View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17287_low_48 (Length: 321)
Name: NF17287_low_48
Description: NF17287
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17287_low_48 |
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Alignment Details
Target: chr7 (Bit Score: 282; Significance: 1e-158; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 1 - 306
Target Start/End: Original strand, 5938528 - 5938833
Alignment:
| Q |
1 |
tcggtgtcagacaccgatgcgtgtccgacaccggaacacacgtaatatgaggagtttctatgcttcattcaaattcataaaaatcaaataaaagaatcaa |
100 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||| ||||| |||||||||||||||||||||||||||||||||| |
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| T |
5938528 |
tcggtgtcagacaccgatgcgtgtccgacaccggaacacacctaatctgaggagtttctctgctttattcaaattcataaaaatcaaataaaagaatcaa |
5938627 |
T |
|
| Q |
101 |
aagtctgtttatttttaaacaaccctttcagtttttactgtgtatgtgagtggctgaaaacaggaaacactagaagcaaacaaatactaaaatatttaag |
200 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
5938628 |
aagtctgtttatttttaaacaaccctttcagtttttactgtgtatgtgagtggctgaaaacaggaaacactagaagcaaacaaatactaaaatgtttaag |
5938727 |
T |
|
| Q |
201 |
gtcttaaattagaacttatgcaagatattttgataaactcattgaaaaatttagtgcatacctcttcctcagattttgcttttgcatttgaatttgaact |
300 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
5938728 |
gtcttaaattagaacttatgcaagatattttgataaactcattgaaaaatttagtgcatacctcttcctcagattttgtttttgcatttgaatttgaact |
5938827 |
T |
|
| Q |
301 |
aggtga |
306 |
Q |
| |
|
|||||| |
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|
| T |
5938828 |
aggtga |
5938833 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 7133281 - 7133228
Alignment:
| Q |
1 |
tcggtgtcagacaccgatgcgtgtccgacaccggaacacacgtaatatgaggag |
54 |
Q |
| |
|
|||||||| |||||||| ||||||||||||| || |||||| |||| ||||||| |
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|
| T |
7133281 |
tcggtgtcggacaccgacgcgtgtccgacactgggacacacctaatctgaggag |
7133228 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 14513177 - 14513132
Alignment:
| Q |
1 |
tcggtgtcagacaccgatgcgtgtccgacaccggaacacacgtaat |
46 |
Q |
| |
|
||||||||||||||||| || |||||||||||||||||||| |||| |
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| T |
14513177 |
tcggtgtcagacaccgacgcatgtccgacaccggaacacacctaat |
14513132 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 3 - 55
Target Start/End: Complemental strand, 31243543 - 31243491
Alignment:
| Q |
3 |
ggtgtcagacaccgatgcgtgtccgacaccggaacacacgtaatatgaggagt |
55 |
Q |
| |
|
|||||| ||||||||||||||| ||||||| | |||||| ||||||||||||| |
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|
| T |
31243543 |
ggtgtcggacaccgatgcgtgttcgacaccaggacacacctaatatgaggagt |
31243491 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 10133759 - 10133811
Alignment:
| Q |
1 |
tcggtgtcagacaccgatgcgtgtccgacaccggaacacacgtaatatgagga |
53 |
Q |
| |
|
|||||||||||||| || |||||||||||||| | |||||| |||| |||||| |
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|
| T |
10133759 |
tcggtgtcagacactgacgcgtgtccgacaccaggacacacctaatctgagga |
10133811 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 3 - 46
Target Start/End: Original strand, 2419919 - 2419962
Alignment:
| Q |
3 |
ggtgtcagacaccgatgcgtgtccgacaccggaacacacgtaat |
46 |
Q |
| |
|
||||||||||||||||||||||||||| |||| |||||| |||| |
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|
| T |
2419919 |
ggtgtcagacaccgatgcgtgtccgaccccgggacacacctaat |
2419962 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 4 - 68
Target Start/End: Complemental strand, 20157350 - 20157286
Alignment:
| Q |
4 |
gtgtcagacaccgatgcgtgtccgacaccggaacacacgtaatatgaggagtttctatgcttcat |
68 |
Q |
| |
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||||| |||||||| ||||||||||||||| |||||| |||| |||||||| || |||||||| |
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| T |
20157350 |
gtgtccgacaccgacgcgtgtccgacaccgagacacacctaatttgaggagtatccgtgcttcat |
20157286 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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