View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17287_low_26 (Length: 420)
Name: NF17287_low_26
Description: NF17287
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17287_low_26 |
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Alignment Details
Target: chr4 (Bit Score: 345; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 20 - 408
Target Start/End: Original strand, 53790077 - 53790465
Alignment:
| Q |
20 |
aatatcaaaagaattaggatgttttcaacaatctaactatcatgcacatgataggcataggtacacatttggttatgataacttcactggatcttataag |
119 |
Q |
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| T |
53790077 |
aatatcaaaagaattaggatcttttcaacaatctaactatcatgcacatgataggcataggtacatatttggttatgataacttcactggatcttacaag |
53790176 |
T |
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| Q |
120 |
gtagtgttaatgtgttctggcatggtgaaaattttcaatataggtgataatatttggactgaaatttcaagttttcctcgttttgagcacgatgtttctc |
219 |
Q |
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| T |
53790177 |
gtagtgttaatgtgttctggcaaggtgaaaattttcaatataggtgataatatttggactgaaatttcaagttttcctcgttttgaccacgatgtttctc |
53790276 |
T |
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| Q |
220 |
ttggctctgatcgtgtgaataatggagtgtatttgaatggaactgttaactggattgcctttcaagatgatttgagttgtagtacttattctaggatcca |
319 |
Q |
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| T |
53790277 |
ttggctctgatcgtgtgaataatggagtgtatttgaatggaactgttaactggattgcctttcaagatgatttgagttgtagtacttattcttggatgca |
53790376 |
T |
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| Q |
320 |
gagggatactcctcttgagcaatatatgattatatcgcttgatcttggtacggagacatacaaacaattgcagcctcctggtggtgatg |
408 |
Q |
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| T |
53790377 |
gagggatactactcttgagcaatatatgattatcttgcttgatcttggtacggagacatacaaacaattgcagcctcctcgtggtgatg |
53790465 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000004; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 336 - 411
Target Start/End: Complemental strand, 19326206 - 19326131
Alignment:
| Q |
336 |
gagcaatatatgattatatcgcttgatcttggtacggagacatacaaacaattgcagcctcctggtggtgatgatg |
411 |
Q |
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| T |
19326206 |
gagcaatttatgattatctcccttgatcttggtactgagacatacaagcaatttcagacccctcgtggtgttgatg |
19326131 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 78 - 225
Target Start/End: Complemental strand, 19326443 - 19326296
Alignment:
| Q |
78 |
aggtacacatttggttatgataacttcactggatcttataaggtagtgttaatgtgttctggcatggtgaaaattttcaatataggtgataatatttgga |
177 |
Q |
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|||| ||||||||| |||||||| | |||||| |||||||||| ||| | || ||||| | ||||||| |||||| | | ||||||||||||||| |
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| T |
19326443 |
aggttcacatttgggtatgataattcaactggaacttataaggtggtgctcttgagttctagtgaggtgaaagttttcagtttgagtgataatatttgga |
19326344 |
T |
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| Q |
178 |
ctgaaatttcaagttttcctcgttttgagcacgatgtttctcttggct |
225 |
Q |
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| T |
19326343 |
gaaaaatttcaagctttcctccttttgaccatgctgttactcttggct |
19326296 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 344 - 386
Target Start/End: Complemental strand, 22473365 - 22473323
Alignment:
| Q |
344 |
tatgattatatcgcttgatcttggtacggagacatacaaacaa |
386 |
Q |
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| T |
22473365 |
tatgattatatctcttgatctaggtacagagacatacaaacaa |
22473323 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 334 - 388
Target Start/End: Complemental strand, 24254649 - 24254595
Alignment:
| Q |
334 |
ttgagcaatatatgattatatcgcttgatcttggtacggagacatacaaacaatt |
388 |
Q |
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| T |
24254649 |
ttgagcaattcatgattatctcccttgatcttggtactgagacatacaagcaatt |
24254595 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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