View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17287_low_37 (Length: 369)
Name: NF17287_low_37
Description: NF17287
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17287_low_37 |
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| [»] chr6 (3 HSPs) |
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| [»] chr7 (4 HSPs) |
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| [»] scaffold0024 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 352; Significance: 0; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 18 - 369
Target Start/End: Complemental strand, 6922319 - 6921968
Alignment:
| Q |
18 |
acctactgttctcatgaatatccctcctctggtaatcctccatgacgaccttatcgtcgaagtcctaatgttcctcgacataaaatctctaatgtcgatg |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6922319 |
acctactgttctcatgaatatccctcctctggtaatcctccatgacgaccttatcgtcgaagtcctaatgttcctcgacataaaatctctaatgtcgatg |
6922220 |
T |
|
| Q |
118 |
aagtgtgtttccaagtcttggaaaaccctaatcttggatcccgactttgccaaaatgcaccttaagaagcaatctacacgaacaagtcacctcgcaatcc |
217 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6922219 |
aagtgtgtttccaagtcttggaaaaccctaatcttggatcccgactttgccaaaatgcaccttaagaagcaatctacacgaacaagtcacctcgcaatcc |
6922120 |
T |
|
| Q |
218 |
tctcaaacatgtctgaaggttcgggagaatgtagggcagtgcccatctctcgtttgctggagagtaactcacattctataacccttaccgatccatacca |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6922119 |
tctcaaacatgtctgaaggttcgggagaatgtagggcagtgcccatctctcgtttgctggagagtaactcacattctataacccttaccgatccatacca |
6922020 |
T |
|
| Q |
318 |
ccaattcttttacaaggatgctggtagggttgttggttcatgcaatggattg |
369 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
6922019 |
ccaattcttttacaaggatgctggtagggttgttggttcatgcaatggattg |
6921968 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 21 - 369
Target Start/End: Complemental strand, 6948845 - 6948498
Alignment:
| Q |
21 |
tactgttctcatgaatatccctcctctggtaatcctccatgacgaccttatcgtcgaagtcctaatgttcctcgacataaaatctctaatgtcgatgaag |
120 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||| ||||||| || ||||||||||||||| ||||||| |
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| T |
6948845 |
tactgttctcatgaatatccctcctctggtaattctccatgacgaccttatcgttgaagtcctaacgttcctc-acgtaaaatctctaatgttgatgaag |
6948747 |
T |
|
| Q |
121 |
tgtgtttccaagtcttggaaaaccctaatcttggatcccgactttgccaaaatgcaccttaagaagcaatctacacgaacaagtcacctcgcaatcctct |
220 |
Q |
| |
|
||||||| |||||| |||||||||||||| | |||||| |||| ||||||||||||||||||||||||||||||| || |||||||||||| | |||| |
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| T |
6948746 |
tgtgtttgcaagtcatggaaaaccctaatatccgatccctacttcgccaaaatgcaccttaagaagcaatctacaccaatgagtcacctcgcatttctct |
6948647 |
T |
|
| Q |
221 |
caaacatgtctgaaggttcgggagaatgtagggcagtgcccatctctcgtttgctggagagtaactcacattctataacccttaccgatccataccacca |
320 |
Q |
| |
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||||||||||| ||||||||| |||||||||| |||| ||||||||||| |||||||||||||||||||||||| | |||||||||||||| |||||||| |
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| T |
6948646 |
caaacatgtctaaaggttcggcagaatgtaggacagtccccatctctcgcttgctggagagtaactcacattctctcacccttaccgatccttaccacca |
6948547 |
T |
|
| Q |
321 |
attcttttacaaggatgctggtagggttgttggttcatgcaatggattg |
369 |
Q |
| |
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|||| ||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
6948546 |
attcccttacaaggacgctggtagggttgttggttcatgcaatggattg |
6948498 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 22 - 369
Target Start/End: Complemental strand, 6936168 - 6935830
Alignment:
| Q |
22 |
actgttctcatgaatatccctcctctggtaatcctccatgacgaccttatcgtcgaagtcctaatgttcctcgacataaaatctctaatgtcgatgaagt |
