View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17287_low_42 (Length: 359)

Name: NF17287_low_42
Description: NF17287
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17287_low_42
NF17287_low_42
[»] chr4 (18 HSPs)
chr4 (141-351)||(55759098-55759326)
chr4 (307-351)||(55757710-55757754)
chr4 (307-351)||(55758058-55758102)
chr4 (307-351)||(55758750-55758794)
chr4 (309-351)||(55757884-55757926)
chr4 (309-351)||(55758232-55758274)
chr4 (309-351)||(55758406-55758448)
chr4 (309-351)||(55758580-55758622)
chr4 (309-351)||(55758924-55758966)
chr4 (42-75)||(55759392-55759425)
chr4 (276-307)||(55757772-55757803)
chr4 (276-307)||(55757946-55757977)
chr4 (276-307)||(55758120-55758151)
chr4 (276-307)||(55758294-55758325)
chr4 (276-307)||(55758468-55758499)
chr4 (276-307)||(55758812-55758843)
chr4 (276-307)||(55758986-55759017)
chr4 (276-305)||(55757600-55757629)
[»] chr2 (4 HSPs)
chr2 (237-307)||(38940705-38940779)
chr2 (235-300)||(38940552-38940621)
chr2 (144-184)||(38940438-38940478)
chr2 (314-350)||(38940623-38940659)


Alignment Details
Target: chr4 (Bit Score: 149; Significance: 1e-78; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 141 - 351
Target Start/End: Complemental strand, 55759326 - 55759098
Alignment:
Q  141 acgaatttgatttttcacaagtgttcttgttgattgagttttcaccacgttaattgattaatcatgaactttattcatcttaannnnnnnagtctaggtc 240  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||    
T  55759326 acgaatttgatttttcacaagtgttcttgttgattgagttttcaccacgttaattgattaatcatgaactttattcatcttaatttttttagtctaggtc 55759227  T
Q  241 ataatttgattattttcttcactaaccttttgtttagattgttgatatttagtacttgattgttta------------------gctgttttgattgatt 322  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                  ||||||||||||||||    
T  55759226 ataatttgattattttcttcactaaccttttgtttagattgttgatatttagtacttgattgtttagatttactgattattgatgctgttttgattgatt 55759127  T
Q  323 tttcaccataatctttgagtataatctac 351  Q
    |||||||||||||||||||||||||||||    
T  55759126 tttcaccataatctttgagtataatctac 55759098  T

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Target: chr4; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 307 - 351
Target Start/End: Complemental strand, 55757754 - 55757710
Alignment:
Q  307 gctgttttgattgatttttcaccataatctttgagtataatctac 351  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  55757754 gctgttttgattgatttttcaccataatctttgagtataatctac 55757710  T

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Target: chr4; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 307 - 351
Target Start/End: Complemental strand, 55758102 - 55758058
Alignment:
Q  307 gctgttttgattgatttttcaccataatctttgagtataatctac 351  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  55758102 gctgttttgattgatttttcaccataatctttgagtataatctac 55758058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 307 - 351
Target Start/End: Complemental strand, 55758794 - 55758750
Alignment:
Q  307 gctgttttgattgatttttcaccataatctttgagtataatctac 351  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  55758794 gctgttttgattgatttttcaccataatctttgagtataatctac 55758750  T

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Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 309 - 351
Target Start/End: Complemental strand, 55757926 - 55757884
Alignment:
Q  309 tgttttgattgatttttcaccataatctttgagtataatctac 351  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  55757926 tgttttgattgatttttcaccataatctttgagtataatctac 55757884  T

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Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 309 - 351
Target Start/End: Complemental strand, 55758274 - 55758232
Alignment:
Q  309 tgttttgattgatttttcaccataatctttgagtataatctac 351  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  55758274 tgttttgattgatttttcaccataatctttgagtataatctac 55758232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 309 - 351
Target Start/End: Complemental strand, 55758448 - 55758406
Alignment:
Q  309 tgttttgattgatttttcaccataatctttgagtataatctac 351  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  55758448 tgttttgattgatttttcaccataatctttgagtataatctac 55758406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 309 - 351
Target Start/End: Complemental strand, 55758622 - 55758580
Alignment:
Q  309 tgttttgattgatttttcaccataatctttgagtataatctac 351  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  55758622 tgttttgattgatttttcaccataatctttgagtataatctac 55758580  T

