View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17287_low_34 (Length: 377)
Name: NF17287_low_34
Description: NF17287
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17287_low_34 |
 |  |
|
| [»] scaffold0922 (1 HSPs) |
 |  |  |
|
Alignment Details
Target: chr1 (Bit Score: 232; Significance: 1e-128; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 40 - 361
Target Start/End: Complemental strand, 38679098 - 38678781
Alignment:
| Q |
40 |
tatttataaagtagctttacattccaacttcgaggtaaagtttattaggcgaaaaatgaacatgattactcataccttagctcagacgacatgttcttat |
139 |
Q |
| |
|
||||||||| ||||||||||||||||||||| |||| ||||||||||||||||||||||| ||||||||||||||||||||| ||||||||| ||||||| |
|
|
| T |
38679098 |
tatttataaggtagctttacattccaacttcaaggtgaagtttattaggcgaaaaatgaatatgattactcataccttagctaagacgacatattcttat |
38678999 |
T |
 |
| Q |
140 |
gctagtcaccatatttttgagatttctccgatttgtattgaacatttgttgattaataatatcaggaaagtttatcaagccaatagtaattactccatct |
239 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
38678998 |
gctagtcaccatattttttagatttctccgatttgtattgaacatttgttgattaataatatcagtaaagtttatcaagccaatagtaattactccatct |
38678899 |
T |
 |
| Q |
240 |
atcccacaccatatgacattttaacnnnnnnnttgttgtattttataggtcgttttacaatatcatcaatacaattttaatgtttgtcttcttccaaaaa |
339 |
Q |
| |
|
|||||| |||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||| ||||||||| |||||||||||||| |
|
|
| T |
38678898 |
atcccagaccatatgacattttaacaaacaaattgttgtattttataggtcgttttacaatatc----atacaatcttaatgtttatcttcttccaaaaa |
38678803 |
T |
 |
| Q |
340 |
catttggatgacatagtaaaag |
361 |
Q |
| |
|
|||||||||| |||||||||| |
|
|
| T |
38678802 |
tatttggatgagatagtaaaag |
38678781 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 51 - 160
Target Start/End: Original strand, 17371644 - 17371753
Alignment:
| Q |
51 |
tagctttacattccaacttcgaggtaaagtttattaggcgaaaaatgaacatgattactcataccttagctcagacgacatgttcttatgctagtcacca |
150 |
Q |
| |
|
|||||||||||||||||||| |||| |||||||||||| || || ||| ||| | |||||||||||||| | || ||||||||| |||||||||| |
|
|
| T |
17371644 |
tagctttacattccaacttcaaggtgaagtttattaggagacaagcgaatatggtcgctcataccttagctagggcggcatgttcttgagctagtcaccg |
17371743 |
T |
 |
| Q |
151 |
tatttttgag |
160 |
Q |
| |
|
|||||||||| |
|
|
| T |
17371744 |
tatttttgag |
17371753 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 54 - 196
Target Start/End: Original strand, 5609538 - 5609680
Alignment:
| Q |
54 |
ctttacattccaacttcgaggtaaagtttattaggcgaaaaatgaacatgattactcataccttagctcagacgacatgttcttatgctagtcaccatat |
153 |
Q |
| |
|
|||||||||||||||||||||| |||||| ||||| || || ||||||| || ||||||| |||||| | || ||||||||| ||||||||| ||| |
|
|
| T |
5609538 |
ctttacattccaacttcgaggtgaagtttgttaggagacaagcgaacatggttgctcatacattagctagggcggcatgttcttgggctagtcactgtat |
5609637 |
T |
 |
| Q |
154 |
ttttgagatttctccgatttgtattgaacatttgttgattaat |
196 |
Q |
| |
|
|||| | || ||| |||||||||||||| |||||||||| |
|
|
| T |
5609638 |
tttttattcttatccttcttgtattgaacattggttgattaat |
5609680 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 54 - 121
Target Start/End: Complemental strand, 48949712 - 48949645
Alignment:
| Q |
54 |
ctttacattccaacttcgaggtaaagtttattaggcgaaaaatgaacatgattactcataccttagct |
121 |
Q |
| |
|
|||||||||||||||||||||| |||||| ||||| || || ||||||| ||||||||| ||||||| |
|
|
| T |
48949712 |
ctttacattccaacttcgaggtgaagtttgttaggagacaagcgaacatggttactcatagcttagct |
48949645 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 54 - 157
Target Start/End: Original strand, 24538686 - 24538789
Alignment:
| Q |
54 |
ctttacattccaacttcgaggtaaagtttattaggcgaaaaatgaacatgattactcataccttagctcagacgacatgttcttatgctagtcaccatat |
153 |
Q |
| |
|
|||||||||| ||||| ||||| ||||| ||||| | || |||||||||| ||||||| || ||| ||| |||||||||| |||||||||||||| |
|
|
| T |
24538686 |
ctttacattctaactttgaggtgaagttcgttaggaaacaagcgaacatgattgctcatacttttgctaggacaacatgttcttcggctagtcaccatat |
