View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17287_low_31 (Length: 396)
Name: NF17287_low_31
Description: NF17287
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17287_low_31 |
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Alignment Details
Target: chr1 (Bit Score: 309; Significance: 1e-174; HSPs: 10)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 41 - 380
Target Start/End: Original strand, 48680804 - 48681140
Alignment:
| Q |
41 |
aatcctctttcacattcctcactcttattcttcgtgttcccttatttgtctctttgcttcctaatgtatcagaagctagatcattgctcaatcctttaca |
140 |
Q |
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| T |
48680804 |
aatcctctttcacattcctcactcttattcttcgtgttcccttatttgtctctttgcttcctaatgtatcagaagctagatcattgctcaatcctttaca |
48680903 |
T |
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| Q |
141 |
agggaaagaaggtgtaattggagaggtaaatggagtgttcaggacattgaaagaagactctggtccatcccctggagttgggcacaaacttaaaaaagct |
240 |
Q |
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| T |
48680904 |
agggaaagaaggtgtaattggagaggtaaatggagtgttcaggacattgaaagaagactctggtccatcccctggagttgggcacaaactt-aaaaagct |
48681002 |
T |
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| Q |
241 |
tcaaattattggtgggatgaaggactctggtcctagtccaggtgaagggcacaagtacataaccaacaacaatcactcataacataaattccttttcttt |
340 |
Q |
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| T |
48681003 |
tcaaattattggtgggatgaagga--ctggtcctagtccaggtgaagggcacaagtacataaccaacaacaatcactcataacataaattccaattcttt |
48681100 |
T |
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| Q |
341 |
ttgcttttatttgcaccgcactcatataaatactcaatac |
380 |
Q |
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| T |
48681101 |
ttgcttttatttgcaccgctctcatataaatactcaatac |
48681140 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 105 - 280
Target Start/End: Original strand, 48697712 - 48697883
Alignment:
| Q |
105 |
tgtatcagaagctagatcattgctcaatcctttacaagggaaagaaggtgtaattggagaggtaaatggagtgttcaggacattgaaagaagactctggt |
204 |
Q |
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| T |
48697712 |
tgtatcagaagcaaggccattgcttagtcctttacaaggcaaagaagctgtaattggagaggtaaatggagtcttcaggacattgaaaggag---ctggt |
48697808 |
T |
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| Q |
205 |
ccatcccctggagttgggcacaaacttaaaaaagcttcaaattattggtgggatgaaggactctggtcctagtcca |
280 |
Q |
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| T |
48697809 |
ccatcccctggaattggacacaggctt-aaaaagcttcaaattattggagggatgaaggattctggtccaagtcca |
48697883 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 50 - 236
Target Start/End: Original strand, 48687373 - 48687556
Alignment:
| Q |
50 |
tcacattcctcactcttattcttcgtgttcccttatttgtctctttgcttcctaatgtatcagaagctagatcattgctcaatcctttacaagggaaaga |
149 |
Q |
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| T |
48687373 |
tcacattcctcacttttattcttcttgtttctttgtttgtctctttacttcctaatgtatcagaagctaggccatttcttagtccactacaaggcagaga |
48687472 |
T |
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| Q |
150 |
aggtgtaattggagaggtaaatggagtgttcaggacattgaaagaagactctggtccatcccctggagttgggcacaaacttaaaaa |
236 |
Q |
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| T |
48687473 |
aggtgtaattggagaggtaaatggagttttcaggacattaaaagatg---ctggtccatcccctggtgttggacacaagctcaaaaa |
48687556 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 105 - 226
Target Start/End: Original strand, 48700997 - 48701115
Alignment:
| Q |
105 |
tgtatcagaagctagatcattgctcaatcctttacaagggaaagaaggtgtaattggagaggtaaatggagtgttcaggacattgaaagaagactctggt |
204 |
Q |
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| T |
48700997 |
tgtatcagaagcaaggccattgcttagtccattacaaggcaaagaaggcgtaattggagaggtaaatggagtcttcaggacattgaaaggag---ctggt |
48701093 |
T |
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| Q |
205 |
ccatcccctggagttgggcaca |
226 |
Q |
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| T |
48701094 |
ccatcccctggagttggacaca |
48701115 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 240 - 322
Target Start/End: Original strand, 48693926 - 48694008
Alignment:
| Q |
240 |
ttcaaattattggtgggatgaaggactctggtcctagtccaggtgaagggcacaagtacataaccaacaacaatcactcataa |
322 |
Q |
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| T |
48693926 |
ttcaagttattggagtgattaagcattctggacctagtccaggtgaagggcacaagtacataaccaacaataatcattcataa |
48694008 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 249 - 322
Target Start/End: Original strand, 48687610 - 48687683
Alignment:
| Q |
249 |
ttggtgggatgaaggactctggtcctagtccaggtgaagggcacaagtacataaccaacaacaatcactcataa |
322 |
Q |
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| T |
48687610 |
ttggtgtgattaagcattctggtcctagtcctggtgaagggcacaagtatataaccaacaacaataactcataa |
48687683 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 105 - 273
Target Start/End: Original strand, 48693696 - 48693863
Alignment:
| Q |
105 |
tgtatcagaagctagatcattgctcaatcctttacaagggaaagaaggtgtaattggagagg---taaatggagtgttcaggacattgaaagaagactct |
201 |
Q |
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| T |
48693696 |
tgtatcagaagcaaggccattgcttagtccattacaaagcaaagaaggtgaaattggagaggtgatgaatggagttttcaggacattgaaaggag---ct |
48693792 |
T |
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| Q |
202 |
ggtccatcccctggagttgggcacaaacttaaaaaagcttcaaattattggtgggatgaaggactctggtcc |
273 |
Q |
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| T |
48693793 |
ggtccatctcctgggattggacacaggctt-aaaaagcttcaaaatcttgaagggatgaaggattctggtcc |
48693863 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 240 - 322
Target Start/End: Original strand, 48697945 - 48698027
Alignment:
| Q |
240 |
ttcaaattattggtgggatgaaggactctggtcctagtccaggtgaagggcacaagtacataaccaacaacaatcactcataa |
322 |
Q |
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| T |
48697945 |
ttcaagttattggagtgattaagcattctggacctagtccaggtgaagggcacaagtatataatcagcaacaaccactcataa |
48698027 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 36 - 73
Target Start/End: Original strand, 48700946 - 48700983
Alignment:
| Q |
36 |
actcaaatcctctttcacattcctcactcttattcttc |
73 |
Q |
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| T |
48700946 |
actcaaatcctctatcacattcctcactcttattcttc |
48700983 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 31 - 73
Target Start/End: Original strand, 48693640 - 48693682
Alignment:
| Q |
31 |
ataatactcaaatcctctttcacattcctcactcttattcttc |
73 |
Q |
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| T |
48693640 |
ataagactcaaatcctctgtcacattcttcactcttattcttc |
48693682 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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