View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17287_low_46 (Length: 327)

Name: NF17287_low_46
Description: NF17287
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17287_low_46
NF17287_low_46
[»] chr2 (3 HSPs)
chr2 (13-245)||(27363688-27363920)
chr2 (13-245)||(45400015-45400247)
chr2 (53-178)||(13031918-13032042)
[»] chr4 (2 HSPs)
chr4 (53-178)||(24630364-24630488)
chr4 (53-105)||(24665280-24665332)
[»] chr7 (1 HSPs)
chr7 (61-175)||(26841178-26841291)
[»] chr1 (4 HSPs)
chr1 (53-95)||(34521534-34521576)
chr1 (53-95)||(34534367-34534409)
chr1 (145-184)||(19329302-19329342)
chr1 (145-173)||(47646606-47646634)
[»] chr5 (1 HSPs)
chr5 (145-184)||(42729058-42729098)


Alignment Details
Target: chr2 (Bit Score: 217; Significance: 1e-119; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 13 - 245
Target Start/End: Original strand, 27363688 - 27363920
Alignment:
Q  13 aaaattgaaatatacccatgcaaaaaattttgaaaccatatttatagattatgaaaccaaacaccttacaattatatcacttaaaatcatatttaagtgt 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27363688 aaaattgaaatatacccatgcaaaaaattttgaaaccatatttatagattatgaaaccaaacaccttacaattatatcacttaaaatcatatttaagtgt 27363787  T
Q  113 tgatcgacttaaacatcacaccagttcttaaagagacgatacaaaaatacttacttttgatactacttcatgctgccatactcagatcccactttggaat 212  Q
    ||||| |||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27363788 tgatcaacttaaacatcacaccagtctttaaagagacgatacaaaaatacttacttttgatactacttcatgctgccatactcagatcccactttggaat 27363887  T
Q  213 cttgcttccttctacctgacccatattcagttt 245  Q
    ||||||||||||||||| |||||||||||||||    
T  27363888 cttgcttccttctacctaacccatattcagttt 27363920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 13 - 245
Target Start/End: Complemental strand, 45400247 - 45400015
Alignment:
Q  13 aaaattgaaatatacccatgcaaaaaattttgaaaccatatttatagattatgaaaccaaacaccttacaattatatcacttaaaatcatatttaagtgt 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45400247 aaaattgaaatatacccatgcaaaaaattttgaaaccatatttatagattatgaaaccaaacaccttacaattatatcacttaaaatcatatttaagtgt 45400148  T
Q  113 tgatcgacttaaacatcacaccagttcttaaagagacgatacaaaaatacttacttttgatactacttcatgctgccatactcagatcccactttggaat 212  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||| || ||||||||||||| |||||||||||||||||    
T  45400147 tgatcgacttaaacatcacaccagtccttaaagagacgatacaaaaatacttacttttaatactaattaatgctgccatactaagatcccactttggaat 45400048  T
Q  213 cttgcttccttctacctgacccatattcagttt 245  Q
    ||||||||||||||||| |||||||||||||||    
T  45400047 cttgcttccttctacctaacccatattcagttt 45400015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 53 - 178
Target Start/End: Original strand, 13031918 - 13032042
Alignment:
Q  53 tttatagattatgaaaccaaacaccttacaattatatcacttaaaatcatatttaagtgttgatcgacttaaacatcacaccagttcttaaagagacgat 152  Q
    ||||||| ||||||||||||||||||||||||||||||| | ||||||||| |||| |||||| || |||||| ||| ||| | |  |||   |||||||    
T  13031918 tttatagcttatgaaaccaaacaccttacaattatatcattgaaaatcata-ttaattgttgaacggcttaaatatcgcactaatctttatgaagacgat 13032016  T
Q  153 acaaaaatacttacttttgatactac 178  Q
    |||||||||||||||| |||||||||    
T  13032017 acaaaaatacttacttatgatactac 13032042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 46; Significance: 3e-17; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 53 - 178
Target Start/End: Original strand, 24630364 - 24630488
Alignment:
Q  53 tttatagattatgaaaccaaacaccttacaattatatcacttaaaatcatatttaagtgttgatcgacttaaacatcacaccagttcttaaagagacgat 152  Q
    ||||||| |||||||| |||||||||||||||| ||||||||||||| ||||  || |||||| |||||| || ||||| | | | |||   |||| |||    
T  24630364 tttatagcttatgaaatcaaacaccttacaattttatcacttaaaattatata-aattgttgaacgactttaatatcacgctactccttgtggagatgat 24630462  T
Q  153 acaaaaatacttacttttgatactac 178  Q
    ||||||||| ||||||||||||||||    
T  24630463 acaaaaatatttacttttgatactac 24630488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 53 - 105
Target Start/End: Original strand, 24665280 - 24665332
Alignment:
Q  53 tttatagattatgaaaccaaacaccttacaattatatcacttaaaatcatatt 105  Q
    ||||||| ||||||||||||||||||||||||| |||||||||||||||||||    
T  24665280 tttatagcttatgaaaccaaacaccttacaattttatcacttaaaatcatatt 24665332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 61 - 175
Target Start/End: Original strand, 26841178 - 26841291
Alignment:
Q  61 ttatgaaaccaaacaccttacaattatatcacttaaaatcatatttaagtgttgatcgacttaaacatcacaccagttcttaaagagacgatacaaaaat 160  Q
    |||||||| |||||||||||||||||| ||||||||||||||| | || ||||||  || ||||| ||| ||| ||| |||   || | |||||||||||    
T  26841178 ttatgaaatcaaacaccttacaattatctcacttaaaatcata-tcaattgttgaatgaattaaatatcgcactagtccttgtggatatgatacaaaaat 26841276  T
Q  161 acttacttttgatac 175  Q
    |||||||||||||||    
T  26841277 acttacttttgatac 26841291  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 53 - 95
Target Start/End: Original strand, 34521534 - 34521576
Alignment:
Q  53 tttatagattatgaaaccaaacaccttacaattatatcactta 95  Q
    ||||||| ||||||||||||||||||||||||| |||||||||    
T  34521534 tttatagcttatgaaaccaaacaccttacaattttatcactta 34521576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 53 - 95
Target Start/End: Original strand, 34534367 - 34534409
Alignment:
Q  53 tttatagattatgaaaccaaacaccttacaattatatcactta 95  Q
    ||||||| ||||||||||||||||||||||||| || ||||||    
T  34534367 tttatagcttatgaaaccaaacaccttacaattttaccactta 34534409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 145 - 184
Target Start/End: Complemental strand, 19329342 - 19329302
Alignment:
Q  145 gagacgata-caaaaatacttacttttgatactacttcatg 184  Q
    ||||||||| ||||||||||||||||||||||||| |||||    
T  19329342 gagacgatagcaaaaatacttacttttgatactacatcatg 19329302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 145 - 173
Target Start/End: Complemental strand, 47646634 - 47646606
Alignment:
Q  145 gagacgatacaaaaatacttacttttgat 173  Q
    |||||||||||||||||||||||||||||    
T  47646634 gagacgatacaaaaatacttacttttgat 47646606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 145 - 184
Target Start/End: Complemental strand, 42729098 - 42729058
Alignment:
Q  145 gagacgata-caaaaatacttacttttgatactacttcatg 184  Q
    ||||||||| ||||||||||||||||||||||||| |||||    
T  42729098 gagacgataacaaaaatacttacttttgatactacatcatg 42729058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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