View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17287_low_29 (Length: 404)
Name: NF17287_low_29
Description: NF17287
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17287_low_29 |
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Alignment Details
Target: chr2 (Bit Score: 277; Significance: 1e-155; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 20 - 393
Target Start/End: Complemental strand, 33807355 - 33806985
Alignment:
| Q |
20 |
acgagtattttagaacactttttaaa-gattctaaatagaaaaattaatttttaaaaaagatgaatattataattacaatgtattgaatacataaatttt |
118 |
Q |
| |
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||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||| |
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| T |
33807355 |
acgagtattttagaacattttttaaaagattctaaatagaaaaattaatttttaaaaaagataaatattataattacaatgtattgaatatataaatttt |
33807256 |
T |
|
| Q |
119 |
cataaaaatttgtttcatccaatcttatatttaagaaaaagggaaatgttaacttgtgtcatcatatnnnnnnnnncacatccttttcaattttatcctt |
218 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||| |||||||||||||| |
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| T |
33807255 |
aataaaaacttgtttcatccaatcttatatttaagaaaaagggaaatgttaacttgt--catcata--aaaaaaaacacatccttatcaattttatcctt |
33807160 |
T |
|
| Q |
219 |
gaaagtgtttcgtaagtgttgaaaacatcgaaatagttatagtaaatttaatgtaagggtaaatttgaaattctagtattaaatataataattataatag |
318 |
Q |
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|
|||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33807159 |
gaaagtgtttcgtaagtgttgaaaacattgaaatagttatagtaaatttaatttaagggtaaatttgaaattctagtattaaatataataattataatat |
33807060 |
T |
|
| Q |
319 |
acttaacttatttgcttgctatgttatttccactttccaacttgagctccagctagctttgttatattctttctt |
393 |
Q |
| |
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|||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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|
| T |
33807059 |
acttaaattatttgcttgctatgttatttccactttccaacttgagcttcagctagctttgttatattctttctt |
33806985 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 20 - 393
Target Start/End: Complemental strand, 33802873 - 33802503
Alignment:
| Q |
20 |
acgagtattttagaacactttttaaa-gattctaaatagaaaaattaatttttaaaaaagatgaatattataattacaatgtattgaatacataaatttt |
118 |
Q |
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||||||||||||||||| |||||||| ||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||| |
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|
| T |
33802873 |
acgagtattttagaacattttttaaaagattctatatagaaaaattaatttttaaaaaagataaatattataattacaatgtattgaatatataaatttt |
33802774 |
T |
|
| Q |
119 |
cataaaaatttgtttcatccaatcttatatttaagaaaaagggaaatgttaacttgtgtcatcatatnnnnnnnnncacatccttttcaattttatcctt |
218 |
Q |
| |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||| |||||||||||||| |
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| T |
33802773 |
aataaaaacttgtttcatccaatcttatatttaagaaaaagggaaatgttaacttgt--catcata--aaaaaaaacacatccttatcaattttatcctt |
33802678 |
T |
|
| Q |
219 |
gaaagtgtttcgtaagtgttgaaaacatcgaaatagttatagtaaatttaatgtaagggtaaatttgaaattctagtattaaatataataattataatag |
318 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33802677 |
gaaagtgtttcgtaagtgttgaaaacattgaaatagttatagtaaatttaatttaagggtaaatttgaaattctagtattaaatataataattataatat |
33802578 |
T |
|
| Q |
319 |
acttaacttatttgcttgctatgttatttccactttccaacttgagctccagctagctttgttatattctttctt |
393 |
Q |
| |
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|||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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|
| T |
33802577 |
acttaaattatttgcttgctatgttatttccactttccaacttgagcttcagctagctttgttatattctttctt |
33802503 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 250 - 314
Target Start/End: Original strand, 44207967 - 44208031
Alignment:
| Q |
250 |
aatagttatagtaaatttaatgtaagggtaaatttgaaattctagtattaaatataataattata |
314 |
Q |
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|||||||| | |||||||||| |||||||||||||| ||| | | ||||||||||||||||||| |
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| T |
44207967 |
aatagttacattaaatttaatttaagggtaaatttggaatagtggcattaaatataataattata |
44208031 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 202 - 243
Target Start/End: Original strand, 9301258 - 9301299
Alignment:
| Q |
202 |
ttttcaattttatccttgaaagtgtttcgtaagtgttgaaaa |
243 |
Q |
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||||||||||||||||||||||||||| |||||||||||| |
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| T |
9301258 |
ttttcaattttatccttgaaagtgttttaaaagtgttgaaaa |
9301299 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000009; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 92 - 127
Target Start/End: Complemental strand, 18945179 - 18945144
Alignment:
| Q |
92 |
ttacaatgtattgaatacataaattttcataaaaat |
127 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||| |
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|
| T |
18945179 |
ttacaatgtattgaatacacaaattttcataaaaat |
18945144 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 36 - 129
Target Start/End: Complemental strand, 27004133 - 27004039
Alignment:
| Q |
36 |
actttttaaagattctaaatagaaaaattaatttttaaaaaagatgaatattat-aattacaatgtattgaatacataaattttcataaaaattt |
129 |
Q |
| |
|
||||||||||||| |||||| ||||| || |||||||||||| | ||| |||| |||| ||||| ||||| |||| || ||||| ||||||||| |
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| T |
27004133 |
actttttaaagatcctaaatttaaaaaatattttttaaaaaagttaaatgttatcaatttcaatgcattgattacacaatttttcttaaaaattt |
27004039 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 95 - 129
Target Start/End: Original strand, 51039811 - 51039845
Alignment:
| Q |
95 |
caatgtattgaatacataaattttcataaaaattt |
129 |
Q |
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||||| ||||||||||||||||||||||||||||| |
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| T |
51039811 |
caatgaattgaatacataaattttcataaaaattt |
51039845 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 31 - 71
Target Start/End: Complemental strand, 29241251 - 29241211
Alignment:
| Q |
31 |
agaacactttttaaagattctaaatagaaaaattaattttt |
71 |
Q |
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||||||||||||||||||||| ||| |||||||||||||| |
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| T |
29241251 |
agaacactttttaaagattctcaattaaaaaattaattttt |
29241211 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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