemental strand, 22063712 - 22063636
Alignment:
Q  46 ataactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaatgggttt 122  Q
    |||||||||||| |  || ||||||||||| |||| || ||||||||||||||||||||| ||||||||||| ||||    
T  22063712 ataactaattttgaataactgagtccaagactcttgaaatccaaattccttcatttgccatataacaaaatgagttt 22063636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 46 - 142
Target Start/End: Complemental strand, 22100563 - 22100467
Alignment:
Q  46 ataactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaatgggttttcttagaatcataagaaaaa 142  Q
    |||||||||||| |  || ||||||||||| |||| ||||||||||| |||||||||||| |||| |||||| ||||| ||  |||||| |||||||    
T  22100563 ataactaattttgaataactgagtccaagactcttgaactccaaatttcttcatttgccatataataaaatgagtttttttgaaatcatgagaaaaa 22100467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 46 - 110
Target Start/End: Complemental strand, 29874581 - 29874517
Alignment:
Q  46 ataactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataa 110  Q
    ||||||||||||||| ||| |||||||||| |||||||| ||||||| |||||||||||| ||||    
T  29874581 ataactaattttaagtaatggagtccaagaatcttcaaccccaaatttcttcatttgccatataa 29874517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 33 - 116
Target Start/End: Original strand, 29921980 - 29922063
Alignment:
Q  33 ttagaagattcgtataactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaat 116  Q
    ||||||||||   |||||||||| |||||||||||| |||||| |||||| | ||||||| |||||| ||||| ||||||||||    
T  29921980 ttagaagattttgataactaattctaaggaattgagaccaagaatcttcatccccaaatttcttcatctgccatataacaaaat 29922063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 183 - 269
Target Start/End: Original strand, 18514945 - 18515031
Alignment:
Q  183 gtagctcttcatcacaacatcgagggagcaacaattgtgtatatgtctctgtccccaaatcaagtgagatcatcacaaattgttcaa 269  Q
    ||||||||| || |||| ||||||||||||| || ||||||||||||||||||  ||||||||| ||||  || ||| |||||||||    
T  18514945 gtagctctttattacaagatcgagggagcaagaactgtgtatatgtctctgtcttcaaatcaagcgagacaataacatattgttcaa 18515031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 69 - 126
Target Start/End: Complemental strand, 9807871 - 9807814
Alignment:
Q  69 tccaagattcttcaactccaaattccttcatttgccagataacaaaatgggttttctt 126  Q
    ||||||| ||||||||||||||||||||||| ||||| ||||| |||| |||||||||    
T  9807871 tccaagactcttcaactccaaattccttcatctgccatataacgaaatcggttttctt 9807814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 47 - 120
Target Start/End: Original strand, 18952906 - 18952979
Alignment:
Q  47 taactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaatgggt 120  Q
    ||||||||||||||||| |||||||| || |  |||||||||||||||||||| ||||| || | |||||||||    
T  18952906 taactaattttaaggaactgagtccatgacttgtcaactccaaattccttcatctgccatatgataaaatgggt 18952979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 47 - 120
Target Start/End: Original strand, 18982953 - 18983026
Alignment:
Q  47 taactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaatgggt 120  Q
    ||||||||||||||||| |||||||| || |  |||||||||||||||||||| ||||| || | |||||||||    
T  18982953 taactaattttaaggaactgagtccaggacttgtcaactccaaattccttcatctgccatatgataaaatgggt 18983026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 47 - 120
Target Start/End: Original strand, 18997599 - 18997672
Alignment:
Q  47 taactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaatgggt 120  Q
    ||||||||||||||||| |||||||| || |  |||||||||||||||||||| ||||| || | |||||||||    
T  18997599 taactaattttaaggaactgagtccaggacttgtcaactccaaattccttcatctgccatatgataaaatgggt 18997672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 378 - 438
Target Start/End: Original strand, 15572242 - 15572302
Alignment:
Q  378 ataccacaggcaaacaatcaatgtctctccaatcattatcacccaaagtaaaaactcttac 438  Q
    ||||| |||| ||||||||||| ||||||||| | ||||||||||||||||| ||||||||    
T  15572242 ataccccaggaaaacaatcaatatctctccaaacgttatcacccaaagtaaatactcttac 15572302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 47 - 123
Target Start/End: Complemental strand, 20338993 - 20338917
Alignment:
Q  47 taactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaatgggtttt 123  Q
    ||||| |||| || || |||||||||||| ||||||||||| ||||||||||||| ||| || |||||||| |||||    
T  20338993 taactgatttgaaagagttgagtccaagaatcttcaactcctaattccttcattttccatattacaaaatgagtttt 20338917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 189 - 257
Target Start/End: Complemental strand, 24385119 - 24385051
Alignment:
Q  189 cttcatcacaacatcgagggagcaacaattgtgtatatgtctctgtccccaaatcaagtgagatcatca 257  Q
    |||||||| ||| | ||||| ||||||||||||| ||| ||||||||||||||| ||||||||| ||||    
T  24385119 cttcatcagaaccttgagggggcaacaattgtgtgtatttctctgtccccaaattaagtgagatgatca 24385051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 38 - 117
Target Start/End: Complemental strand, 22070189 - 22070110
Alignment:
Q  38 agattcgtataactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaatg 117  Q
    |||||| ||||||||||||| |  ||  |||||||||| |||| ||||||||||| |||||||||||| |||| ||||||    
T  22070189 agattcttataactaattttgaataaccgagtccaagactcttgaactccaaattgcttcatttgccatataataaaatg 22070110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 205 - 252
Target Start/End: Complemental strand, 24391316 - 24391269
Alignment:
Q  205 agggagcaacaattgtgtatatgtctctgtccccaaatcaagtgagat 252  Q
    |||| ||||||||||||| ||||||||| |||||||||||||||||||    
T  24391316 agggggcaacaattgtgtgtatgtctctatccccaaatcaagtgagat 24391269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 50 - 141
Target Start/End: Complemental strand, 36263119 - 36263028
Alignment:
Q  50 ctaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaatgggttttcttagaatcataagaaaa 141  Q
    |||| ||||| || |||||||||||| ||||||||||||||||| | ||| | ||| ||||||||||  ||||||||| | |||| ||||||    
T  36263119 ctaactttaatgagttgagtccaagactcttcaactccaaattcttccatcttccatataacaaaatcagttttcttatagtcattagaaaa 36263028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 48 - 126
Target Start/End: Original strand, 19325987 - 19326065
Alignment:
Q  48 aactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaatgggttttctt 126  Q
    |||| ||||| | ||||||||||||||||| ||| ||||||||||||  ||| ||||| ||||||||||| ||| ||||    
T  19325987 aactgattttgatgaattgagtccaagattgttctactccaaattccgacatatgccatataacaaaatgagttctctt 19326065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #38
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 46 - 116
Target Start/End: Original strand, 19637217 - 19637287
Alignment:
Q  46 ataactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaat 116  Q
    |||||||||||||||||   || |||| || |||| |||||||||||||||||||||||| |||| |||||    
T  19637217 ataactaattttaaggagccgaatccacgactcttgaactccaaattccttcatttgccatataataaaat 19637287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #39
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 36 - 122
Target Start/End: Original strand, 20374493 - 20374579
Alignment:
Q  36 gaagattcgtataactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaatgggttt 122  Q
    |||||||  |||||||||||||||  | |||| |||| || ||| ||||||||||||||||||||| ||| || |||||||| ||||    
T  20374493 gaagattattataactaattttaaaaagttgaatccatgaatctccaactccaaattccttcatttcccatattacaaaatgagttt 20374579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #40
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 46 - 116
Target Start/End: Complemental strand, 29859524 - 29859454
Alignment:
Q  46 ataactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaat 116  Q
    ||||||||||||||| ||| | |||||||| |||||||||||||||| |||||| | ||| ||||| ||||    
T  29859524 ataactaattttaagaaatggggtccaagaatcttcaactccaaatttcttcatctcccatataacgaaat 29859454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #41
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 47 - 116
Target Start/End: Complemental strand, 29106883 - 29106814
Alignment:
Q  47 taactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaat 116  Q
    |||||||||||||  | |||||||||||| |||||||| ||||||| |||||| ||||| | ||||||||    
T  29106883 taactaattttaaaaagttgagtccaagactcttcaaccccaaatttcttcatctgccatacaacaaaat 29106814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #42
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 46 - 131
Target Start/End: Original strand, 29431001 - 29431086
Alignment:
Q  46 ataactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaatgggttttcttagaat 131  Q
    ||||||||||||||||||||| |||||||| |||| | | ||||||| | ||||  |||| |||||||||| ||| | ||||||||    
T  29431001 ataactaattttaaggaattgggtccaagaatctttagccccaaatttcatcatccgccatataacaaaataggtgtccttagaat 29431086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #43
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 53 - 122
Target Start/End: Original strand, 29445663 - 29445732
Alignment:
Q  53 attttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaatgggttt 122  Q
    ||||| || |||||||||||||| |||||||| || ||||||||||| ||||| |||| ||||| |||||    
T  29445663 atttttagaaattgagtccaagagtcttcaacccctaattccttcatctgccatataagaaaatcggttt 29445732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #44
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 62 - 158
Target Start/End: Complemental strand, 15444018 - 15443922
Alignment:
Q  62 aattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaatgggttttcttagaatcataagaaaaatagaggcaatccatca 158  Q
    |||||||||||||| |||||||||||| | |||||||| ||||| | ||||||    ||| | || ||||||||||||||| | || ||||||||||    
T  15444018 aattgagtccaagactcttcaactccatactccttcatatgccataaaacaaatccagttgtattggaatcataagaaaaacaaagacaatccatca 15443922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #45
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 48 - 120
Target Start/End: Complemental strand, 19357978 - 19357906
Alignment:
Q  48 aactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaatgggt 120  Q
    |||||||||| | ||||||||||||||| |||| ||||||||||||| |||| | ||| | ||| ||||||||    
T  19357978 aactaatttttaagaattgagtccaagactcttgaactccaaattccatcatcttccataaaacgaaatgggt 19357906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #46
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 48 - 116
Target Start/End: Complemental strand, 19722086 - 19722018
Alignment:
Q  48 aactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaat 116  Q
    |||| ||||| ||||||||||||||||| |||| ||||||||||||| |||| | ||| | ||||||||    
T  19722086 aactgattttgaggaattgagtccaagaatcttgaactccaaattccatcatcttccataaaacaaaat 19722018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #47
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 66 - 122
Target Start/End: Complemental strand, 22080918 - 22080862
Alignment:
Q  66 gagtccaagattcttcaactccaaattccttcatttgccagataacaaaatgggttt 122  Q
    |||||||||| |||| ||||||||||| |||||||||||| |||| |||||| ||||    
T  22080918 gagtccaagactcttgaactccaaattgcttcatttgccatataataaaatgagttt 22080862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #48
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 48 - 116
Target Start/End: Complemental strand, 29899442 - 29899374
Alignment:
Q  48 aactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaat 116  Q
    |||||||||| |  ||||||||||| || |||||||| ||||||| |||||| ||||| ||||||||||    
T  29899442 aactaatttttaaaaattgagtccaggactcttcaaccccaaatttcttcatctgccatataacaaaat 29899374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #49
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 46 - 105
Target Start/End: Original strand, 19645630 - 19645689
Alignment:
Q  46 ataactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgcca 105  Q
    ||||||||||||||| ||  ||||||| || ||||||| ||||||||||||||| |||||    
T  19645630 ataactaattttaagtaacagagtccatgactcttcaattccaaattccttcatctgcca 19645689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #50
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 50 - 141
Target Start/End: Complemental strand, 36260319 - 36260228
Alignment:
Q  50 ctaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaatgggttttcttagaatcataagaaaa 141  Q
    ||||||||||  | |||| ||||||| ||||||||||||||||| | ||| | ||| ||||||||||  ||||||||  |||||| ||||||    
T  36260319 ctaattttaataagttgaatccaagactcttcaactccaaattcttccatcttccatataacaaaatcagttttcttgtaatcattagaaaa 36260228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #51
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 50 - 124
Target Start/End: Original strand, 13888098 - 13888172
Alignment:
Q  50 ctaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaatgggttttc 124  Q
    |||| ||||||||||||||||||||| | |||  |||||||||   |||||| ||| |||||||||| |||||||    
T  13888098 ctaaatttaaggaattgagtccaagacttttcgtctccaaattttgtcattttccatataacaaaattggttttc 13888172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #52
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 224 - 278
Target Start/End: Original strand, 16839559 - 16839613
Alignment:
Q  224 tatgtctctgtccccaaatcaagtgagatcatcacaaattgttcaacaataagat 278  Q
    |||||||| || |||||||||||||| || ||||||||||| |||||| ||||||    
