View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17287_low_34 (Length: 377)

Name: NF17287_low_34
Description: NF17287
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17287_low_34
NF17287_low_34
[»] chr1 (6 HSPs)
chr1 (40-361)||(38678781-38679098)
chr1 (51-160)||(17371644-17371753)
chr1 (54-196)||(5609538-5609680)
chr1 (54-121)||(48949645-48949712)
chr1 (54-157)||(24538686-24538789)
chr1 (58-157)||(51113518-51113617)
[»] chr5 (8 HSPs)
chr5 (54-157)||(22767158-22767261)
chr5 (54-157)||(4268298-4268401)
chr5 (55-157)||(23075032-23075134)
chr5 (141-201)||(12779019-12779079)
chr5 (54-157)||(27292633-27292735)
chr5 (54-137)||(27532811-27532894)
chr5 (54-121)||(41940658-41940725)
chr5 (141-201)||(12717795-12717855)
[»] chr8 (5 HSPs)
chr8 (54-200)||(11870463-11870609)
chr8 (54-196)||(40588576-40588718)
chr8 (54-196)||(477902-478044)
chr8 (40-196)||(13415208-13415364)
chr8 (2-40)||(43924488-43924526)
[»] chr4 (10 HSPs)
chr4 (51-204)||(53661213-53661369)
chr4 (54-196)||(51734818-51734960)
chr4 (54-113)||(23095413-23095472)
chr4 (51-196)||(21321726-21321871)
chr4 (54-121)||(32576969-32577036)
chr4 (54-121)||(37245773-37245840)
chr4 (54-157)||(44935967-44936070)
chr4 (54-121)||(49951512-49951579)
chr4 (54-121)||(51259450-51259517)
chr4 (2-38)||(47377610-47377646)
[»] chr7 (9 HSPs)
chr7 (54-196)||(9328448-9328590)
chr7 (54-196)||(16732132-16732274)
chr7 (54-196)||(17710266-17710408)
chr7 (54-196)||(24251638-24251777)
chr7 (54-121)||(29200876-29200943)
chr7 (54-157)||(44481286-44481389)
chr7 (57-91)||(43782988-43783022)
chr7 (140-201)||(6216578-6216639)
chr7 (54-159)||(33224443-33224548)
[»] chr2 (11 HSPs)
chr2 (51-120)||(10244492-10244561)
chr2 (54-157)||(9710154-9710257)
chr2 (1-38)||(30545446-30545483)
chr2 (1-38)||(44154276-44154313)
chr2 (54-121)||(34695825-34695892)
chr2 (54-121)||(34718237-34718304)
chr2 (51-157)||(88755-88861)
chr2 (1-38)||(30544727-30544764)
chr2 (1-38)||(44154993-44155030)
chr2 (40-88)||(1417935-1417983)
chr2 (54-86)||(36445475-36445507)
[»] chr3 (5 HSPs)
chr3 (54-157)||(34497257-34497360)
chr3 (54-157)||(55199710-55199813)
chr3 (54-200)||(647012-647158)
chr3 (54-119)||(31341648-31341713)
chr3 (54-157)||(27608788-27608891)
[»] chr6 (1 HSPs)
chr6 (54-157)||(34104350-34104453)
[»] scaffold0922 (1 HSPs)
scaffold0922 (56-157)||(149-250)


Alignment Details
Target: chr1 (Bit Score: 232; Significance: 1e-128; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 40 - 361
Target Start/End: Complemental strand, 38679098 - 38678781
Alignment:
40 tatttataaagtagctttacattccaacttcgaggtaaagtttattaggcgaaaaatgaacatgattactcataccttagctcagacgacatgttcttat 139  Q
    ||||||||| ||||||||||||||||||||| |||| ||||||||||||||||||||||| ||||||||||||||||||||| ||||||||| |||||||    
38679098 tatttataaggtagctttacattccaacttcaaggtgaagtttattaggcgaaaaatgaatatgattactcataccttagctaagacgacatattcttat 38678999  T
140 gctagtcaccatatttttgagatttctccgatttgtattgaacatttgttgattaataatatcaggaaagtttatcaagccaatagtaattactccatct 239  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
38678998 gctagtcaccatattttttagatttctccgatttgtattgaacatttgttgattaataatatcagtaaagtttatcaagccaatagtaattactccatct 38678899  T
240 atcccacaccatatgacattttaacnnnnnnnttgttgtattttataggtcgttttacaatatcatcaatacaattttaatgtttgtcttcttccaaaaa 339  Q
    |||||| ||||||||||||||||||       ||||||||||||||||||||||||||||||||    ||||||| ||||||||| ||||||||||||||    
38678898 atcccagaccatatgacattttaacaaacaaattgttgtattttataggtcgttttacaatatc----atacaatcttaatgtttatcttcttccaaaaa 38678803  T
340 catttggatgacatagtaaaag 361  Q
     |||||||||| ||||||||||    
38678802 tatttggatgagatagtaaaag 38678781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 51 - 160
Target Start/End: Original strand, 17371644 - 17371753
