View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17287_low_30 (Length: 397)
Name: NF17287_low_30
Description: NF17287
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17287_low_30 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 342; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 11 - 380
Target Start/End: Original strand, 28823568 - 28823937
Alignment:
| Q |
11 |
agaatatatattataaggcaaacctaatacaagacattgaaacattgtacaaaggtaaaattaaggatgatgctgcaactcaaagtagtgttcataacct |
110 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
28823568 |
agaatatatattataaggcaaacctaatacaagacattgaaacattgtacaaaggtaaaattaaggatgatgctgcaactcaagctagtgttcataacct |
28823667 |
T |
|
| Q |
111 |
tggtgtgttggaacatattaattagttatgattgtgtacttggagattcacaaacaagtatagtattaaacagtggatgtagcacatttaacgcatcaaa |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
28823668 |
tggtgtgttggaacatattaattagttatgattgtgtacttggagattcacaaacaagtatagtattaaacagttcatgtagcacatttaacgcatcaaa |
28823767 |
T |
|
| Q |
211 |
cttgcgtagcttctatgcaaatatcaatggaacatttttagatttgaagaatcaaattagcaatcaaagcaagcactttgccacatcacaacaagccata |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||| |
|
|
| T |
28823768 |
cttgcgtagcttctatgcaaatatcaatggaacatttttagatttgaagaatcaaattagcaatgaaagcaaacactttgccacatcacaacaagccata |
28823867 |
T |
|
| Q |
311 |
ggagaggtaattgtattttctatgtttcaatgtagaaattacctctccaaaaatgattgtgttggttgct |
380 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28823868 |
ggtgaggtaattgtattttctatgtttcaatgtagaaattacctctccaaaaatgattgtgttggttgct |
28823937 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 223 - 380
Target Start/End: Original strand, 28833033 - 28833193
Alignment:
| Q |
223 |
ctatgcaaatatcaatggaacatttttagatttgaagaatcaaattagcaatcaaagcaagcactttgccacatcacaa---caagccataggagaggta |
319 |
Q |
| |
|
||||| ||| ||||| | ||| ||| ||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||| |
|
|
| T |
28833033 |
ctatgaaaacatcaacgaaacttttctagatttgagaaatcaaattagcaatcaaagcaagcactttgccacatcacaacaacaagccatagatgaggta |
28833132 |
T |
|
| Q |
320 |
attgtattttctatgtttcaatgtagaaattacctctccaaaaatgattgtgttggttgct |
380 |
Q |
| |
|
| |||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
28833133 |
aaagtatattctatgtttcaatgtagaaattacctctccaaaaatgattgtgttgcttgct |
28833193 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University