View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17287_low_35 (Length: 374)
Name: NF17287_low_35
Description: NF17287
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17287_low_35 |
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Alignment Details
Target: chr7 (Bit Score: 257; Significance: 1e-143; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 16 - 356
Target Start/End: Complemental strand, 36570546 - 36570206
Alignment:
| Q |
16 |
cttaaattaataaattttgcttagnnnnnnnttattagatcagaagggttaataggttttatacatacatatgaggacaaagtcaaagaaagttggatat |
115 |
Q |
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| T |
36570546 |
cttaaattaataaattttgcttagaaaaaaattattagatcagaagggttaataggttttatacatacatatgaggacaaagtcaaagaaagttggatat |
36570447 |
T |
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| Q |
116 |
atatctggctaacagctatatatgttttgtatccagtcactctcctagcaaatgttccaacatnnnnnnnnnnnnnnnnnnnnntttttcctttccattt |
215 |
Q |
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| T |
36570446 |
atatctggctaacagctatatatgttttgtatccagtcactctcctagcaaatgttccaacataaaaggaaaaaagaaagaaaatttttcctttccattt |
36570347 |
T |
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| Q |
216 |
aaactaattaattggtactgatattaatcatttcacaaaataattaatattaagataattaacatataatgattaatcattcattatcttgctctacttc |
315 |
Q |
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| T |
36570346 |
aaactaattaattggtactgatattaatcatttcacaaaataattaatattaagataattaacatataatgattaatcattcattatcttgctctacttc |
36570247 |
T |
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| Q |
316 |
agaagctggttcatcctcttcttcaaatccatcacacccat |
356 |
Q |
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| T |
36570246 |
agaagctggttcatcctcttcttcaaatccatcacacccat |
36570206 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 294 - 349
Target Start/End: Original strand, 21035512 - 21035567
Alignment:
| Q |
294 |
attcattatcttgctctacttcagaagctggttcatcctcttcttcaaatccatca |
349 |
Q |
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||||||||||||| || ||||||||||| |||||||||||||||||||| |||||| |
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| T |
21035512 |
attcattatcttgttcaacttcagaagcaggttcatcctcttcttcaaaaccatca |
21035567 |
T |
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