View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17287_low_43 (Length: 346)
Name: NF17287_low_43
Description: NF17287
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17287_low_43 |
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| [»] chr2 (2 HSPs) |
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| [»] scaffold0008 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 217; Significance: 1e-119; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 12 - 346
Target Start/End: Original strand, 19327138 - 19327464
Alignment:
| Q |
12 |
agagagggaagaatgatattatgttgatgaaacttgctaaggaaaagcagtggaaacgttgtccgaattgtaagtactatgtcgctaagtccgagggttg |
111 |
Q |
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| T |
19327138 |
agagagggaagaatgatattatgttgatgaaacttgctaaggaaaagcagtggaaaaggtgtccgaattgtaagtattatgttgctaagtccgagggttg |
19327237 |
T |
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| Q |
112 |
cttgtacatgaaatgcaggtacttgtcttccatt-ctagtactcttgctactgttattattgatatttacgtgttagttatatgg-ttttgtgttatact |
209 |
Q |
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| T |
19327238 |
cttgtacatgaaatgcaggtacttgtctttcattactagt-------ctacagttattatcgatatctacgtgttagttataagggttttgtgttatact |
19327330 |
T |
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| Q |
210 |
tgttgtattatactgtatgtgtgtttgtatcggggcttcatagttttgtttggtgcgttcgatttttaaaatggagctattatgccgagggttatgttta |
309 |
Q |
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| T |
19327331 |
tgt---attatactgtatgtgtgtttgtgtatgtgcttcgtagttttgtttggtgcgttcgatttttaaaatggagctattatgctgaggattatgttta |
19327427 |
T |
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| Q |
310 |
actttatgggtgataaataattcttgatagaaaaact |
346 |
Q |
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| T |
19327428 |
actttatgggtgataaataattcttgatagaaaaact |
19327464 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 244 - 346
Target Start/End: Original strand, 19325206 - 19325308
Alignment:
| Q |
244 |
gcttcatagttttgtttggtgcgttcgatttttaaaatggagctattatgccgagggttatgtttaactttatgggtgataaataattcttgatagaaaa |
343 |
Q |
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| T |
19325206 |
gcttcaaaattttgattgttgcattcaatttttaaaatggaacttttatgataggggttaagtttaacgttattggtgataactaattgtttatagaaaa |
19325305 |
T |
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| Q |
344 |
act |
346 |
Q |
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| T |
19325306 |
act |
19325308 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0008 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: scaffold0008
Description:
Target: scaffold0008; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 24 - 113
Target Start/End: Original strand, 6646 - 6735
Alignment:
| Q |
24 |
atgatattatgttgatgaaacttgctaaggaaaagcagtggaaacgttgtccgaattgtaagtactatgtcgctaagtccgagggttgct |
113 |
Q |
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| T |
6646 |
atgatgttatgttgaagaaacatgctaaggatcagaagtggagacggtgtccgaattgtaggttttatgtcgctaagtccgagggttgct |
6735 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 24 - 113
Target Start/End: Complemental strand, 25365067 - 25364978
Alignment:
| Q |
24 |
atgatattatgttgatgaaacttgctaaggaaaagcagtggaaacgttgtccgaattgtaagtactatgtcgctaagtccgagggttgct |
113 |
Q |
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| T |
25365067 |
atgatgttatgttgatgaaacatgctaaggatcagaagtggagacagtgtccaaattgtaggttttatgtcgctaggtcggagggttgct |
25364978 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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