View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17287_low_41 (Length: 361)
Name: NF17287_low_41
Description: NF17287
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17287_low_41 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 264; Significance: 1e-147; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 12 - 361
Target Start/End: Complemental strand, 37979431 - 37979085
Alignment:
| Q |
12 |
tcatcaaaacagtctatttccatgatcatcaacaaaattacaccatgctannnnnnnaataatacaaagccattgccatgttaattaattggtgaggcta |
111 |
Q |
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| T |
37979431 |
tcatcaaaacaatctatttccatgatcatcaataaaattacaccatgctatttttt---taatacaaagccattgccatgttaattaattggtgaggcta |
37979335 |
T |
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| Q |
112 |
attccttctaaagttctaattaannnnnnnccctttatcctccaatgtctgcatggctgcataatatacccatcctctttccctaatacaatatgaatta |
211 |
Q |
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| T |
37979334 |
attccttctaaagttctaattaatttttttccctttatcctccaatgtctgcatggctgcataatatacccatcctctttccctaatacaatatgaatta |
37979235 |
T |
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| Q |
212 |
aggggaatggcagggagaaaacnnnnnnncagtttagtagtcactagtcagtgtagagacatgccatgtgtagaaacatgcaagcttcttagataaataa |
311 |
Q |
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| T |
37979234 |
aggggaatggcagggagaaaacaaaaaaacagtttagtagtcactagtcagtgtagagacatgccatgtgtagaaacatgcaagcttcttagataaataa |
37979135 |
T |
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| Q |
312 |
aaagatacaagaaaagtaagaaggaaaacagatgaattgaataaaatatt |
361 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
37979134 |
aaagatacaagaaaagtaagaagaaaaacagatgaattgaataaaatatt |
37979085 |
T |
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