121 |
Q |
| |
|
|||||||||||||||||| || |||| ||||||||| |||||| ||||||| | ||||| ||| | ||| ||| ||||| |||| ||| |||||||| |
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| T |
6936168 |
actgttctcatgaatatcaatcgtctgataatcctccctgacgaacttatcgacaaagtcgtaacgccccttgacgtaaaaactctgatgctgatgaagt |
6936069 |
T |
|
| Q |
122 |
gtgtttccaagtcttggaaaaccctaatcttggatcccgactttgccaaaatgcaccttaagaagcaatctacacgaacaagtcacctcgcaatcctctc |
221 |
Q |
| |
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|||||| |||||| |||||||||||||||| ||||| ||||| | ||||| ||||| |||||||||||||||| |||||||| | ||| | |
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| T |
6936068 |
gtgtttgcaagtcatggaaaaccctaatctccgatccagacttcgtcaaaaggcaccataagaagcaatctaca---------cacctcgcttttctcac |
6935978 |
T |
|
| Q |
222 |
aaacatgtctgaaggttcgggagaatgtagggcagtgcccatctctcgtttgctggagagtaactcacattctataacccttaccgatccataccaccaa |
321 |
Q |
| |
|
||||| | | ||| || | ||||||||| || |||||||||||| ||||| ||||| ||| || ||||||| |||||| ||| || | | ||||| |
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| T |
6935977 |
aaacaattataaagatttgcgagaatgtaaggtcgtgcccatctctagtttgatggagggtacttcgaattctatcacccttgccgtcccttccaaccaa |
6935878 |
T |
|
| Q |
322 |
ttcttttacaaggatgctggtagggttgttggttcatgcaatggattg |
369 |
Q |
| |
|
|||| ||||||||| ||||||||| ||||||||||||||||||||||| |
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| T |
6935877 |
ttctattacaaggacgctggtaggattgttggttcatgcaatggattg |
6935830 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 216; Significance: 1e-118; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 22 - 369
Target Start/End: Complemental strand, 1986921 - 1986576
Alignment:
| Q |
22 |
actgttctcatgaatatccctcctctggtaatcctccatgacgaccttatcgtcgaagtcctaatgttcctcgacataaaatctctaatgtcgatgaagt |
121 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||| |||||||||| ||||||||||||||| |||||||| |
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| T |
1986921 |
actgttctcatgaatatccctcctctggtaattctccatgacgaacttatcgtcgaagtcctaacgttcctcgacgtaaaatctctaatgttgatgaagt |
1986822 |
T |
|
| Q |
122 |
gtgtttccaagtcttggaaaaccctaatcttggatcccgactttgccaaaatgcaccttaagaagcaatctacacgaacaagtcacctcgcaatcctctc |
221 |
Q |
| |
|
|||||| |||||| |||||||||||||| | ||||| |||| ||||||||||||||||| ||||||||||||| || ||||||| |||| | ||||| |
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| T |
1986821 |
gtgtttgcaagtcatggaaaaccctaatatcccatccctacttcgccaaaatgcaccttaa-aagcaatctacaccaatgagtcaccccgcatttctctc |
1986723 |
T |
|
| Q |
222 |
aaacatgtctgaaggttcgggagaatgtagggcagtgcccatctctcgtttgctggagagtaactcacattctataacccttaccgatccataccaccaa |
321 |
Q |
| |
|
|||||| ||| ||||||||||||||||||||| | |||| |||||||| || |||| |||||||||||||||||| |||||||||||||| ||||||||| |
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|
| T |
1986722 |
aaacatatctaaaggttcgggagaatgtaggg-aatgcctatctctcgcttactggtgagtaactcacattctatcacccttaccgatccttaccaccaa |
1986624 |
T |
|
| Q |
322 |
ttcttttacaaggatgctggtagggttgttggttcatgcaatggattg |
369 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
1986623 |
ttcttttacaaggacgctggtagggttgttggttcatgcaatggattg |
1986576 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 45 - 278
Target Start/End: Complemental strand, 13417873 - 13417640
Alignment:
| Q |
45 |
tctggtaatcctccatgacgaccttatcgtcgaagtcctaatgttcctcgacataaaatctctaatgtcgatgaagtgtgtttccaagtcttggaaaacc |
144 |
Q |
| |
|
||||||||| ||||||| | | ||||| || ||| |||||| |||||| || |||||||||| || |||||||||||| | |||||| ||||||||| |
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| T |
13417873 |
tctggtaattctccatgccaaacttattgttgaaatcctaacgttccttgatgtaaaatctctgataaggatgaagtgtgtatgcaagtcgtggaaaacc |