T  16839559 tatgtctccgtgcccaaatcaagtgaaataatcacaaattgctcaacagtaagat 16839613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #53
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 48 - 94
Target Start/End: Complemental strand, 19374824 - 19374778
Alignment:
Q  48 aactaattttaaggaattgagtccaagattcttcaactccaaattcc 94  Q
    ||||||||||||| ||||||||||||||   ||||||||||||||||    
T  19374824 aactaattttaagaaattgagtccaagaccgttcaactccaaattcc 19374778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #54
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 50 - 116
Target Start/End: Original strand, 21218712 - 21218778
Alignment:
Q  50 ctaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaat 116  Q
    |||| ||| ||||||||||||||||| |  ||| ||||||||||| |||||||||| ||||| ||||    
T  21218712 ctaaatttgaggaattgagtccaagacttatcatctccaaattccgtcatttgccatataaccaaat 21218778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #55
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 36 - 114
Target Start/End: Complemental strand, 24002279 - 24002201
Alignment:
Q  36 gaagattcgtataactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaa 114  Q
    ||||||||  ||||||||| ||||| |||||||||||||| |||| ||||||  | |||||||| ||||| | ||||||    
T  24002279 gaagattctgataactaatcttaagtaattgagtccaagactcttgaactccgtactccttcatatgccataaaacaaa 24002201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #56
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 62 - 159
Target Start/End: Complemental strand, 26256829 - 26256732
Alignment:
Q  62 aattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaatgggttttcttagaatcataagaaaaatagaggcaatccatcaa 159  Q
    |||||||||||||| |||| ||||||| | |||||||| ||||| | ||||||||   ||| ||| | ||||| ||||||| | ||||| ||||||||    
T  26256829 aattgagtccaagactcttgaactccatactccttcatctgccataaaacaaaatcattttccttggtatcatgagaaaaacaaaggcattccatcaa 26256732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #57
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 62 - 158
Target Start/End: Complemental strand, 15508800 - 15508704
Alignment:
Q  62 aattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaatgggttttcttagaatcataagaaaaatagaggcaatccatca 158  Q
    |||||||||| ||| | |||||||||| | |||||||| ||||| | ||||||    ||||| || ||||||||||||||| | || ||||||||||    
T  15508800 aattgagtcctagactattcaactccatactccttcatatgccaaaaaacaaatccagttttattggaatcataagaaaaacaaagacaatccatca 15508704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #58
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 69 - 105
Target Start/End: Original strand, 20133340 - 20133376
Alignment:
Q  69 tccaagattcttcaactccaaattccttcatttgcca 105  Q
    ||||||| ||||||||||||||||| |||||||||||    
T  20133340 tccaagaatcttcaactccaaattctttcatttgcca 20133376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #59
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 69 - 105
Target Start/End: Original strand, 20140841 - 20140877
Alignment:
Q  69 tccaagattcttcaactccaaattccttcatttgcca 105  Q
    ||||||| | |||||||||||||||||||||||||||    
T  20140841 tccaagaattttcaactccaaattccttcatttgcca 20140877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 75; Significance: 2e-34; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 37 - 159
Target Start/End: Complemental strand, 53774919 - 53774797
Alignment:
Q  37 aagattcgtataactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaatgggttttcttagaatcataa 136  Q
    |||||||  |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| ||||  ||| ||||||||    
T  53774919 aagattctgataactaattttaaggaattgagtccaagactcttcaactccaaattccttcatttgccatataacaaaatgagtttctttaaaatcataa 53774820  T
Q  137 gaaaaatagaggcaatccatcaa 159  Q
    |||||| | |  |||||||||||    
T  53774819 gaaaaacaaatacaatccatcaa 53774797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 46 - 159
Target Start/End: Complemental strand, 3565814 - 3565701
Alignment:
Q  46 ataactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaatgggttttcttagaatcataagaaaaatag 145  Q
    ||||||||||||||| |||||||||||||| |||||||| |||||||||||||| ||||| |||| ||||| |||||||||| ||  |||||||||| |     
T  3565814 ataactaattttaagaaattgagtccaagactcttcaaccccaaattccttcatctgccatataataaaatcggttttcttataacaataagaaaaacaa 3565715  T
Q  146 aggcaatccatcaa 159  Q
    ||||| ||| ||||    
T  3565714 aggcagtccctcaa 3565701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 46 - 122
Target Start/End: Original strand, 11970982 - 11971058
Alignment:
Q  46 ataactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaatgggttt 122  Q
    |||||||||| |||| |||||||||||||| ||||| ||||||||||||||||||||||| ||||||||||| ||||    
T  11970982 ataactaattctaagaaattgagtccaagactcttccactccaaattccttcatttgccatataacaaaatgagttt 11971058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 46 - 122
Target Start/End: Complemental strand, 3557796 - 3557720
Alignment:
Q  46 ataactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaatgggttt 122  Q
    ||||||||||||||| |||||||||||||| |||||||| |||||||||||||| ||||| |||| ||||| |||||    
T  3557796 ataactaattttaagaaattgagtccaagactcttcaaccccaaattccttcatatgccatataataaaatcggttt 3557720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 46 - 122
Target Start/End: Original strand, 11981683 - 11981759
Alignment:
Q  46 ataactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaatgggttt 122  Q
    ||||||||||||||| ||| ||||||| || ||||| ||||||||||||||||||||||| ||||||||||| ||||    
T  11981683 ataactaattttaagaaatcgagtccaggactcttccactccaaattccttcatttgccatataacaaaatgagttt 11981759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 46 - 154
Target Start/End: Original strand, 3560958 - 3561066
Alignment:
Q  46 ataactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaatgggttttcttagaatcataagaaaaatag 145  Q
    ||||||||||||||| |||||||||||||| |||||||| |||||||  ||||| ||||| |||| ||||| ||||| |||  ||  |||||||||| |     
T  3560958 ataactaattttaagaaattgagtccaagactcttcaaccccaaattttttcatctgccaaataataaaatcggtttccttgtaagaataagaaaaacaa 3561057  T
Q  146 aggcaatcc 154  Q
    |||||||||    
T  3561058 aggcaatcc 3561066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 46 - 159
Target Start/End: Original strand, 8443454 - 8443567
Alignment:
Q  46 ataactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaatgggttttcttagaatcataagaaaaatag 145  Q
    ||||||||||||||  |||||| ||||||| || | ||||||||| |||||||| ||||| |||||| |||| ||| ||||  |||||||||||||| |     