Alignment:
51 tagctttacattccaacttcgaggtaaagtttattaggcgaaaaatgaacatgattactcataccttagctcagacgacatgttcttatgctagtcacca 150  Q
    |||||||||||||||||||| |||| |||||||||||| || ||  ||| ||| |  ||||||||||||||  | || |||||||||  ||||||||||     
17371644 tagctttacattccaacttcaaggtgaagtttattaggagacaagcgaatatggtcgctcataccttagctagggcggcatgttcttgagctagtcaccg 17371743  T
151 tatttttgag 160  Q
    ||||||||||    
17371744 tatttttgag 17371753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 54 - 196
Target Start/End: Original strand, 5609538 - 5609680
Alignment:
54 ctttacattccaacttcgaggtaaagtttattaggcgaaaaatgaacatgattactcataccttagctcagacgacatgttcttatgctagtcaccatat 153  Q
    |||||||||||||||||||||| |||||| ||||| || ||  ||||||| || ||||||| ||||||  | || |||||||||  |||||||||  |||    
5609538 ctttacattccaacttcgaggtgaagtttgttaggagacaagcgaacatggttgctcatacattagctagggcggcatgttcttgggctagtcactgtat 5609637  T
154 ttttgagatttctccgatttgtattgaacatttgttgattaat 196  Q
    |||| |   || |||   |||||||||||||| ||||||||||    
5609638 tttttattcttatccttcttgtattgaacattggttgattaat 5609680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 54 - 121
Target Start/End: Complemental strand, 48949712 - 48949645
Alignment:
54 ctttacattccaacttcgaggtaaagtttattaggcgaaaaatgaacatgattactcataccttagct 121  Q
    |||||||||||||||||||||| |||||| ||||| || ||  ||||||| ||||||||| |||||||    
48949712 ctttacattccaacttcgaggtgaagtttgttaggagacaagcgaacatggttactcatagcttagct 48949645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 54 - 157
Target Start/End: Original strand, 24538686 - 24538789
Alignment:
54 ctttacattccaacttcgaggtaaagtttattaggcgaaaaatgaacatgattactcataccttagctcagacgacatgttcttatgctagtcaccatat 153  Q
    |||||||||| ||||| ||||| |||||  |||||  | ||  |||||||||| ||||||| || |||  ||| ||||||||||  ||||||||||||||    
24538686 ctttacattctaactttgaggtgaagttcgttaggaaacaagcgaacatgattgctcatacttttgctaggacaacatgttcttcggctagtcaccatat 24538785  T
154 tttt 157  Q
    ||||    
24538786 tttt 24538789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 58 - 157
Target Start/End: Original strand, 51113518 - 51113617
Alignment:
58 acattccaacttcgaggtaaagtttattaggcgaaaaatgaacatgattactcataccttagctcagacgacatgttcttatgctagtcaccatattttt 157  Q
    |||||||||||||||||| |||||| ||||| || ||  ||||||| || |||||| |||||||  | |||| |||||||  | |||||||| |||||||    
51113518 acattccaacttcgaggtgaagtttgttaggagagaagcgaacatggttgctcatagcttagctagggcgacctgttcttgggttagtcaccgtattttt 51113617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 48; Significance: 2e-18; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 54 - 157
Target Start/End: Complemental strand, 22767261 - 22767158
Alignment:
54 ctttacattccaacttcgaggtaaagtttattaggcgaaaaatgaacatgattactcataccttagctcagacgacatgttcttatgctagtcaccatat 153  Q
    |||||||||||||||||||||| |||||| ||||| || ||| ||||||| || ||||||| |||||| || || |||||||||  |||||||||| |||    
22767261 ctttacattccaacttcgaggtgaagtttgttaggagacaaacgaacatggttgctcatactttagctaaggcggcatgttcttgggctagtcaccgtat 22767162  T
154 tttt 157  Q
    ||||    
22767161 tttt 22767158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 54 - 157
Target Start/End: Original strand, 4268298 - 4268401
Alignment:
54 ctttacattccaacttcgaggtaaagtttattaggcgaaaaatgaacatgattactcataccttagctcagacgacatgttcttatgctagtcaccatat 153  Q
    ||||||||||||||||| |||| |||||||||||| || ||  ||||||| || ||||||| ||| ||  | || |||||||||  |||||||||| |||    
4268298 ctttacattccaacttcaaggtgaagtttattaggagacaagcgaacatggttgctcatactttatctagggcggcatgttcttgggctagtcaccgtat 4268397  T
154 tttt 157  Q
    ||||    
4268398 tttt 4268401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 55 - 157
Target Start/End: Original strand, 23075032 - 23075134
Alignment:
55 tttacattccaacttcgaggtaaagtttattaggcgaaaaatgaacatgattactcataccttagctcagacgacatgttcttatgctagtcaccatatt 154  Q
    |||||||||||||||  |||| |||||| ||||| || ||  ||||||| || ||||||  ||||||  ||||||||||||||  |||||||||| ||||    
23075032 tttacattccaactttaaggtgaagtttgttaggagacaagcgaacatggttgctcatagtttagctaggacgacatgttcttgggctagtcaccgtatt 23075131  T
155 ttt 157  Q
    |||    
23075132 ttt 23075134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 141 - 201
Target Start/End: Original strand, 12779019 - 12779079
Alignment:
141 ctagtcaccatatttttgagatttctccgatttgtattgaacatttgttgattaataatat 201  Q
    ||||||||||| ||| |||||||||||| | ||||| |||||| || ||||||||||||||    
12779019 ctagtcaccatgtttgtgagatttctcctacttgtaatgaacaattattgattaataatat 12779079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 54 - 157
Target Start/End: Original strand, 27292633 - 27292735
Alignment:
54 ctttacattccaacttcgaggtaaagtttattaggcgaaaaatgaacatgattactcataccttagctcagacgacatgttcttatgctagtcaccatat 153  Q
    ||||||||||||||||| | || |||||||| ||| || ||  ||||||| || ||||||| |||||| ||  |||||||||||  |||||||||| |||    
27292633 ctttacattccaacttcaaagtgaagtttatcaggagacaagcgaacatggttgctcatactttagct-aggggacatgttcttgggctagtcaccgtat 27292731  T
154 tttt 157  Q
    ||||    
27292732 tttt 27292735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 54 - 137
Target Start/End: Complemental strand, 27532894 - 27532811
Alignment:
54 ctttacattccaacttcgaggtaaagtttattaggcgaaaaatgaacatgattactcataccttagctcagacgacatgttctt 137  Q
    |||||||||||||||||||||| |||||| ||||| || ||  ||||||| ||||| |||| ||||||  |  |||||||||||    
27532894 ctttacattccaacttcgaggtgaagtttgttaggagacaagcgaacatggttacttatactttagctagggtgacatgttctt 27532811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 54 - 121
Target Start/End: Complemental strand, 41940725 - 41940658
Alignment:
54 ctttacattccaacttcgaggtaaagtttattaggcgaaaaatgaacatgattactcataccttagct 121  Q
    |||||||||||||||||||||| |||||| ||||| || ||  |||||||||| || |||| ||||||    
41940725 ctttacattccaacttcgaggtgaagtttgttaggagacaagagaacatgattgctaatactttagct 41940658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 141 - 201
Target Start/End: Original strand, 12717795 - 12717855
Alignment:
141 ctagtcaccatatttttgagatttctccgatttgtattgaacatttgttgattaataatat 201  Q
    ||||||||||| ||| |||||||||||| | ||||| |||||| || ||||||||| ||||    
12717795 ctagtcaccatgtttgtgagatttctcctacttgtaatgaacaattattgattaatgatat 12717855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 54 - 200
Target Start/End: Original strand, 11870463 - 11870609
Alignment:
54 ctttacattccaacttcgaggtaaagtttattaggcgaaaaatgaacatgattactcataccttagctcagacgacatgttcttatgctagtcaccatat 153  Q
    |||||||||| ||||||||||| |||||| ||||| || ||  ||||||| || ||||||| ||||||  | | || |||||||  |||| |||||||||    
11870463 ctttacattctaacttcgaggtgaagtttgttaggagacaagcgaacatggttgctcatactttagctagggcaacctgttcttgggctaatcaccatat 11870562  T
154 ttttgagatttctccgatttgtattgaacatttgttgattaataata 200  Q
    |||| |   || ||| | ||||||||||||||||||| |||||||||    
11870563 tttttattcttatcctacttgtattgaacatttgttggttaataata 11870609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 54 - 196
Target Start/End: Complemental strand, 40588718 - 40588576
Alignment:
54 ctttacattccaacttcgaggtaaagtttattaggcgaaaaatgaacatgattactcataccttagctcagacgacatgttcttatgctagtcaccatat 153  Q
    |||||||||||||||||||||| |||||| ||||| || ||  |||||||||| | ||||| ||||||  | || | |||||||  |||||||||| |||    
40588718 ctttacattccaacttcgaggtgaagtttgttaggagacaagcgaacatgattgcacatactttagctagggcggcctgttcttgggctagtcaccgtat 40588619  T
154 ttttgagatttctccgatttgtattgaacatttgttgattaat 196  Q
    |||| |  ||| |||   |||||||||||||| ||||||||||    