24538785 |
T |
 |
| Q |
154 |
tttt |
157 |
Q |
| |
|
|||| |
|
|
| T |
24538786 |
tttt |
24538789 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 58 - 157
Target Start/End: Original strand, 51113518 - 51113617
Alignment:
| Q |
58 |
acattccaacttcgaggtaaagtttattaggcgaaaaatgaacatgattactcataccttagctcagacgacatgttcttatgctagtcaccatattttt |
157 |
Q |
| |
|
|||||||||||||||||| |||||| ||||| || || ||||||| || |||||| ||||||| | |||| ||||||| | |||||||| ||||||| |
|
|
| T |
51113518 |
acattccaacttcgaggtgaagtttgttaggagagaagcgaacatggttgctcatagcttagctagggcgacctgttcttgggttagtcaccgtattttt |
51113617 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 48; Significance: 2e-18; HSPs: 8)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 54 - 157
Target Start/End: Complemental strand, 22767261 - 22767158
Alignment:
| Q |
54 |
ctttacattccaacttcgaggtaaagtttattaggcgaaaaatgaacatgattactcataccttagctcagacgacatgttcttatgctagtcaccatat |
153 |
Q |
| |
|
|||||||||||||||||||||| |||||| ||||| || ||| ||||||| || ||||||| |||||| || || ||||||||| |||||||||| ||| |
|
|
| T |
22767261 |
ctttacattccaacttcgaggtgaagtttgttaggagacaaacgaacatggttgctcatactttagctaaggcggcatgttcttgggctagtcaccgtat |
22767162 |
T |
 |
| Q |
154 |
tttt |
157 |
Q |
| |
|
|||| |
|
|
| T |
22767161 |
tttt |
22767158 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 54 - 157
Target Start/End: Original strand, 4268298 - 4268401
Alignment:
| Q |
54 |
ctttacattccaacttcgaggtaaagtttattaggcgaaaaatgaacatgattactcataccttagctcagacgacatgttcttatgctagtcaccatat |
153 |
Q |
| |
|
||||||||||||||||| |||| |||||||||||| || || ||||||| || ||||||| ||| || | || ||||||||| |||||||||| ||| |
|
|
| T |
4268298 |
ctttacattccaacttcaaggtgaagtttattaggagacaagcgaacatggttgctcatactttatctagggcggcatgttcttgggctagtcaccgtat |
4268397 |
T |
 |
| Q |
154 |
tttt |
157 |
Q |
| |
|
|||| |
|
|
| T |
4268398 |
tttt |
4268401 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 55 - 157
Target Start/End: Original strand, 23075032 - 23075134
Alignment:
| Q |
55 |
tttacattccaacttcgaggtaaagtttattaggcgaaaaatgaacatgattactcataccttagctcagacgacatgttcttatgctagtcaccatatt |
154 |
Q |
| |
|
||||||||||||||| |||| |||||| ||||| || || ||||||| || |||||| |||||| |||||||||||||| |||||||||| |||| |
|
|
| T |
23075032 |
tttacattccaactttaaggtgaagtttgttaggagacaagcgaacatggttgctcatagtttagctaggacgacatgttcttgggctagtcaccgtatt |
23075131 |
T |
 |
| Q |
155 |
ttt |
157 |
Q |
| |
|
||| |
|
|
| T |
23075132 |
ttt |
23075134 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 141 - 201
Target Start/End: Original strand, 12779019 - 12779079
Alignment:
| Q |
141 |
ctagtcaccatatttttgagatttctccgatttgtattgaacatttgttgattaataatat |
201 |
Q |
| |
|
||||||||||| ||| |||||||||||| | ||||| |||||| || |||||||||||||| |
|
|
| T |
12779019 |
ctagtcaccatgtttgtgagatttctcctacttgtaatgaacaattattgattaataatat |
12779079 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 54 - 157
Target Start/End: Original strand, 27292633 - 27292735
Alignment:
| Q |
54 |
ctttacattccaacttcgaggtaaagtttattaggcgaaaaatgaacatgattactcataccttagctcagacgacatgttcttatgctagtcaccatat |
153 |
Q |
| |
|
||||||||||||||||| | || |||||||| ||| || || ||||||| || ||||||| |||||| || ||||||||||| |||||||||| ||| |
|
|
| T |
27292633 |
ctttacattccaacttcaaagtgaagtttatcaggagacaagcgaacatggttgctcatactttagct-aggggacatgttcttgggctagtcaccgtat |
27292731 |
T |
 |
| Q |
154 |
tttt |
157 |
Q |
| |
|
|||| |
|
|
| T |
27292732 |
tttt |
27292735 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 54 - 137
Target Start/End: Complemental strand, 27532894 - 27532811
Alignment:
| Q |
54 |
ctttacattccaacttcgaggtaaagtttattaggcgaaaaatgaacatgattactcataccttagctcagacgacatgttctt |
137 |
Q |
| |
|
|||||||||||||||||||||| |||||| ||||| || || ||||||| ||||| |||| |||||| | ||||||||||| |
|
|