T  8443454 ataactaattttaaataattgaatccaagactcgtgaactccaaaatccttcatctgccaaataacataatgagttctcttgaaatcataagaaaaacaa 8443553  T
Q  146 aggcaatccatcaa 159  Q
    || || ||||||||    
T  8443554 agacagtccatcaa 8443567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 50 - 123
Target Start/End: Complemental strand, 837842 - 837769
Alignment:
Q  50 ctaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaatgggtttt 123  Q
    ||||||||||  |||||| ||||||| |||| ||| ||||| | |||||||||||| |||||||||||||||||    
T  837842 ctaattttaaataattgaatccaagactcttgaacaccaaaattcttcatttgccatataacaaaatgggtttt 837769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 51 - 117
Target Start/End: Complemental strand, 35767083 - 35767017
Alignment:
Q  51 taattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaatg 117  Q
    |||||||||||| |||| ||||||| ||||||||||||||||| | ||| | ||| |||||||||||    
T  35767083 taattttaaggagttgaatccaagactcttcaactccaaattcttccatcttccatataacaaaatg 35767017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 45 - 122
Target Start/End: Complemental strand, 6372516 - 6372439
Alignment:
Q  45 tataactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaatgggttt 122  Q
    ||||||||||||||   |||||| || |||| |||| ||||||| | |||||||||||||| |||| |||||||||||    
T  6372516 tataactaattttatataattgaatctaagactcttgaactccagaatccttcatttgccatataataaaatgggttt 6372439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 47 - 116
Target Start/End: Original strand, 53430100 - 53430169
Alignment:
Q  47 taactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaat 116  Q
    ||||||||||||||||||||||||||||| |||||  | ||| ||| |||||| ||||| || |||||||    
T  53430100 taactaattttaaggaattgagtccaagaatcttcggccccatatttcttcatctgccatatgacaaaat 53430169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 218 - 267
Target Start/End: Complemental strand, 53774750 - 53774701
Alignment:
Q  218 tgtgtatatgtctctgtccccaaatcaagtgagatcatcacaaattgttc 267  Q
    |||||||||||||||||| |||||||||| || || ||||||||||||||    
T  53774750 tgtgtatatgtctctgtctccaaatcaagcgaaataatcacaaattgttc 53774701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 46 - 110
Target Start/End: Original strand, 1686285 - 1686349
Alignment:
Q  46 ataactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataa 110  Q
    |||||||  |||||| |||||||||||||| || ||||| |||||||||||||| ||||| ||||    
T  1686285 ataactatatttaagaaattgagtccaagactcgtcaacgccaaattccttcatctgccatataa 1686349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 47 - 122
Target Start/End: Complemental strand, 6392893 - 6392815
Alignment:
Q  47 taactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgcca---gataacaaaatgggttt 122  Q
    |||||||||||||  |||||| ||||||| || | ||||||||| ||||||||||||||   ||| |||||||||||||    
T  6392893 taactaattttaaataattgaatccaagactcgtgaactccaaaatccttcatttgccatatgatgacaaaatgggttt 6392815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 48 - 92
Target Start/End: Complemental strand, 53790621 - 53790577
Alignment:
Q  48 aactaattttaaggaattgagtccaagattcttcaactccaaatt 92  Q
    ||||||||||||| |||||||||||||||| ||||| ||||||||    
T  53790621 aactaattttaagaaattgagtccaagattgttcaaatccaaatt 53790577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 46 - 105
Target Start/End: Complemental strand, 6113149 - 6113090
Alignment:
Q  46 ataactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgcca 105  Q
    ||||||||||  |||||| ||||||||||| |||| ||||||||||||| ||||| ||||    
T  6113149 ataactaattcgaaggaactgagtccaagactctttaactccaaattccatcattcgcca 6113090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 84 - 159
Target Start/End: Complemental strand, 10475239 - 10475164
Alignment:
Q  84 ctccaaattccttcatttgccagataacaaaatgggttttcttagaatcataagaaaaatagaggcaatccatcaa 159  Q
    ||||||| |||||||||||||| |||||||||||||| || |   |||||||| ||||| | || |||||||||||    
T  10475239 ctccaaaatccttcatttgccatataacaaaatgggtattttggaaatcataacaaaaacaaagacaatccatcaa 10475164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 86 - 159
Target Start/End: Complemental strand, 10464299 - 10464226
Alignment:
Q  86 ccaaattccttcatttgccagataacaaaatgggttttcttagaatcataagaaaaatagaggcaatccatcaa 159  Q
    ||||| |||||||||||||| |||||||||||||| || |   |||||||| ||||| | || |||||||||||    
T  10464299 ccaaaatccttcatttgccatataacaaaatgggtattttggaaatcataacaaaaacaaagacaatccatcaa 10464226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 40 - 116
Target Start/End: Complemental strand, 10468118 - 10468042
Alignment:
Q  40 attcgtataactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaat 116  Q
    |||| ||||| |||||||||  |||||| |||||||    | ||||||||| |||||||||||||| ||||||||||    
T  10468118 attcttataagtaattttaaataattgaatccaagacgactgaactccaaaatccttcatttgccatataacaaaat 10468042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 71; Significance: 5e-32; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 36 - 269
Target Start/End: Original strand, 18964820 - 18965056
Alignment:
Q  36 gaagattcgtataactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaatgggttttcttagaatcata 135  Q
    ||||||||  ||||| ||||||||| |||||||||||||| ||||||||||||||||||||||||||||| ||||  ||||| ||||| | |  |||||     
T  18964820 gaagattctgataacaaattttaagaaattgagtccaagagtcttcaactccaaattccttcatttgccatataatgaaatgagttttttcaagatcatg 18964919  T
Q  136 agaaaaatagaggcaatccatcaatacagaaagagttggaacatta---tgtagctcttcatcacaacatcgagggagcaacaattgtgtatatgtctct 232  Q
    || |||| | ||||||| |||||||||| |||| || |||  || |    || ||   |||||||||||| ||||||| ||||| |||||| |||||||     
T  18964920 agtaaaacaaaggcaattcatcaatacacaaagggtcggagtatcaagcggttgcaactcatcacaacatggagggagtaacaactgtgtaaatgtctcc 18965019  T
Q  233 gtccccaaatcaagtgagatcatcacaaattgttcaa 269  Q
     |||||| |||||||||||| ||||||||||| ||||    
T  18965020 atccccagatcaagtgagataatcacaaattgctcaa 18965056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 48 - 159
Target Start/End: Complemental strand, 29647744 - 29647633
Alignment:
Q  48 aactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaatgggttttcttagaatcataagaaaaatagag 147  Q
    |||||||||||||||||||||||||||||| ||||| |||||||||  |||||||||| ||||||||||| |||||||||  ||  | ||||||| | ||    
T  29647744 aactaattttaaggaattgagtccaagattgttcaaatccaaattctatcatttgccatataacaaaatgagttttcttaagatggtgagaaaaacaaag 29647645  T
Q  148 gcaatccatcaa 159  Q
    ||||||||||||    
T  29647644 gcaatccatcaa 29647633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 48 - 122
Target Start/End: Original strand, 29597554 - 29597628
Alignment:
Q  48 aactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaatgggttt 122  Q
    |||||||||||||||||||||||||||||| |||||||||||||||  |||||||||| ||||||||||| ||||    
T  29597554 aactaattttaaggaattgagtccaagattgttcaactccaaattcaatcatttgccatataacaaaatgagttt 29597628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 48 - 127
Target Start/End: Complemental strand, 29642427 - 29642348
Alignment:
Q  48 aactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaatgggttttctta 127  Q
    |||||||||||||||||||||||||||||| ||||| |||||||||  |||||||||| ||||| ||||| |||||||||    
T  29642427 aactaattttaaggaattgagtccaagattgttcaaatccaaattctatcatttgccatataacgaaatgagttttctta 29642348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 47 - 122
Target Start/End: Original strand, 24330900 - 24330975
Alignment:
Q  47 taactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaatgggttt 122  Q
    ||||||| |||||||| |||||||||||| |||||||| |||||||||||||| | ||| |||||||||| |||||    
T  24330900 taactaactttaaggagttgagtccaagaatcttcaaccccaaattccttcatctcccatataacaaaatcggttt 24330975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 65 - 114
Target Start/End: Complemental strand, 23086833 - 23086784
Alignment:
Q  65 tgagtccaagattcttcaactccaaattccttcatttgccagataacaaa 114  Q
    ||||||||||| |||| ||||||||| |||||||| ||||| ||||||||    
T  23086833 tgagtccaagactcttgaactccaaactccttcatctgccatataacaaa 23086784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 53 - 121
Target Start/End: Original strand, 28763912 - 28763980
Alignment:
Q  53 attttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaatgggtt 121  Q
    ||||| |||||| || ||||||| | |||||||||||||| | |||| | ||| |||||||||||||||    
T  28763912 attttgaggaatcgactccaagacttttcaactccaaattgcgtcatcttccatataacaaaatgggtt 28763980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 71; Significance: 5e-32; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 36 - 142
Target Start/End: Complemental strand, 14514980 - 14514874
Alignment:
Q  36 gaagattcgtataactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaatgggttttcttagaatcata 135  Q
    |||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||| | ||||| ||| ||||||| ||||||||||||  |||||||    
T  14514980 gaagattcatataactaattttaaggaattgagtccaagaatcttcaactccaaattcatccattttccatataacaagatgggttttcttgaaatcata 14514881  T
Q  136 agaaaaa 142  Q
    |||||||    
T  14514880 agaaaaa 14514874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 48 - 122
Target Start/End: Original strand, 18908811 - 18908885
Alignment:
Q  48 aactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaatgggttt 122  Q
    |||||||||| ||||||||||||||||| |||| ||||||||||||| |||| | ||| ||||||||||||||||    
T  18908811 aactaattttgaggaattgagtccaagactcttgaactccaaattccatcatcttccatataacaaaatgggttt 18908885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 48 - 122
Target Start/End: Original strand, 18920767 - 18920841
Alignment:
Q  48 aactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaatgggttt 122  Q
    |||||||||| ||||||||||||||||| |||| ||||||||||||| |||| | ||| ||||||||||||||||    
T  18920767 aactaattttgaggaattgagtccaagactcttgaactccaaattccatcatcttccatataacaaaatgggttt 18920841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 48 - 121
Target Start/End: Original strand, 18913559 - 18913632
Alignment:
Q  48 aactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaatgggtt 121  Q
    |||||||||| ||||||||||||||||| |||| ||||||||||||| |||| | ||| |||||||||||||||    
T  18913559 aactaattttgaggaattgagtccaagactcttgaactccaaattccatcatcttccatataacaaaatgggtt 18913632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 46 - 121
Target Start/End: Complemental strand, 554546 - 554471
Alignment:
Q  46 ataactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaatgggtt 121  Q
    ||||||||||||||| |||||||||||||| |||| ||||||| ||||  |||||||||| |||| || |||||||    
T  554546 ataactaattttaagtaattgagtccaagactctttaactccatattctatcatttgccatataataagatgggtt 554471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 62 - 117
Target Start/End: Complemental strand, 20975612 - 20975557
Alignment:
Q  62 aattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaatg 117  Q
    |||||| ||||||| |||||||||||||||||| |||||||||| |||||||||||    
T  20975612 aattgaatccaagaatcttcaactccaaattccctcatttgccatataacaaaatg 20975557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 204 - 269
Target Start/End: Original strand, 20712691 - 20712756
Alignment:
Q  204 gagggagcaacaattgtgtatatgtctctgtccccaaatcaagtgagatcatcacaaattgttcaa 269  Q
    |||||||||||| |||||| ||||||||  |||||||||| || ||||| ||||||||||||||||    
T  20712691 gagggagcaacatttgtgtgtatgtctccatccccaaatcgagggagatgatcacaaattgttcaa 20712756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 62 - 116
Target Start/End: Complemental strand, 25698561 - 25698507
Alignment:
Q  62 aattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaat 116  Q
    |||| ||||||||| |||||||||||||||||  |||||||||| ||||||||||    
T  25698561 aatttagtccaagagtcttcaactccaaattctctcatttgccatataacaaaat 25698507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 204 - 269
Target Start/End: Complemental strand, 14514795 - 14514730
Alignment:
Q  204 gagggagcaacaattgtgtatatgtctctgtccccaaatcaagtgagatcatcacaaattgttcaa 269  Q
    |||||||||| || ||||||||||||||||||| ||||||||| ||||  |  |||||||||||||    
T  14514795 gagggagcaagaactgtgtatatgtctctgtcctcaaatcaagcgagacaaaaacaaattgttcaa 14514730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 214 - 271
Target Start/End: Complemental strand, 20967602 - 20967545
Alignment:
Q  214 caattgtgtatatgtctctgtccccaaatcaagtgagatcatcacaaattgttcaaca 271  Q
    ||||||||| || |||||||||||||||||||| || || ||||||||||| ||||||    
T  20967602 caattgtgtgtaggtctctgtccccaaatcaagggaaatgatcacaaattgctcaaca 20967545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 46 - 118
Target Start/End: Complemental strand, 25377144 - 25377072
Alignment:
Q  46 ataactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaatgg 118  Q
    ||||||||||||||  |||||| ||||||| |||| ||||||||| ||||||||   ||| ||||||||||||    
T  25377144 ataactaattttaaataattgaatccaagactcttgaactccaaaatccttcatcatccatataacaaaatgg 25377072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 227 - 269
Target Start/End: Original strand, 20699621 - 20699663
Alignment:
Q  227 gtctctgtccccaaatcaagtgagatcatcacaaattgttcaa 269  Q
    |||||||| ||||||||||||||||| ||||||||||| ||||    
T  20699621 gtctctgttcccaaatcaagtgagataatcacaaattgatcaa 20699663  T