40588618 tttttatttttatccttcttgtattgaacattagttgattaat 40588576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 54 - 196
Target Start/End: Complemental strand, 478044 - 477902
Alignment:
54 ctttacattccaacttcgaggtaaagtttattaggcgaaaaatgaacatgattactcataccttagctcagacgacatgttcttatgctagtcaccatat 153  Q
    ||||||||||||||||| |||| |||||| ||||| || ||  ||||||| || ||||||||||||||  | || | |||||||  |||| ||||| |||    
478044 ctttacattccaacttcaaggtgaagtttgttaggagacaagcgaacatggttgctcataccttagctagggcgtcctgttcttgggctaatcaccgtat 477945  T
154 ttttgagatttctccgatttgtattgaacatttgttgattaat 196  Q
    |||| |   || |||   |||||||||||||| ||||||||||    
477944 tttttattcttatccttcttgtattgaacattggttgattaat 477902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 40 - 196
Target Start/End: Original strand, 13415208 - 13415364
Alignment:
40 tatttataaagtagctttacattccaacttcgaggtaaagtttattaggcgaaaaatgaacatgattactcataccttagctcagacgacatgttcttat 139  Q
    ||||||| || || ||||||||||||||||| |||| ||||||  |||| || ||  ||||||| || ||||||| ||||||  | ||   |||||||      
13415208 tatttatcaattatctttacattccaacttcaaggtgaagtttgctaggagacaagcgaacatggttgctcatactttagctagggcggtctgttcttgg 13415307  T
140 gctagtcaccatatttttgagatttctccgatttgtattgaacatttgttgattaat 196  Q
    |||||||||| ||||||| |  ||| |||   |||||||||||||| ||||||||||    
13415308 gctagtcaccgtattttttatttttatccttcttgtattgaacattggttgattaat 13415364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 2 - 40
Target Start/End: Complemental strand, 43924526 - 43924488
Alignment:
2 tgggaaacaagttccctttcccaaattaaatggcaccgt 40  Q
    |||||||||| ||||||||||||||||||||| ||||||    
43924526 tgggaaacaacttccctttcccaaattaaatgccaccgt 43924488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 51 - 204
Target Start/End: Original strand, 53661213 - 53661369
Alignment:
51 tagctttacattccaacttcgaggtaaagtttattaggcgaaaaatgaacatgattactcataccttagctcagacgacatgttcttatgctagtcacca 150  Q
    |||||||||||| |||||||||||||||  ||||||| ||| ||| |||||||| |||||||| ||| || | | || |||||||||  | |||||||||    
53661213 tagctttacatttcaacttcgaggtaaaaattattagacgataaacgaacatgactactcata-ctttgcacgggcggcatgttcttgggttagtcacca 53661311  T
151 ta----tttttgagatttctccgatttgtattgaacatttgttgattaataatatcag 204  Q
    ||    ||||| ||||||  || | |||||||||| ||||||| |||||| |||||||    
53661312 tattttttttttagatttagcctacttgtattgaatatttgtttattaatgatatcag 53661369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 54 - 196
Target Start/End: Complemental strand, 51734960 - 51734818
Alignment:
54 ctttacattccaacttcgaggtaaagtttattaggcgaaaaatgaacatgattactcataccttagctcagacgacatgttcttatgctagtcaccatat 153  Q
    |||||||||||||||||||||| |||||| ||||| || || |||||||| || ||||||| ||||||  | || | |||||||  |||| | ||| |||    
51734960 ctttacattccaacttcgaggtgaagtttgttaggtgacaagtgaacatggttgctcatactttagctagggcggcctgttcttgggctaattaccgtat 51734861  T
154 ttttgagatttctccgatttgtattgaacatttgttgattaat 196  Q
     |||||   || |||  ||||||||||||||| ||||||||||    
51734860 ctttgattcttatcctttttgtattgaacattggttgattaat 51734818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 54 - 113
Target Start/End: Original strand, 23095413 - 23095472
Alignment:
54 ctttacattccaacttcgaggtaaagtttattaggcgaaaaatgaacatgattactcata 113  Q
    |||||||||||||||||||||| |||||| ||||| || ||  |||||||||||||||||    
23095413 ctttacattccaacttcgaggtgaagtttgttaggagacaagcgaacatgattactcata 23095472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 51 - 196
Target Start/End: Original strand, 21321726 - 21321871
Alignment:
51 tagctttacattccaacttcgaggtaaagtttattaggcgaaaaatgaacatgattactcataccttagctcagacgacatgttcttatgctagtcacca 150  Q
    |||||||||||||||||||| |||| |||||||||| | || ||  || |||| || ||||||| ||||||  | || | |||||||  ||||||||||     