| T |
27532894 |
ctttacattccaacttcgaggtgaagtttgttaggagacaagcgaacatggttacttatactttagctagggtgacatgttctt |
27532811 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 54 - 121
Target Start/End: Complemental strand, 41940725 - 41940658
Alignment:
| Q |
54 |
ctttacattccaacttcgaggtaaagtttattaggcgaaaaatgaacatgattactcataccttagct |
121 |
Q |
| |
|
|||||||||||||||||||||| |||||| ||||| || || |||||||||| || |||| |||||| |
|
|
| T |
41940725 |
ctttacattccaacttcgaggtgaagtttgttaggagacaagagaacatgattgctaatactttagct |
41940658 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 141 - 201
Target Start/End: Original strand, 12717795 - 12717855
Alignment:
| Q |
141 |
ctagtcaccatatttttgagatttctccgatttgtattgaacatttgttgattaataatat |
201 |
Q |
| |
|
||||||||||| ||| |||||||||||| | ||||| |||||| || ||||||||| |||| |
|
|
| T |
12717795 |
ctagtcaccatgtttgtgagatttctcctacttgtaatgaacaattattgattaatgatat |
12717855 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 54 - 200
Target Start/End: Original strand, 11870463 - 11870609
Alignment:
| Q |
54 |
ctttacattccaacttcgaggtaaagtttattaggcgaaaaatgaacatgattactcataccttagctcagacgacatgttcttatgctagtcaccatat |
153 |
Q |
| |
|
|||||||||| ||||||||||| |||||| ||||| || || ||||||| || ||||||| |||||| | | || ||||||| |||| ||||||||| |
|
|
| T |
11870463 |
ctttacattctaacttcgaggtgaagtttgttaggagacaagcgaacatggttgctcatactttagctagggcaacctgttcttgggctaatcaccatat |
11870562 |
T |
 |
| Q |
154 |
ttttgagatttctccgatttgtattgaacatttgttgattaataata |
200 |
Q |
| |
|
|||| | || ||| | ||||||||||||||||||| ||||||||| |
|
|
| T |
11870563 |
tttttattcttatcctacttgtattgaacatttgttggttaataata |
11870609 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 54 - 196
Target Start/End: Complemental strand, 40588718 - 40588576
Alignment:
| Q |
54 |
ctttacattccaacttcgaggtaaagtttattaggcgaaaaatgaacatgattactcataccttagctcagacgacatgttcttatgctagtcaccatat |
153 |
Q |
| |
|
|||||||||||||||||||||| |||||| ||||| || || |||||||||| | ||||| |||||| | || | ||||||| |||||||||| ||| |
|
|
| T |
40588718 |
ctttacattccaacttcgaggtgaagtttgttaggagacaagcgaacatgattgcacatactttagctagggcggcctgttcttgggctagtcaccgtat |
40588619 |
T |
 |
| Q |
154 |
ttttgagatttctccgatttgtattgaacatttgttgattaat |
196 |
Q |
| |
|
|||| | ||| ||| |||||||||||||| |||||||||| |
|
|
| T |
40588618 |
tttttatttttatccttcttgtattgaacattagttgattaat |
40588576 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 54 - 196
Target Start/End: Complemental strand, 478044 - 477902
Alignment:
| Q |
54 |
ctttacattccaacttcgaggtaaagtttattaggcgaaaaatgaacatgattactcataccttagctcagacgacatgttcttatgctagtcaccatat |
153 |
Q |
| |
|
||||||||||||||||| |||| |||||| ||||| || || ||||||| || |||||||||||||| | || | ||||||| |||| ||||| ||| |
|
|
| T |
478044 |
ctttacattccaacttcaaggtgaagtttgttaggagacaagcgaacatggttgctcataccttagctagggcgtcctgttcttgggctaatcaccgtat |
477945 |
T |
 |
| Q |
154 |
ttttgagatttctccgatttgtattgaacatttgttgattaat |
196 |
Q |
| |
|
|||| | || ||| |||||||||||||| |||||||||| |
|
|
| T |
477944 |
tttttattcttatccttcttgtattgaacattggttgattaat |
477902 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 40 - 196
Target Start/End: Original strand, 13415208 - 13415364
Alignment:
| Q |
40 |
tatttataaagtagctttacattccaacttcgaggtaaagtttattaggcgaaaaatgaacatgattactcataccttagctcagacgacatgttcttat |
139 |
Q |
| |
|
||||||| || || ||||||||||||||||| |||| |||||| |||| || || ||||||| || ||||||| |||||| | || ||||||| |
|
|
| T |
13415208 |
tatttatcaattatctttacattccaacttcaaggtgaagtttgctaggagacaagcgaacatggttgctcatactttagctagggcggtctgttcttgg |
13415307 |
T |
 |
| Q |
140 |
gctagtcaccatatttttgagatttctccgatttgtattgaacatttgttgattaat |
196 |
Q |
| |
|
|||||||||| ||||||| | ||| ||| |||||||||||||| |||||||||| |
|
|
| T |
13415308 |
gctagtcaccgtattttttatttttatccttcttgtattgaacattggttgattaat |
13415364 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 2 - 40