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Target: chr1 (Bit Score: 52; Significance: 1e-20; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 45 - 116
Target Start/End: Complemental strand, 4570998 - 4570927
Alignment:
Q  45 tataactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaat 116  Q
    |||||||||||||||| |||||||||||||| |||||||| ||||||| |||||||||||| ||||||||||    
T  4570998 tataactaattttaagcaattgagtccaagaatcttcaaccccaaatttcttcatttgccatataacaaaat 4570927  T

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Target: chr1; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 45 - 117
Target Start/End: Original strand, 50645484 - 50645556
Alignment:
Q  45 tataactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaatg 117  Q
    |||||||||||||||  |||||| ||||||| |||| ||||||||| |||||||||||||| |||||||||||    
T  50645484 tataactaattttaaataattgaatccaagactcttgaactccaaaatccttcatttgccacataacaaaatg 50645556  T

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Target: chr1; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 47 - 122
Target Start/End: Original strand, 21855384 - 21855459
Alignment:
Q  47 taactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaatgggttt 122  Q
    ||||||| |||||||| |||||||||||| |||||||| |||||||||||||| | ||| |||||||||| |||||    
T  21855384 taactaactttaaggagttgagtccaagaatcttcaaccccaaattccttcatctcccatataacaaaatcggttt 21855459  T