21321726 tagctttacattccaacttcaaggtgaagtttattaagagacaagcgatcatggttgctcatactttagctagggcggcctgttcttgggctagtcaccg 21321825  T
151 tatttttgagatttctccgatttgtattgaacatttgttgattaat 196  Q
    ||||||| |   || |||   |||||||||||||| ||||||||||    
21321826 tattttttattcttatccttcttgtattgaacattggttgattaat 21321871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 54 - 121
Target Start/End: Complemental strand, 32577036 - 32576969
Alignment:
54 ctttacattccaacttcgaggtaaagtttattaggcgaaaaatgaacatgattactcataccttagct 121  Q
    |||||||||||||||||||||| |||||| ||||| || ||  ||||||| || ||||||| ||||||    
32577036 ctttacattccaacttcgaggtgaagtttgttaggagacaagcgaacatggttgctcatactttagct 32576969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 54 - 121
Target Start/End: Complemental strand, 37245840 - 37245773
Alignment:
54 ctttacattccaacttcgaggtaaagtttattaggcgaaaaatgaacatgattactcataccttagct 121  Q
    |||||||||||||||||||||| |||||| ||||| || ||  ||||||| || ||||||| ||||||    
37245840 ctttacattccaacttcgaggtgaagtttgttaggagacaatcgaacatggttgctcatactttagct 37245773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 54 - 157
Target Start/End: Complemental strand, 44936070 - 44935967
Alignment:
54 ctttacattccaacttcgaggtaaagtttattaggcgaaaaatgaacatgattactcataccttagctcagacgacatgttcttatgctagtcaccatat 153  Q
    |||||||||||||||||||||| |||||| ||||  || ||  ||||||| || ||||||  ||||||  |||| |||||||||  | |||||||| |||    
44936070 ctttacattccaacttcgaggtgaagtttgttagcagacaagcgaacatggttgctcatagtttagctatgacggcatgttcttgggttagtcaccgtat 44935971  T
154 tttt 157  Q
    ||||    
44935970 tttt 44935967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 54 - 121
Target Start/End: Original strand, 49951512 - 49951579
Alignment:
54 ctttacattccaacttcgaggtaaagtttattaggcgaaaaatgaacatgattactcataccttagct 121  Q
    |||||||||||||||||||||| |||||| ||||| || ||  ||||||| || ||||||| ||||||    
49951512 ctttacattccaacttcgaggtgaagtttgttaggagacaagcgaacatggttgctcatactttagct 49951579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 54 - 121
Target Start/End: Complemental strand, 51259517 - 51259450
Alignment:
54 ctttacattccaacttcgaggtaaagtttattaggcgaaaaatgaacatgattactcataccttagct 121  Q
    |||||||||||||||||||||| |||||| ||||| || ||  ||||||| || |||||| |||||||    
51259517 ctttacattccaacttcgaggtgaagtttgttaggagacaagcgaacatggttgctcatagcttagct 51259450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 2 - 38
Target Start/End: Original strand, 47377610 - 47377646
Alignment:
2 tgggaaacaagttccctttcccaaattaaatggcacc 38  Q
    |||||||||| | ||||||||||||||||||||||||    
47377610 tgggaaacaactcccctttcccaaattaaatggcacc 47377646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 54 - 196
Target Start/End: Complemental strand, 9328590 - 9328448
Alignment:
54 ctttacattccaacttcgaggtaaagtttattaggcgaaaaatgaacatgattactcataccttagctcagacgacatgttcttatgctagtcaccatat 153  Q
    ||||||||||||||||||| || |||||| ||||| || ||  ||||||| || ||||||| ||||||  |||| | | |||||  |||||||||| |||    
9328590 ctttacattccaacttcgatgtgaagtttgttaggagacaagcgaacatggttgctcatactttagctacgacgtcctattcttgggctagtcaccgtat 9328491  T
154 ttttgagatttctccgatttgtattgaacatttgttgattaat 196  Q
    |||| |  ||| |||   |||||||||||||| ||||||||||    
9328490 ttttaatttttatccttcttgtattgaacattggttgattaat 9328448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 54 - 196
Target Start/End: Original strand, 16732132 - 16732274
Alignment:
54 ctttacattccaacttcgaggtaaagtttattaggcgaaaaatgaacatgattactcataccttagctcagacgacatgttcttatgctagtcaccatat 153  Q
    |||||||||||||||||||||| |||||| ||||| || ||  ||||||| || ||||||| ||||||  | ||   |||||||  |||||||||| |||    
16732132 ctttacattccaacttcgaggtgaagtttgttaggagacaagcgaacatggttgctcatactttagctagggcggactgttcttgggctagtcaccgtat 16732231  T