Target Start/End: Complemental strand, 43924526 - 43924488
Alignment:
| Q |
2 |
tgggaaacaagttccctttcccaaattaaatggcaccgt |
40 |
Q |
| |
|
|||||||||| ||||||||||||||||||||| |||||| |
|
|
| T |
43924526 |
tgggaaacaacttccctttcccaaattaaatgccaccgt |
43924488 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 10)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 51 - 204
Target Start/End: Original strand, 53661213 - 53661369
Alignment:
| Q |
51 |
tagctttacattccaacttcgaggtaaagtttattaggcgaaaaatgaacatgattactcataccttagctcagacgacatgttcttatgctagtcacca |
150 |
Q |
| |
|
|||||||||||| ||||||||||||||| ||||||| ||| ||| |||||||| |||||||| ||| || | | || ||||||||| | ||||||||| |
|
|
| T |
53661213 |
tagctttacatttcaacttcgaggtaaaaattattagacgataaacgaacatgactactcata-ctttgcacgggcggcatgttcttgggttagtcacca |
53661311 |
T |
 |
| Q |
151 |
ta----tttttgagatttctccgatttgtattgaacatttgttgattaataatatcag |
204 |
Q |
| |
|
|| ||||| |||||| || | |||||||||| ||||||| |||||| ||||||| |
|
|
| T |
53661312 |
tattttttttttagatttagcctacttgtattgaatatttgtttattaatgatatcag |
53661369 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 54 - 196
Target Start/End: Complemental strand, 51734960 - 51734818
Alignment:
| Q |
54 |
ctttacattccaacttcgaggtaaagtttattaggcgaaaaatgaacatgattactcataccttagctcagacgacatgttcttatgctagtcaccatat |
153 |
Q |
| |
|
|||||||||||||||||||||| |||||| ||||| || || |||||||| || ||||||| |||||| | || | ||||||| |||| | ||| ||| |
|
|
| T |
51734960 |
ctttacattccaacttcgaggtgaagtttgttaggtgacaagtgaacatggttgctcatactttagctagggcggcctgttcttgggctaattaccgtat |
51734861 |
T |
 |
| Q |
154 |
ttttgagatttctccgatttgtattgaacatttgttgattaat |
196 |
Q |
| |
|
||||| || ||| ||||||||||||||| |||||||||| |
|
|
| T |
51734860 |
ctttgattcttatcctttttgtattgaacattggttgattaat |
51734818 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 54 - 113
Target Start/End: Original strand, 23095413 - 23095472
Alignment:
| Q |
54 |
ctttacattccaacttcgaggtaaagtttattaggcgaaaaatgaacatgattactcata |
113 |
Q |
| |
|
|||||||||||||||||||||| |||||| ||||| || || ||||||||||||||||| |
|
|
| T |
23095413 |
ctttacattccaacttcgaggtgaagtttgttaggagacaagcgaacatgattactcata |
23095472 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 51 - 196
Target Start/End: Original strand, 21321726 - 21321871
Alignment:
| Q |
51 |
tagctttacattccaacttcgaggtaaagtttattaggcgaaaaatgaacatgattactcataccttagctcagacgacatgttcttatgctagtcacca |
150 |
Q |
| |
|
|||||||||||||||||||| |||| |||||||||| | || || || |||| || ||||||| |||||| | || | ||||||| |||||||||| |
|
|
| T |
21321726 |
tagctttacattccaacttcaaggtgaagtttattaagagacaagcgatcatggttgctcatactttagctagggcggcctgttcttgggctagtcaccg |
21321825 |
T |
 |
| Q |
151 |
tatttttgagatttctccgatttgtattgaacatttgttgattaat |
196 |
Q |
| |
|
||||||| | || ||| |||||||||||||| |||||||||| |
|
|
| T |
21321826 |
tattttttattcttatccttcttgtattgaacattggttgattaat |
21321871 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 54 - 121
Target Start/End: Complemental strand, 32577036 - 32576969
Alignment:
| Q |
54 |
ctttacattccaacttcgaggtaaagtttattaggcgaaaaatgaacatgattactcataccttagct |
121 |
Q |
| |
|
|||||||||||||||||||||| |||||| ||||| || || ||||||| || ||||||| |||||| |
|
|
| T |
32577036 |
ctttacattccaacttcgaggtgaagtttgttaggagacaagcgaacatggttgctcatactttagct |
32576969 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 54 - 121
Target Start/End: Complemental strand, 37245840 - 37245773
Alignment:
| Q |
54 |
ctttacattccaacttcgaggtaaagtttattaggcgaaaaatgaacatgattactcataccttagct |
121 |
Q |
| |
|
|||||||||||||||||||||| |||||| ||||| || || ||||||| || ||||||| |||||| |
|
|
| T |
37245840 |
ctttacattccaacttcgaggtgaagtttgttaggagacaatcgaacatggttgctcatactttagct |
37245773 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 54 - 157
