View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17287_low_40 (Length: 362)
Name: NF17287_low_40
Description: NF17287
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17287_low_40 |
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Alignment Details
Target: chr7 (Bit Score: 349; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 1 - 349
Target Start/End: Original strand, 35602523 - 35602871
Alignment:
| Q |
1 |
tcaccacaaaacaattaatctgtggaactaactatcaacaatgctttgatccatgctcaaagctggtgcggattcgtcattttcatggtcagaatcagag |
100 |
Q |
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| T |
35602523 |
tcaccacaaaacaattaatctgtggaactaactatcaacaatgctttgatccatgctcaaagctggtgcggattcgtcattttcatggtcagaatcagag |
35602622 |
T |
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| Q |
101 |
ctaacagtatcggtttccttccctggacaaccaatttgatcacattcaacaacttcattgttgtaatttccaaaatcaagacacctatttgaaggcgtta |
200 |
Q |
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| T |
35602623 |
ctaacagtatcggtttccttccctggacaaccaatttgatcacattcaacaacttcattgttgtaatttccaaaatcaagacacctatttgaaggcgtta |
35602722 |
T |
|
| Q |
201 |
aggcttctttcttgacaacattaaacacaatcccattaggaatcttttcagtctgcaaaagatcgccttcagttaccagtatgctagatccattcacaac |
300 |
Q |
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| T |
35602723 |
aggcttctttcttgacaacattaaacacaatcccattaggaatcttttcagtctgcaaaagatcgccttcagttaccagtatgctagatccattcacaac |
35602822 |
T |
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| Q |
301 |
cctgttgtcaatttccttctgctcggattccgagttcctatctggtcct |
349 |
Q |
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| T |
35602823 |
cctgttgtcaatttccttctgctcggattccgagttcctatctggtcct |
35602871 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 67; Significance: 1e-29; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 174 - 296
Target Start/End: Complemental strand, 39132935 - 39132813
Alignment:
| Q |
174 |
aatcaagacacctatttgaaggcgttaaggcttctttcttgacaacattaaacacaatcccattaggaatcttttcagtctgcaaaagatcgccttcagt |
273 |
Q |
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| T |
39132935 |
aatcatgactcctacttgaaggtgttaagtcttctttcttgacaacattaaacacaattccattatggattctctcaggctgcaaaagatcaccttcagt |
39132836 |
T |
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| Q |
274 |
taccagtatgctagatccattca |
296 |
Q |
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| T |
39132835 |
taccattatgctagatccattca |
39132813 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 204 - 296
Target Start/End: Original strand, 30136666 - 30136758
Alignment:
| Q |
204 |
cttctttcttgacaacattaaacacaatcccattaggaatcttttcagtctgcaaaagatcgccttcagttaccagtatgctagatccattca |
296 |
Q |
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||||||||||||||||| |||||||||| |||||| | || |||| |||||||| ||| |||||||||| | ||||||||| ||||||| |
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| T |
30136666 |
cttctttcttgacaacactaaacacaattccattaagcattctttcgtgctgcaaaaaatcaccttcagttagaattatgctagacccattca |
30136758 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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