154 ttttgagatttctccgatttgtattgaacatttgttgattaat 196  Q
    |||| |   || |||  ||||||||||||||| ||||||||||    
16732232 tttttattcttatcctttttgtattgaacattggttgattaat 16732274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 54 - 196
Target Start/End: Original strand, 17710266 - 17710408
Alignment:
54 ctttacattccaacttcgaggtaaagtttattaggcgaaaaatgaacatgattactcataccttagctcagacgacatgttcttatgctagtcaccatat 153  Q
    |||||||||||||||||||||| |||||| ||||| || ||  ||||||| || ||||||| ||||||  | ||   |||||||  |||||||||| |||    
17710266 ctttacattccaacttcgaggtgaagtttgttaggagacaagcgaacatggttgctcatactttagctagggcggactgttcttgggctagtcaccgtat 17710365  T
154 ttttgagatttctccgatttgtattgaacatttgttgattaat 196  Q
    |||| |   || |||  ||||||||||||||| ||||||||||    
17710366 tttttattcttatcctttttgtattgaacattggttgattaat 17710408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 54 - 196
Target Start/End: Original strand, 24251638 - 24251777
Alignment:
54 ctttacattccaacttcgaggtaaagtttattaggcgaaaaatgaacatgattactcataccttagctcagacgacatgttcttatgctagtcaccatat 153  Q
    |||||||||||||||||||||| |||||| ||||| || ||  ||||||| || ||||||| ||||||  | || | |||||||  |||||||||| |||    
24251638 ctttacattccaacttcgaggtgaagtttgttaggagacaagcgaacatggttgctcatactttagctagggcggcctgttcttgagctagtcaccgtat 24251737  T
154 ttttgagatttctccgatttgtattgaacatttgttgattaat 196  Q
    |||| |   || |||   |||||||||||||| ||||||||||    
24251738 ttttaattcttatcc---ttgtattgaacattggttgattaat 24251777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 54 - 121
Target Start/End: Complemental strand, 29200943 - 29200876
Alignment:
54 ctttacattccaacttcgaggtaaagtttattaggcgaaaaatgaacatgattactcataccttagct 121  Q
    |||||||||||||||||||||| |||||| ||||| || ||| ||||||| || ||||||| ||||||    
29200943 ctttacattccaacttcgaggtgaagtttgttaggagacaaacgaacatggttgctcatactttagct 29200876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 54 - 157
Target Start/End: Original strand, 44481286 - 44481389
Alignment:
54 ctttacattccaacttcgaggtaaagtttattaggcgaaaaatgaacatgattactcataccttagctcagacgacatgttcttatgctagtcaccatat 153  Q
    ||||||||| |||||||||||| |||||| ||||| || ||  ||||||| || ||||||| ||||||  | || | |||||||  ||||||||||||||    
44481286 ctttacatttcaacttcgaggtgaagtttgttaggagacaagcgaacatggttgctcatactttagctagggcggcctgttcttgggctagtcaccatat 44481385  T
154 tttt 157  Q
    ||||    
44481386 tttt 44481389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 57 - 91
Target Start/End: Complemental strand, 43783022 - 43782988
Alignment:
57 tacattccaacttcgaggtaaagtttattaggcga 91  Q
    ||||||||||||||||||||||||||||| |||||    
43783022 tacattccaacttcgaggtaaagtttattcggcga 43782988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 140 - 201
Target Start/End: Original strand, 6216578 - 6216639
Alignment:
140 gctagtcaccatatttttgagatttctccgatttgtattgaacatttgttgattaataatat 201  Q
    |||| ||||||| |||| |||||||||||  ||||||||||||||||  | |||||||||||    
6216578 gctaatcaccatgttttcgagatttctcctttttgtattgaacatttccttattaataatat 6216639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 54 - 159
Target Start/End: Complemental strand, 33224548 - 33224443
Alignment:
54 ctttacattccaacttcgaggtaaagtttattaggcgaaaaatgaacatgattactcataccttagctcagacgacatgttcttatgctagtcaccatat 153  Q
    ||||||||||||||||| |||| |||||| ||||| || ||  |||||||||| |||||| |||| ||  | |  | |||||||  |||||||||| |||    
33224548 ctttacattccaacttcaaggtgaagtttgttaggagacaagcgaacatgattgctcataacttatctagggcagcctgttcttgggctagtcaccgtat 33224449  T
154 ttttga 159  Q
    ||||||    
33224448 ttttga 33224443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 51 - 120
Target Start/End: Complemental strand, 10244561 - 10244492
Alignment:
51 tagctttacattccaacttcgaggtaaagtttattaggcgaaaaatgaacatgattactcataccttagc 120  Q