13417774 |
T |
|
| Q |
145 |
ctaatcttggatcccgactttgccaaaatgcaccttaagaagcaatctacacgaacaagtcacctcgcaatcctctcaaacatgtctgaaggttcgggag |
244 |
Q |
| |
|
||| ||| ||||| ||| | ||||||||||||||||| |||||||||||||| | ||||| ||| | ||||||| ||||| ||||||||| || |
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|
| T |
13417773 |
ctattctctgatccactcttcgtcaaaatgcaccttaagaggcaatctacacgaatgacacacctagcacttttctcaaaaatgtcccaaggttcggtag |
13417674 |
T |
|
| Q |
245 |
aatgtagggcagtgcccatctctcgtttgctgga |
278 |
Q |
| |
|
| ||||||||||| |||||||||||||||||||| |
|
|
| T |
13417673 |
attgtagggcagtacccatctctcgtttgctgga |
13417640 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 168 - 369
Target Start/End: Complemental strand, 15572735 - 15572528
Alignment:
| Q |
168 |
caaaatgcaccttaagaagcaatctacacgaacaagtcacctcgcaatcctctcaaacatgtctgaaggttcgggagaatgtagggcagtgcccatctct |
267 |
Q |
| |
|
||||||||||||||||||||| ||||| |||| | ||| || ||||| || || ||| |||||||||||| ||||| ||||||||||| || | |||| |
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|
| T |
15572735 |
caaaatgcaccttaagaagcattctacgcgaatgactcatcttgcaattttcacagacaagtctgaaggttccggagattgtagggcagtaccgacctct |
15572636 |
T |
|
| Q |
268 |
cgtttgctggagagtaactcacattctataacccttac------cgatccataccaccaattcttttacaaggatgctggtagggttgttggttcatgca |
361 |
Q |
| |
|
|||||| |||| | || || |||| ||||||||| | |||||| |||||| |||| || |||||| | |||| |||||||||||||||||| |
|
|
| T |
15572635 |
cgtttgttggaaactacttcgaattccataacccttcccgacgacgatccttaccactgattcaatttcaaggacggtggtggggttgttggttcatgca |
15572536 |
T |
|
| Q |
362 |
atggattg |
369 |
Q |
| |
|
|||||||| |
|
|
| T |
15572535 |
atggattg |
15572528 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 228 - 276
Target Start/End: Complemental strand, 18515624 - 18515576
Alignment:
| Q |
228 |
gtctgaaggttcgggagaatgtagggcagtgcccatctctcgtttgctg |
276 |
Q |
| |
|
|||||||||||| ||||| ||||| ||||| ||||| |||||||||||| |
|
|
| T |
18515624 |
gtctgaaggttccggagattgtagagcagtacccatttctcgtttgctg |
18515576 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0024 (Bit Score: 89; Significance: 8e-43; HSPs: 1)
Name: scaffold0024
Description:
Target: scaffold0024; HSP #1
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 55 - 335
Target Start/End: Original strand, 161050 - 161330
Alignment:
| Q |
55 |
ctccatgacgaccttatcgtcgaagtcctaatgttcctcgacataaaatctctaatgtcgatgaagtgtgtttccaagtcttggaaaaccctaatcttgg |
154 |
Q |
| |
|
||||||||||| ||||| |||||| |||||| |||||| ||| |||||||||| ||| |||||||||||||| ||||||||||||||||||||||| | |
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|
| T |
161050 |
ctccatgacgaacttattgtcgaaatcctaacgttccttgacgtaaaatctcttatgcagatgaagtgtgtttgcaagtcttggaaaaccctaatctccg |
161149 |
T |
|
| Q |
155 |
atcccgactttgccaaaatgcaccttaagaagcaatctacacgaacaagtcacctcgcaatcctctcaaacatgtctgaaggttcgggagaatgtagggc |
254 |
Q |
| |
|
|||| | ||| | |||||||||| ||||||| ||||||||| ||| | |||||||| | |||||||||| || ||||||||| || || |||| ||| |
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|
| T |
161150 |
atccagtcttcgtcaaaatgcactttaagaaacaatctacaggaatgacacacctcgcttttctctcaaacaagtttgaaggttctggtgattgtatggc |
161249 |
T |
|
| Q |
255 |
agtgcccatctctcgtttgctggagagtaactcacattctataacccttaccgatccataccaccaattcttttacaagga |
335 |
Q |
| |
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| ||||||||||||||| ||||| || || |||||| |||||||| ||||| |||||||||||| ||||||||| |
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|
| T |
161250 |
tgcacccatctctcgtttgatggagtgttcttcgagttctatcacccttactgatccttaccaccaattcaattacaagga |
161330 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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