Target Start/End: Complemental strand, 44936070 - 44935967
Alignment:
| Q |
54 |
ctttacattccaacttcgaggtaaagtttattaggcgaaaaatgaacatgattactcataccttagctcagacgacatgttcttatgctagtcaccatat |
153 |
Q |
| |
|
|||||||||||||||||||||| |||||| |||| || || ||||||| || |||||| |||||| |||| ||||||||| | |||||||| ||| |
|
|
| T |
44936070 |
ctttacattccaacttcgaggtgaagtttgttagcagacaagcgaacatggttgctcatagtttagctatgacggcatgttcttgggttagtcaccgtat |
44935971 |
T |
 |
| Q |
154 |
tttt |
157 |
Q |
| |
|
|||| |
|
|
| T |
44935970 |
tttt |
44935967 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 54 - 121
Target Start/End: Original strand, 49951512 - 49951579
Alignment:
| Q |
54 |
ctttacattccaacttcgaggtaaagtttattaggcgaaaaatgaacatgattactcataccttagct |
121 |
Q |
| |
|
|||||||||||||||||||||| |||||| ||||| || || ||||||| || ||||||| |||||| |
|
|
| T |
49951512 |
ctttacattccaacttcgaggtgaagtttgttaggagacaagcgaacatggttgctcatactttagct |
49951579 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 54 - 121
Target Start/End: Complemental strand, 51259517 - 51259450
Alignment:
| Q |
54 |
ctttacattccaacttcgaggtaaagtttattaggcgaaaaatgaacatgattactcataccttagct |
121 |
Q |
| |
|
|||||||||||||||||||||| |||||| ||||| || || ||||||| || |||||| ||||||| |
|
|
| T |
51259517 |
ctttacattccaacttcgaggtgaagtttgttaggagacaagcgaacatggttgctcatagcttagct |
51259450 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 2 - 38
Target Start/End: Original strand, 47377610 - 47377646
Alignment:
| Q |
2 |
tgggaaacaagttccctttcccaaattaaatggcacc |
38 |
Q |
| |
|
|||||||||| | |||||||||||||||||||||||| |
|
|
| T |
47377610 |
tgggaaacaactcccctttcccaaattaaatggcacc |
47377646 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 9)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 54 - 196
Target Start/End: Complemental strand, 9328590 - 9328448
Alignment:
| Q |
54 |
ctttacattccaacttcgaggtaaagtttattaggcgaaaaatgaacatgattactcataccttagctcagacgacatgttcttatgctagtcaccatat |
153 |
Q |
| |
|
||||||||||||||||||| || |||||| ||||| || || ||||||| || ||||||| |||||| |||| | | ||||| |||||||||| ||| |
|
|
| T |
9328590 |
ctttacattccaacttcgatgtgaagtttgttaggagacaagcgaacatggttgctcatactttagctacgacgtcctattcttgggctagtcaccgtat |
9328491 |
T |
 |
| Q |
154 |
ttttgagatttctccgatttgtattgaacatttgttgattaat |
196 |
Q |
| |
|
|||| | ||| ||| |||||||||||||| |||||||||| |
|
|
| T |
9328490 |
ttttaatttttatccttcttgtattgaacattggttgattaat |
9328448 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 54 - 196
Target Start/End: Original strand, 16732132 - 16732274
Alignment:
| Q |
54 |
ctttacattccaacttcgaggtaaagtttattaggcgaaaaatgaacatgattactcataccttagctcagacgacatgttcttatgctagtcaccatat |
153 |
Q |
| |
|
|||||||||||||||||||||| |||||| ||||| || || ||||||| || ||||||| |||||| | || ||||||| |||||||||| ||| |
|
|
| T |
16732132 |
ctttacattccaacttcgaggtgaagtttgttaggagacaagcgaacatggttgctcatactttagctagggcggactgttcttgggctagtcaccgtat |
16732231 |
T |
 |
| Q |
154 |
ttttgagatttctccgatttgtattgaacatttgttgattaat |
196 |
Q |
| |
|
|||| | || ||| ||||||||||||||| |||||||||| |
|
|
| T |
16732232 |
tttttattcttatcctttttgtattgaacattggttgattaat |
16732274 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 54 - 196
Target Start/End: Original strand, 17710266 - 17710408
Alignment:
| Q |
54 |
ctttacattccaacttcgaggtaaagtttattaggcgaaaaatgaacatgattactcataccttagctcagacgacatgttcttatgctagtcaccatat |
153 |
Q |
| |
|
|||||||||||||||||||||| |||||| ||||| || || ||||||| || ||||||| |||||| | || ||||||| |||||||||| ||| |
|
|
| T |
17710266 |
ctttacattccaacttcgaggtgaagtttgttaggagacaagcgaacatggttgctcatactttagctagggcggactgttcttgggctagtcaccgtat |
17710365 |
T |
 |
| Q |
154 |
ttttgagatttctccgatttgtattgaacatttgttgattaat |
196 |
Q |
| |
|
|||| | || ||| ||||||||||||||| |||||||||| |
|
|
| T |
17710366 |
tttttattcttatcctttttgtattgaacattggttgattaat |