    |||||||| |||||||||||||||| |||||||||| |||  || ||||||||||| ||||||| |||||    
10244561 tagctttagattccaacttcgaggtgaagtttattaagcggcaagtgaacatgattgctcatactttagc 10244492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 54 - 157
Target Start/End: Original strand, 9710154 - 9710257
Alignment:
54 ctttacattccaacttcgaggtaaagtttattaggcgaaaaatgaacatgattactcataccttagctcagacgacatgttcttatgctagtcaccatat 153  Q
    |||||||||||||||||||||| |||||| ||||| || ||  ||||||| || ||||||| |||||| |||||   |||||||  |||||| ||| |||    
9710154 ctttacattccaacttcgaggtgaagtttgttaggagacaagcgaacatggttgctcatactttagctaagacggtctgttcttgggctagtaaccgtat 9710253  T
154 tttt 157  Q
    ||||    
9710254 tttt 9710257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 30545446 - 30545483
Alignment:
1 atgggaaacaagttccctttcccaaattaaatggcacc 38  Q
    ||||||||||| ||||||||||||||||||||||||||    
30545446 atgggaaacaacttccctttcccaaattaaatggcacc 30545483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 44154313 - 44154276
Alignment:
1 atgggaaacaagttccctttcccaaattaaatggcacc 38  Q
    ||||||||||| ||||||||||||||||||||||||||    
44154313 atgggaaacaacttccctttcccaaattaaatggcacc 44154276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 54 - 121
Target Start/End: Complemental strand, 34695892 - 34695825
Alignment:
54 ctttacattccaacttcgaggtaaagtttattaggcgaaaaatgaacatgattactcataccttagct 121  Q
    |||||||||||||||||||||| |||||| ||||| || ||  ||||||| || ||||||| ||||||    
34695892 ctttacattccaacttcgaggtgaagtttgttaggagacaagcgaacatggttgctcatactttagct 34695825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 54 - 121
Target Start/End: Complemental strand, 34718304 - 34718237
Alignment:
54 ctttacattccaacttcgaggtaaagtttattaggcgaaaaatgaacatgattactcataccttagct 121  Q
    |||||||||||||||||||||| |||||| ||||| || ||  ||||||| || ||||||| ||||||    
34718304 ctttacattccaacttcgaggtgaagtttgttaggagacaagcgaacatggttgctcatactttagct 34718237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 51 - 157
Target Start/End: Original strand, 88755 - 88861
Alignment:
51 tagctttacattccaacttcgaggtaaagtttattaggcgaaaaatgaacatgattactcataccttagctcagacgacatgttcttatgctagtcacca 150  Q
    |||||||||||||||||||| | || ||||||||| || || ||  ||||||| || ||||||| ||||||  | || | |||||||  ||||||||||     
88755 tagctttacattccaacttcaacgtgaagtttatttggagacaagcgaacatggttgctcatactttagctagggcggcctgttcttgggctagtcaccg 88854  T
151 tattttt 157  Q
    |||||||    
88855 tattttt 88861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 30544764 - 30544727
Alignment:
1 atgggaaacaagttccctttcccaaattaaatggcacc 38  Q
    ||||||||||| |||| |||||||||||||||||||||    
30544764 atgggaaacaacttccatttcccaaattaaatggcacc 30544727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 44154993 - 44155030
Alignment:
1 atgggaaacaagttccctttcccaaattaaatggcacc 38  Q
    ||||||||||| |||||||||||||||||||| |||||    
44154993 atgggaaacaacttccctttcccaaattaaatagcacc 44155030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 40 - 88
Target Start/End: Complemental strand, 1417983 - 1417935
Alignment:
40 tatttataaagtagctttacattccaacttcgaggtaaagtttattagg 88  Q
    ||||||| || || |||||||||||||||||||||| |||||| |||||    
1417983 tatttatcaattatctttacattccaacttcgaggtgaagtttgttagg 1417935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 54 - 86
Target Start/End: Complemental strand, 36445507 - 36445475
Alignment:
54 ctttacattccaacttcgaggtaaagtttatta 86  Q
    |||||||||||||||||||||| ||||||||||    
36445507 ctttacattccaacttcgaggtgaagtttatta 36445475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 54 - 157
Target Start/End: Complemental strand, 34497360 - 34497257
Alignment:
54 ctttacattccaacttcgaggtaaagtttattaggcgaaaaatgaacatgattactcataccttagctcagacgacatgttcttatgctagtcaccatat 153  Q