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Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 47 - 113
Target Start/End: Original strand, 4014966 - 4015032
Alignment:
Q  47 taactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaa 113  Q
    ||||||| ||||||||||||||||||||| |||||||| ||||||| |||||| ||||| |||||||    
T  4014966 taactaactttaaggaattgagtccaagaatcttcaaccccaaatttcttcatctgccatataacaa 4015032  T

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Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 46 - 116
Target Start/End: Original strand, 39379061 - 39379131
Alignment:
Q  46 ataactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaat 116  Q
    |||||| |||||||| |||||||||||||| |||||||| |||||||||||||| ||||| |||| |||||    
T  39379061 ataactgattttaagaaattgagtccaagactcttcaaccccaaattccttcatctgccatataataaaat 39379131  T

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Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 47 - 116
Target Start/End: Complemental strand, 10219054 - 10218985
Alignment:
Q  47 taactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaat 116  Q
    |||||||||||||| |||||||||||||| |||||||  ||||||| |||||||||||| | ||||||||    
T  10219054 taactaattttaagtaattgagtccaagaatcttcaatcccaaatttcttcatttgccatacaacaaaat 10218985  T

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Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 46 - 111
Target Start/End: Complemental strand, 15961298 - 15961233
Alignment:
Q  46 ataactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataac 111  Q
    |||| ||| ||||| |||||||||||||||||||||| ||||||||| |||||||| ||| |||||    
T  15961298 ataattaactttaaagaattgagtccaagattcttcagctccaaatttcttcattttccatataac 15961233  T

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Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 45 - 116
Target Start/End: Original strand, 17560772 - 17560843
Alignment:
Q  45 tataactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaat 116  Q
    ||||||||||| |||||||| | |||||||| |||||||| ||||||| |||||| ||||| ||||| ||||    
T  17560772 tataactaattataaggaatggtgtccaagaatcttcaaccccaaatttcttcatgtgccatataaccaaat 17560843  T

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Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 47 - 109
Target Start/End: Original strand, 4016773 - 4016835
Alignment:
Q  47 taactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagata 109  Q
    ||||||| |||||  || |||||||| || |||||||||||||||| |||||| |||||||||    
T  4016773 taactaaatttaaacaactgagtccaggaatcttcaactccaaatttcttcatctgccagata 4016835  T

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Target: chr3 (Bit Score: 45; Significance: 2e-16; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 46 - 110
Target Start/End: Complemental strand, 3625804 - 3625740
Alignment:
Q  46 ataactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataa 110  Q
    ||||||||||||||| |||||||||||||| |||||||| ||||||| |||||||||||| ||||    
T  3625804 ataactaattttaagaaattgagtccaagactcttcaaccccaaatttcttcatttgccatataa 3625740  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 46 - 118
Target Start/End: Original strand, 25901279 - 25901351
Alignment:
Q  46 ataactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaatgg 118  Q
    |||||||||||| |  |||||| ||||||| |||| ||||| ||| |||||||||| ||| ||||||||||||    
T  25901279 ataactaatttttaacaattgaatccaagactcttgaactcgaaaatccttcattttccatataacaaaatgg 25901351  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 46 - 118
Target Start/End: Original strand, 25915297 - 25915369
Alignment:
Q  46 ataactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaatgg 118  Q
    |||||||||||| |  |||||| ||||||| |||| ||||| ||| |||||||||| ||| ||||||||||||    
T  25915297 ataactaatttttaacaattgaatccaagactcttgaactcgaaaatccttcattttccatataacaaaatgg 25915369  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 65 - 121
Target Start/End: Complemental strand, 3837960 - 3837904
Alignment:
Q  65 tgagtccaagattcttcaactccaaattccttcatttgccagataacaaaatgggtt 121  Q
    ||||||||||| |||| ||||||||| || ||||||| ||| | |||||||||||||    
T  3837960 tgagtccaagactcttgaactccaaactctttcatttcccacaaaacaaaatgggtt 3837904  T

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Target: scaffold0354 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0354
Description:

Target: scaffold0354; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 36 - 105
Target Start/End: Complemental strand, 7543 - 7474
Alignment:
Q  36 gaagattcgtataactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgcca 105  Q
    ||||||||  ||| ||||||||||||||||||  |||||| || ||||||||||||||||||||||||||    
T  7543 gaagattccgatagctaattttaaggaattgaacccaagactcatcaactccaaattccttcatttgcca 7474  T

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Target: scaffold0867 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: scaffold0867
Description:

Target: scaffold0867; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 46 - 142
Target Start/End: Original strand, 4669 - 4765
Alignment:
Q  46 ataactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaatgggttttcttagaatcataagaaaaa 142  Q
    |||||||||||| |  || ||||||||||| |||| ||||||||||| |||||||||||| |||| |||||| ||||| ||  |||||| |||||||    
T  4669 ataactaattttgaataactgagtccaagactcttgaactccaaatttcttcatttgccatataataaaatgagtttttttgaaatcatgagaaaaa 4765  T

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Target: chr8 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 36 - 134
Target Start/End: Complemental strand, 27618571 - 27618473
Alignment:
Q  36 gaagattcgtataactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaatgggttttcttagaatcat 134  Q
    ||||||||  |||||||| |||||| || ||||||||||| ||||||||||| | ||| | ||||| ||| ||||||||||| |||| |||| ||||||    
T  27618571 gaagattctgataactaactttaagcaactgagtccaagactcttcaactccgagttcttccattttccatataacaaaatgagtttgcttaaaatcat 27618473  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 62 - 114
Target Start/End: Complemental strand, 29390340 - 29390288
Alignment:
Q  62 aattgagtccaagattcttcaactccaaattccttcatttgccagataacaaa 114  Q
    |||| ||| |||||||||||||||||||||||| |||| ||||| ||||||||    
T  29390340 aatttagttcaagattcttcaactccaaattccctcatctgccatataacaaa 29390288  T

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Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 82 - 122
Target Start/End: Original strand, 42846461 - 42846501
Alignment:
Q  82 aactccaaattccttcatttgccagataacaaaatgggttt 122  Q
    ||||||||| |||||||||||||| ||||||||||||||||    
T  42846461 aactccaaaatccttcatttgccaaataacaaaatgggttt 42846501  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 62 - 114
Target Start/End: Original strand, 11338592 - 11338644
Alignment:
Q  62 aattgagtccaagattcttcaactccaaattccttcatttgccagataacaaa 114  Q
    ||||||| ||||||||||| || |||||| || ||||||||||| ||||||||    
T  11338592 aattgagaccaagattcttgaaatccaaactctttcatttgccatataacaaa 11338644  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 62 - 114
Target Start/End: Original strand, 11339435 - 11339487
Alignment:
Q  62 aattgagtccaagattcttcaactccaaattccttcatttgccagataacaaa 114  Q
    ||||||||||||||||||| || |||||| ||  |||||||||| ||||||||    
T  11339435 aattgagtccaagattcttgaaatccaaactcgctcatttgccatataacaaa 11339487  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 62 - 114
Target Start/End: Original strand, 11345117 - 11345169
Alignment:
Q  62 aattgagtccaagattcttcaactccaaattccttcatttgccagataacaaa 114  Q
    ||||||||||||||||||| || |||||| || | ||||||||| ||||||||    
T  11345117 aattgagtccaagattcttgaaatccaaactcttccatttgccatataacaaa 11345169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 47 - 91
Target Start/End: Complemental strand, 29157117 - 29157073
Alignment:
Q  47 taactaattttaaggaattgagtccaagattcttcaactccaaat 91  Q
    |||||||||||||||| ||||||||| |  |||||||||||||||    
T  29157117 taactaattttaaggagttgagtccatggctcttcaactccaaat 29157073  T

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Target: scaffold0097 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0097
Description:

Target: scaffold0097; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 204 - 269
Target Start/End: Original strand, 16530 - 16595
Alignment:
Q  204 gagggagcaacaattgtgtatatgtctctgtccccaaatcaagtgagatcatcacaaattgttcaa 269  Q
    |||||||||||| |||||| ||||||||  |||||||||| || ||||| ||||||||||||||||    
T  16530 gagggagcaacatttgtgtgtatgtctccatccccaaatcgagggagatgatcacaaattgttcaa 16595  T

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Target: scaffold0242 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: scaffold0242
Description:

Target: scaffold0242; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 53 - 122
Target Start/End: Original strand, 13737 - 13806
Alignment:
Q  53 attttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaatgggttt 122  Q
    |||||||| || |||||||||||||| |||  ||| ||||||||||| ||||| |||| ||||| |||||    
T  13737 attttaagaaactgagtccaagattcatcatttcctaattccttcatctgccatataagaaaatcggttt 13806  T

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Target: scaffold0242; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 53 - 122
Target Start/End: Original strand, 22572 - 22641
Alignment:
Q  53 attttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaatgggttt 122  Q
    |||||||| || |||||||||||||| |||  ||| ||||||||||| ||||| |||| ||||| |||||    
T  22572 attttaagaaactgagtccaagattcatcatttcctaattccttcatctgccatataagaaaatcggttt 22641  T

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Target: scaffold0267 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0267
Description:

Target: scaffold0267; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 65 - 121
Target Start/End: Complemental strand, 13441 - 13385
Alignment:
Q  65 tgagtccaagattcttcaactccaaattccttcatttgccagataacaaaatgggtt 121  Q
    ||||||||||| |||| ||||||||| || ||||||| ||| | |||||||||||||    
T  13441 tgagtccaagactcttgaactccaaactctttcatttcccacaaaacaaaatgggtt 13385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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