17710408 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 54 - 196
Target Start/End: Original strand, 24251638 - 24251777
Alignment:
| Q |
54 |
ctttacattccaacttcgaggtaaagtttattaggcgaaaaatgaacatgattactcataccttagctcagacgacatgttcttatgctagtcaccatat |
153 |
Q |
| |
|
|||||||||||||||||||||| |||||| ||||| || || ||||||| || ||||||| |||||| | || | ||||||| |||||||||| ||| |
|
|
| T |
24251638 |
ctttacattccaacttcgaggtgaagtttgttaggagacaagcgaacatggttgctcatactttagctagggcggcctgttcttgagctagtcaccgtat |
24251737 |
T |
 |
| Q |
154 |
ttttgagatttctccgatttgtattgaacatttgttgattaat |
196 |
Q |
| |
|
|||| | || ||| |||||||||||||| |||||||||| |
|
|
| T |
24251738 |
ttttaattcttatcc---ttgtattgaacattggttgattaat |
24251777 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 54 - 121
Target Start/End: Complemental strand, 29200943 - 29200876
Alignment:
| Q |
54 |
ctttacattccaacttcgaggtaaagtttattaggcgaaaaatgaacatgattactcataccttagct |
121 |
Q |
| |
|
|||||||||||||||||||||| |||||| ||||| || ||| ||||||| || ||||||| |||||| |
|
|
| T |
29200943 |
ctttacattccaacttcgaggtgaagtttgttaggagacaaacgaacatggttgctcatactttagct |
29200876 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 54 - 157
Target Start/End: Original strand, 44481286 - 44481389
Alignment:
| Q |
54 |
ctttacattccaacttcgaggtaaagtttattaggcgaaaaatgaacatgattactcataccttagctcagacgacatgttcttatgctagtcaccatat |
153 |
Q |
| |
|
||||||||| |||||||||||| |||||| ||||| || || ||||||| || ||||||| |||||| | || | ||||||| |||||||||||||| |
|
|
| T |
44481286 |
ctttacatttcaacttcgaggtgaagtttgttaggagacaagcgaacatggttgctcatactttagctagggcggcctgttcttgggctagtcaccatat |
44481385 |
T |
 |
| Q |
154 |
tttt |
157 |
Q |
| |
|
|||| |
|
|
| T |
44481386 |
tttt |
44481389 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 57 - 91
Target Start/End: Complemental strand, 43783022 - 43782988
Alignment:
| Q |
57 |
tacattccaacttcgaggtaaagtttattaggcga |
91 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||| |
|
|
| T |
43783022 |
tacattccaacttcgaggtaaagtttattcggcga |
43782988 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 140 - 201
Target Start/End: Original strand, 6216578 - 6216639
Alignment:
| Q |
140 |
gctagtcaccatatttttgagatttctccgatttgtattgaacatttgttgattaataatat |
201 |
Q |
| |
|
|||| ||||||| |||| ||||||||||| |||||||||||||||| | ||||||||||| |
|
|
| T |
6216578 |
gctaatcaccatgttttcgagatttctcctttttgtattgaacatttccttattaataatat |
6216639 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 54 - 159
Target Start/End: Complemental strand, 33224548 - 33224443
Alignment:
| Q |
54 |
ctttacattccaacttcgaggtaaagtttattaggcgaaaaatgaacatgattactcataccttagctcagacgacatgttcttatgctagtcaccatat |
153 |
Q |
| |
|
||||||||||||||||| |||| |||||| ||||| || || |||||||||| |||||| |||| || | | | ||||||| |||||||||| ||| |
|
|
| T |
33224548 |
ctttacattccaacttcaaggtgaagtttgttaggagacaagcgaacatgattgctcataacttatctagggcagcctgttcttgggctagtcaccgtat |
33224449 |
T |
 |
| Q |
154 |
ttttga |
159 |
Q |
| |
|
|||||| |
|
|
| T |
33224448 |
ttttga |
33224443 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 11)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 51 - 120
Target Start/End: Complemental strand, 10244561 - 10244492
Alignment:
| Q |
51 |
tagctttacattccaacttcgaggtaaagtttattaggcgaaaaatgaacatgattactcataccttagc |
120 |
Q |
| |
|
|||||||| |||||||||||||||| |||||||||| ||| || ||||||||||| ||||||| ||||| |
|
|
| T |
10244561 |
tagctttagattccaacttcgaggtgaagtttattaagcggcaagtgaacatgattgctcatactttagc |
10244492 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 54 - 157
Target Start/End: Original strand, 9710154 - 9710257
Alignment:
| Q |
54 |
ctttacattccaacttcgaggtaaagtttattaggcgaaaaatgaacatgattactcataccttagctcagacgacatgttcttatgctagtcaccatat |
153 |
Q |
| |
|
|||||||||||||||||||||| |||||| ||||| || || ||||||| || ||||||| |||||| ||||| ||||||| |||||| ||| ||| |