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Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 309 - 351
Target Start/End: Complemental strand, 55758966 - 55758924
Alignment:
Q  309 tgttttgattgatttttcaccataatctttgagtataatctac 351  Q
    |||||||||||||||||||||||| ||||||||||||||||||    
T  55758966 tgttttgattgatttttcaccatactctttgagtataatctac 55758924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 42 - 75
Target Start/End: Complemental strand, 55759425 - 55759392
Alignment:
Q  42 gaattgttcactgatgaatctattgtgttatgaa 75  Q
    ||||||||||||||||||||||||||||||||||    
T  55759425 gaattgttcactgatgaatctattgtgttatgaa 55759392  T

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Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 276 - 307
Target Start/End: Complemental strand, 55757803 - 55757772
Alignment:
Q  276 agattgttgatatttagtacttgattgtttag 307  Q
    ||||||||||||||||||||||||||||||||    
T  55757803 agattgttgatatttagtacttgattgtttag 55757772  T

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Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 276 - 307
Target Start/End: Complemental strand, 55757977 - 55757946
Alignment:
Q  276 agattgttgatatttagtacttgattgtttag 307  Q
    ||||||||||||||||||||||||||||||||    
T  55757977 agattgttgatatttagtacttgattgtttag 55757946  T

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Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 276 - 307
Target Start/End: Complemental strand, 55758151 - 55758120
Alignment:
Q  276 agattgttgatatttagtacttgattgtttag 307  Q
    ||||||||||||||||||||||||||||||||    
T  55758151 agattgttgatatttagtacttgattgtttag 55758120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 276 - 307
Target Start/End: Complemental strand, 55758325 - 55758294
Alignment:
Q  276 agattgttgatatttagtacttgattgtttag 307  Q
    ||||||||||||||||||||||||||||||||    
T  55758325 agattgttgatatttagtacttgattgtttag 55758294  T

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Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 276 - 307
Target Start/End: Complemental strand, 55758499 - 55758468
Alignment:
Q  276 agattgttgatatttagtacttgattgtttag 307  Q
    ||||||||||||||||||||||||||||||||    
T  55758499 agattgttgatatttagtacttgattgtttag 55758468  T

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Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 276 - 307
Target Start/End: Complemental strand, 55758843 - 55758812
Alignment:
Q  276 agattgttgatatttagtacttgattgtttag 307  Q
    ||||||||||||||||||||||||||||||||    
T  55758843 agattgttgatatttagtacttgattgtttag 55758812  T

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Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 276 - 307
Target Start/End: Complemental strand, 55759017 - 55758986
Alignment:
Q  276 agattgttgatatttagtacttgattgtttag 307  Q
    ||||||||||||||||||||||||||||||||    
T  55759017 agattgttgatatttagtacttgattgtttag 55758986  T

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Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 276 - 305
Target Start/End: Complemental strand, 55757629 - 55757600
Alignment:
Q  276 agattgttgatatttagtacttgattgttt 305  Q
    ||||||||||||||||||||||||||||||    
T  55757629 agattgttgatatttagtacttgattgttt 55757600  T

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Target: chr2 (Bit Score: 45; Significance: 1e-16; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 237 - 307
Target Start/End: Original strand, 38940705 - 38940779
Alignment:
Q  237 ggtcataatttgattattttcttcact---aaccttttgttta-gattgttgatatttagtacttgattgtttag 307  Q
    |||||| ||||||||||||||||||||   ||||||||||||| |||||||||||| ||||||||||||||||||    
T  38940705 ggtcatcatttgattattttcttcactcataaccttttgtttaagattgttgatatctagtacttgattgtttag 38940779  T

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Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 235 - 300
Target Start/End: Original strand, 38940552 - 38940621
Alignment:
Q  235 taggtcataatttgattattttcttcact---aaccttttgttta-gattgttgatatttagtacttgat 300  Q
    |||||||| ||||||||||||| ||||||   ||||||||||||| ||||||||||||||||||||||||    
T  38940552 taggtcattatttgattatttttttcactcataaccttttgtttaagattgttgatatttagtacttgat 38940621  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 144 - 184
Target Start/End: Original strand, 38940438 - 38940478
Alignment:
Q  144 aatttgatttttcacaagtgttcttgttgattgagttttca 184  Q
    ||||| ||||||| |||||||||||||| ||||||||||||    
T  38940438 aattttatttttctcaagtgttcttgtttattgagttttca 38940478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 314 - 350
Target Start/End: Original strand, 38940623 - 38940659
Alignment:
Q  314 tgattgatttttcaccataatctttgagtataatcta 350  Q
    ||||| |||||||||||| ||||||||||||||||||    
T  38940623 tgattaatttttcaccatgatctttgagtataatcta 38940659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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