View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17287_low_32 (Length: 393)
Name: NF17287_low_32
Description: NF17287
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17287_low_32 |
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Alignment Details
Target: chr3 (Bit Score: 302; Significance: 1e-170; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 14 - 355
Target Start/End: Complemental strand, 37108521 - 37108180
Alignment:
| Q |
14 |
agcaaagggtggttcaccaaaagcaagagttgcatcatacaaagtttgttggcctccaattaatggcgacgagtgctttgatgcagacatacttgcagca |
113 |
Q |
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| T |
37108521 |
agcaaagggtggttcaccaaaagcaagagttgcatcatacaaagtttgttggcctccaattaatggcgacgagtgctttgatgcagacatacttgcagca |
37108422 |
T |
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| Q |
114 |
tttgatgcagctatccatgatggtgttgatgtcttgtctgtgtcacttggtggctctgcttctaaccttttcaatgatagtgttgctattggatctttcc |
213 |
Q |
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| T |
37108421 |
tttgatgcagctatccatgatggtgttgatgtcttgtctgtgtcacttggtggctctgcttctaaccttttcaatgatagtgttgctattggatctttcc |
37108322 |
T |
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| Q |
214 |
atgctgctaagaaaggtattgttgttgtttgctctgctggcaatgatggaccaaaggatgctactgcagaaaatcttgctccttggtatatcacagtcgg |
313 |
Q |
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| T |
37108321 |
atgctgctaagaaaggtattgttgttgtttgctctgctggcaatagtggaccaaatgatgctactgcatcaaatctagctccttggtatatcacagttgg |
37108222 |
T |
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| Q |
314 |
tgccagtacaatggatagagagttcgctagttatgttcttct |
355 |
Q |
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| T |
37108221 |
tgccagcacaatggatagagagttccctagttatgttgttct |
37108180 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 33 - 145
Target Start/End: Original strand, 39188767 - 39188879
Alignment:
| Q |
33 |
aaagcaagagttgcatcatacaaagtttgttggcctccaattaatggcgacgagtgctttgatgcagacatacttgcagcatttgatgcagctatccatg |
132 |
Q |
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| T |
39188767 |
aaagcaagagttgctgcttacaaagtctgctggccaccaattgatggcagcgaatgctttgatgctgatatcatggcagcctttgatatggctattcatg |
39188866 |
T |
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| Q |
133 |
atggtgttgatgt |
145 |
Q |
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| T |
39188867 |
atggggttgatgt |
39188879 |
T |
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