View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17287_low_44 (Length: 338)
Name: NF17287_low_44
Description: NF17287
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17287_low_44 |
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Alignment Details
Target: chr8 (Bit Score: 276; Significance: 1e-154; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 1 - 332
Target Start/End: Original strand, 27522165 - 27522494
Alignment:
| Q |
1 |
ttctggtgcttcctcacggtaattgccactgcaaatannnnnnnnn-actatgatcagtaactactaatgaaggacaagaattgaagtggtaaatgtgac |
99 |
Q |
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| T |
27522165 |
ttctggtgcttcctcacggtaattgccactgcaaatatattttttttactatgatcagtaactactaatgaaggacaagaattgaagtggtaaatgtgac |
27522264 |
T |
|
| Q |
100 |
ataatttaataattaataatgcatatgttatagaaatgttacccaccccatgttcaaagttggaagttgctgctgtagtaagtaatttggattaactcca |
199 |
Q |
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|||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27522265 |
ataatttaat---taataatgcataggttatagaaatgttacccaccccatgttcaaagttggaagttgctgctgtagtaagtaatttggattaactcca |
27522361 |
T |
|
| Q |
200 |
tgatggtttgggtgctcccattgtgcctgctgctgagctgcaatcttttccttctccttgatctataattatttttgaaaatgtgtcatggaaaataata |
299 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
27522362 |
tgatggtttgggtgctcccattgtgcctgctgctgagctgcaatcttttccttctccttgatctataattatttttgaaaatgtgtcatggaaaacaata |
27522461 |
T |
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| Q |
300 |
aagaatcttagccttgattaattattcatatca |
332 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
27522462 |
aagaatcttagccttgattaattattcatatca |
27522494 |
T |
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