|
|
| T |
9710154 |
ctttacattccaacttcgaggtgaagtttgttaggagacaagcgaacatggttgctcatactttagctaagacggtctgttcttgggctagtaaccgtat |
9710253 |
T |
 |
| Q |
154 |
tttt |
157 |
Q |
| |
|
|||| |
|
|
| T |
9710254 |
tttt |
9710257 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 30545446 - 30545483
Alignment:
| Q |
1 |
atgggaaacaagttccctttcccaaattaaatggcacc |
38 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
30545446 |
atgggaaacaacttccctttcccaaattaaatggcacc |
30545483 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 44154313 - 44154276
Alignment:
| Q |
1 |
atgggaaacaagttccctttcccaaattaaatggcacc |
38 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
44154313 |
atgggaaacaacttccctttcccaaattaaatggcacc |
44154276 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 54 - 121
Target Start/End: Complemental strand, 34695892 - 34695825
Alignment:
| Q |
54 |
ctttacattccaacttcgaggtaaagtttattaggcgaaaaatgaacatgattactcataccttagct |
121 |
Q |
| |
|
|||||||||||||||||||||| |||||| ||||| || || ||||||| || ||||||| |||||| |
|
|
| T |
34695892 |
ctttacattccaacttcgaggtgaagtttgttaggagacaagcgaacatggttgctcatactttagct |
34695825 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 54 - 121
Target Start/End: Complemental strand, 34718304 - 34718237
Alignment:
| Q |
54 |
ctttacattccaacttcgaggtaaagtttattaggcgaaaaatgaacatgattactcataccttagct |
121 |
Q |
| |
|
|||||||||||||||||||||| |||||| ||||| || || ||||||| || ||||||| |||||| |
|
|
| T |
34718304 |
ctttacattccaacttcgaggtgaagtttgttaggagacaagcgaacatggttgctcatactttagct |
34718237 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 51 - 157
Target Start/End: Original strand, 88755 - 88861
Alignment:
| Q |
51 |
tagctttacattccaacttcgaggtaaagtttattaggcgaaaaatgaacatgattactcataccttagctcagacgacatgttcttatgctagtcacca |
150 |
Q |
| |
|
|||||||||||||||||||| | || ||||||||| || || || ||||||| || ||||||| |||||| | || | ||||||| |||||||||| |
|
|
| T |
88755 |
tagctttacattccaacttcaacgtgaagtttatttggagacaagcgaacatggttgctcatactttagctagggcggcctgttcttgggctagtcaccg |
88854 |
T |
 |
| Q |
151 |
tattttt |
157 |
Q |
| |
|
||||||| |
|
|
| T |
88855 |
tattttt |
88861 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 30544764 - 30544727
Alignment:
| Q |
1 |
atgggaaacaagttccctttcccaaattaaatggcacc |
38 |
Q |
| |
|
||||||||||| |||| ||||||||||||||||||||| |
|
|
| T |
30544764 |
atgggaaacaacttccatttcccaaattaaatggcacc |
30544727 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 44154993 - 44155030
Alignment:
| Q |
1 |
atgggaaacaagttccctttcccaaattaaatggcacc |
38 |
Q |
| |
|
||||||||||| |||||||||||||||||||| ||||| |
|
|
| T |
44154993 |
atgggaaacaacttccctttcccaaattaaatagcacc |
44155030 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 40 - 88
Target Start/End: Complemental strand, 1417983 - 1417935
Alignment:
| Q |
40 |
tatttataaagtagctttacattccaacttcgaggtaaagtttattagg |
88 |
Q |
| |
|
||||||| || || |||||||||||||||||||||| |||||| ||||| |
|
|
| T |
1417983 |
tatttatcaattatctttacattccaacttcgaggtgaagtttgttagg |
1417935 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 54 - 86
Target Start/End: Complemental strand, 36445507 - 36445475
Alignment:
| Q |
54 |
ctttacattccaacttcgaggtaaagtttatta |
86 |
Q |
| |
|
|||||||||||||||||||||| |||||||||| |
|
|
| T |
36445507 |
ctttacattccaacttcgaggtgaagtttatta |
36445475 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 54 - 157
Target Start/End: Complemental strand, 34497360 - 34497257
Alignment:
| Q |
54 |
ctttacattccaacttcgaggtaaagtttattaggcgaaaaatgaacatgattactcataccttagctcagacgacatgttcttatgctagtcaccatat |
153 |
Q |
| |
|
|||||||||||||||||||||| |||||| ||||| || || ||||||| || |||||| ||||||| | || | ||||||| |||||||||| ||| |
|
|
| T |
34497360 |
ctttacattccaacttcgaggtgaagtttgttaggagacaagcgaacatggttgctcatagcttagctagggcggcctgttcttgggctagtcaccgtat |
