View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17287_low_33 (Length: 393)
Name: NF17287_low_33
Description: NF17287
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17287_low_33 |
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Alignment Details
Target: chr7 (Bit Score: 339; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 1 - 380
Target Start/End: Complemental strand, 44694898 - 44694509
Alignment:
| Q |
1 |
aacatatcttcccagccgaactatgttccaccaatcatcgatcaggtcacaaattagacacaatatcaaacatgcaatcttagagcaatgcatttccaat |
100 |
Q |
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|||||||||||| ||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44694898 |
aacatatcttcctagccgaactatattccaccaattatcgatcaggtcacaaattagacacaatatcaaacatgcaatcttagagcaatgcatttccaat |
44694799 |
T |
|
| Q |
101 |
aaatcctacaatatcaaacactga----------gacactagacacgacattaaagctgacacggtaaccacatgtgtcagacattgtgtaccggacacg |
190 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44694798 |
aaatcctacaatatcaaacactgacgcaaacacagacactagacacgacattaaagctgacacggtaaccacatgtgtcagacattgtgtaccggacacg |
44694699 |
T |
|
| Q |
191 |
cctttagtctggcatataattgccttatcaatgccaaaactatgaagattttttaatgctaatttgtatgcctaaacattccttatgtataaagaagtgc |
290 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44694698 |
cctttagtatggcatataattgccttatcaatgccaaaactatgaagattttttaatgctaatttgtatgcctaaacattccttatgtataaagaagtgc |
44694599 |
T |
|
| Q |
291 |
agaaagacatgaaagcataaaaggaaattaatgatgaaataaaccttgatattgggaatagagtatgccaaattccccaagtgagacatg |
380 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44694598 |
agaaagacatgaaagcataaaaggaaattaatgatgaaataaaccttgatattgggaatagagtatgccaaattccccaagtgagacatg |
44694509 |
T |
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