View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17287_low_36 (Length: 372)
Name: NF17287_low_36
Description: NF17287
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17287_low_36 |
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Alignment Details
Target: chr2 (Bit Score: 322; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 10 - 355
Target Start/End: Complemental strand, 36543039 - 36542694
Alignment:
| Q |
10 |
aagaatatcaagcattgtgaaaagccaaatatcacaaaaacaccatatacttagaaaactttcagtcactaaataatattattctcattcaaatggacaa |
109 |
Q |
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| T |
36543039 |
aagaatatcaagcattgtgaaaagccaaatatcacaaaaacaccatatacttagaaaactttcagacaataaataatattattctcattcaaatgtaaaa |
36542940 |
T |
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| Q |
110 |
ctctaatgccccaaccaacccgattgctttatagattttaaagtggagaatttgattaaggtgaaagcggtgggggcaaaattggtctatgagaagatga |
209 |
Q |
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| T |
36542939 |
ctctaatgccccaaccaacccgattgctttatagattttaaagtggagaatttgattaaggtgaaagcggtgggggcaaaattggtctatgagaagatga |
36542840 |
T |
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| Q |
210 |
tgttgttggattgattataggagaatattaaagtgagtgaatttgatagaaataatcattatggatagagaatgcattgtcaagatatttttatctcaaa |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
36542839 |
tgttgttggattgattataggagaatattaaagtgagtgaatttgatagaaataatcattatggatagagaatgcattgtcaggatatttttatctcaaa |
36542740 |
T |
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| Q |
310 |
agatacaaaattgtctcattgcatattcaagagcataccttaagtt |
355 |
Q |
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| T |
36542739 |
agatacaaaattgtctcactgcatattcaagagcataccttaagtt |
36542694 |
T |
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