34497261 |
T |
 |
| Q |
154 |
tttt |
157 |
Q |
| |
|
|||| |
|
|
| T |
34497260 |
tttt |
34497257 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 54 - 157
Target Start/End: Original strand, 55199710 - 55199813
Alignment:
| Q |
54 |
ctttacattccaacttcgaggtaaagtttattaggcgaaaaatgaacatgattactcataccttagctcagacgacatgttcttatgctagtcaccatat |
153 |
Q |
| |
|
|||||||||||||||||||||| |||||| ||||| || || ||||||| || |||||| ||||||| | || | ||||||| |||||| ||||||| |
|
|
| T |
55199710 |
ctttacattccaacttcgaggtgaagtttgttaggagacaagcgaacatggttgctcatagcttagctacggcggcctgttcttgcgctagtgaccatat |
55199809 |
T |
 |
| Q |
154 |
tttt |
157 |
Q |
| |
|
|||| |
|
|
| T |
55199810 |
tttt |
55199813 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 54 - 200
Target Start/End: Complemental strand, 647158 - 647012
Alignment:
| Q |
54 |
ctttacattccaacttcgaggtaaagtttattaggcgaaaaatgaacatgattactcataccttagctcagacgacatgttcttatgctagtcaccatat |
153 |
Q |
| |
|
|||||||||||||||||||||| || ||| ||||| || ||| ||||||| || ||||||| |||| | | || | ||||||| ||| ||||| ||| |
|
|
| T |
647158 |
ctttacattccaacttcgaggtgaaatttgttaggagacaaacgaacatggttgctcatactttagttagggcggcctgttcttggactaatcaccgtat |
647059 |
T |
 |
| Q |
154 |
ttttgagatttctccgatttgtattgaacatttgttgattaataata |
200 |
Q |
| |
|
|||||| ||| || |||||||||||||| |||||||||||||| |
|
|
| T |
647058 |
ttttgaattttatctttcttgtattgaacattggttgattaataata |
647012 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 54 - 119
Target Start/End: Complemental strand, 31341713 - 31341648
Alignment:
| Q |
54 |
ctttacattccaacttcgaggtaaagtttattaggcgaaaaatgaacatgattactcataccttag |
119 |
Q |
| |
|
||||||||||||||||| |||| |||||||||||| || ||| ||||| || |||||||||||| |
|
|
| T |
31341713 |
ctttacattccaacttcaaggtgaagtttattaggagacaaactgacatggttgctcataccttag |
31341648 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 54 - 157
Target Start/End: Complemental strand, 27608891 - 27608788
Alignment:
| Q |
54 |
ctttacattccaacttcgaggtaaagtttattaggcgaaaaatgaacatgattactcataccttagctcaga-cgacatgttcttatgctagtcaccata |
152 |
Q |
| |
|
|||||||||||||||||||| | |||||| ||||| || || ||||||| || |||||| ||||||| ||| || | ||||||| |||||||||| || |
|
|
| T |
27608891 |
ctttacattccaacttcgagctgaagtttgttaggagacaagcgaacatggttgctcatagcttagct-agagcggcctgttcttgggctagtcaccgta |
27608793 |
T |
 |
| Q |
153 |
ttttt |
157 |
Q |
| |
|
||||| |
|
|
| T |
27608792 |
ttttt |
27608788 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 54 - 157
Target Start/End: Complemental strand, 34104453 - 34104350
Alignment:
| Q |
54 |
ctttacattccaacttcgaggtaaagtttattaggcgaaaaatgaacatgattactcataccttagctcagacgacatgttcttatgctagtcaccatat |
153 |
Q |
| |
|
|||||||||| ||||||||||| |||||| ||||| || || |||||| || |||||| ||||||| | || ||||||||| |||||||||| ||| |
|
|
| T |
34104453 |
ctttacattcgaacttcgaggtgaagtttgttaggagacaagcaaacatggttgctcatagcttagctatggcggcatgttcttgggctagtcaccgtat |
34104354 |
T |
 |
| Q |
154 |
tttt |
157 |
Q |
| |
|
|||| |
|
|
| T |
34104353 |
tttt |
34104350 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0922 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0922
Description:
Target: scaffold0922; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 56 - 157
Target Start/End: Complemental strand, 250 - 149
Alignment:
| Q |
56 |
ttacattccaacttcgaggtaaagtttattaggcgaaaaatgaacatgattactcataccttagctcagacgacatgttcttatgctagtcaccatattt |
155 |
Q |
| |
|
||||||||||||||||| || |||||| ||||| || || ||||| | || ||||||| ||| || |||||| ||||||| |||||||||| ||||| |
|
|
| T |
250 |
ttacattccaacttcgatgtgaagtttgttaggagacaagcgaacacggttgctcatactttaactaggacgacttgttcttgggctagtcaccgtattt |
151 |
T |
 |
| Q |
156 |
tt |
157 |
Q |
| |
|
|| |
|
|
| T |
150 |
tt |
149 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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