    |||||||||||||||||||||| |||||| ||||| || ||  ||||||| || |||||| |||||||  | || | |||||||  |||||||||| |||    
34497360 ctttacattccaacttcgaggtgaagtttgttaggagacaagcgaacatggttgctcatagcttagctagggcggcctgttcttgggctagtcaccgtat 34497261  T
154 tttt 157  Q
    ||||    
34497260 tttt 34497257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 54 - 157
Target Start/End: Original strand, 55199710 - 55199813
Alignment:
54 ctttacattccaacttcgaggtaaagtttattaggcgaaaaatgaacatgattactcataccttagctcagacgacatgttcttatgctagtcaccatat 153  Q
    |||||||||||||||||||||| |||||| ||||| || ||  ||||||| || |||||| |||||||  | || | |||||||  |||||| |||||||    
55199710 ctttacattccaacttcgaggtgaagtttgttaggagacaagcgaacatggttgctcatagcttagctacggcggcctgttcttgcgctagtgaccatat 55199809  T
154 tttt 157  Q
    ||||    
55199810 tttt 55199813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 54 - 200
Target Start/End: Complemental strand, 647158 - 647012
Alignment:
54 ctttacattccaacttcgaggtaaagtttattaggcgaaaaatgaacatgattactcataccttagctcagacgacatgttcttatgctagtcaccatat 153  Q
    |||||||||||||||||||||| || ||| ||||| || ||| ||||||| || ||||||| |||| |  | || | |||||||   ||| ||||| |||    
647158 ctttacattccaacttcgaggtgaaatttgttaggagacaaacgaacatggttgctcatactttagttagggcggcctgttcttggactaatcaccgtat 647059  T
154 ttttgagatttctccgatttgtattgaacatttgttgattaataata 200  Q
    ||||||  ||| ||    |||||||||||||| ||||||||||||||    
647058 ttttgaattttatctttcttgtattgaacattggttgattaataata 647012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 54 - 119
Target Start/End: Complemental strand, 31341713 - 31341648
Alignment:
54 ctttacattccaacttcgaggtaaagtttattaggcgaaaaatgaacatgattactcataccttag 119  Q
    ||||||||||||||||| |||| |||||||||||| || |||   ||||| || ||||||||||||    
31341713 ctttacattccaacttcaaggtgaagtttattaggagacaaactgacatggttgctcataccttag 31341648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 54 - 157
Target Start/End: Complemental strand, 27608891 - 27608788
Alignment:
54 ctttacattccaacttcgaggtaaagtttattaggcgaaaaatgaacatgattactcataccttagctcaga-cgacatgttcttatgctagtcaccata 152  Q
    |||||||||||||||||||| | |||||| ||||| || ||  ||||||| || |||||| ||||||| ||| || | |||||||  |||||||||| ||    
27608891 ctttacattccaacttcgagctgaagtttgttaggagacaagcgaacatggttgctcatagcttagct-agagcggcctgttcttgggctagtcaccgta 27608793  T
153 ttttt 157  Q
    |||||    
27608792 ttttt 27608788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 54 - 157
Target Start/End: Complemental strand, 34104453 - 34104350
Alignment:
54 ctttacattccaacttcgaggtaaagtttattaggcgaaaaatgaacatgattactcataccttagctcagacgacatgttcttatgctagtcaccatat 153  Q
    |||||||||| ||||||||||| |||||| ||||| || ||   |||||| || |||||| |||||||  | || |||||||||  |||||||||| |||    
34104453 ctttacattcgaacttcgaggtgaagtttgttaggagacaagcaaacatggttgctcatagcttagctatggcggcatgttcttgggctagtcaccgtat 34104354  T
154 tttt 157  Q
    ||||    
34104353 tttt 34104350  T

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Target: scaffold0922 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0922
Description:

Target: scaffold0922; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 56 - 157
Target Start/End: Complemental strand, 250 - 149
Alignment:
56 ttacattccaacttcgaggtaaagtttattaggcgaaaaatgaacatgattactcataccttagctcagacgacatgttcttatgctagtcaccatattt 155  Q
    ||||||||||||||||| || |||||| ||||| || ||  ||||| | || ||||||| ||| ||  |||||| |||||||  |||||||||| |||||    
250 ttacattccaacttcgatgtgaagtttgttaggagacaagcgaacacggttgctcatactttaactaggacgacttgttcttgggctagtcaccgtattt 151  T
156 tt 157  Q
    ||    
150 tt 149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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