View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17287_low_49 (Length: 315)
Name: NF17287_low_49
Description: NF17287
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17287_low_49 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 222; Significance: 1e-122; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 16 - 315
Target Start/End: Complemental strand, 45400678 - 45400386
Alignment:
| Q |
16 |
aatatttttcccatattttttattcatcaatgacaactatttatcccgtgatttttgtatcattaatgaatatatgtgatgtgattctttcaannnnnnn |
115 |
Q |
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| T |
45400678 |
aatatttttcccatattttttattcatcaatgacaactatttatcccgtgatttttgtatcaataatgaatatatgtgatgtgattctttcaattttttt |
45400579 |
T |
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| Q |
116 |
cataacaaaattttatcttgtgcttttttaagtaaaacataatcgataattagttggagaggt-gagaaaggatcagtcatcagatgaatatgattaata |
214 |
Q |
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| T |
45400578 |
cataacaaatttttatcttgtgc-tttttaagtaaaacataatcgataattagttggagaggtggagaaagg-------atcaaatgaatatgattaata |
45400487 |
T |
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| Q |
215 |
gaaatggacacacttctatctctttgtaggaattctaatatcgagcgtatgaggtaagaacaaagattgaaaagagattttggtgaaaatgttcaactaa |
314 |
Q |
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| T |
45400486 |
gaaatggacacacttatatctctttgtaggaattctaatatcgagcgtatgaggtaagaacaaagattgaaaagagattttggtgaaaatgttcaactaa |
45400387 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 11 - 282
Target Start/End: Original strand, 27363148 - 27363411
Alignment:
| Q |
11 |
cgaagaatatttttcccatattttttattcatcaatgacaactatttatcccgtgatttttgtatcattaatgaatatatgtgatgtgattctttcaann |
110 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||| |
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| T |
27363148 |
cgaaaaatatttttcccatattttttattcatcaatgacaactatttatcccgtgatttttgtatcaataatgaatatat-tgatgtgattctttcaatt |
27363246 |
T |
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| Q |
111 |
nnnnncataacaaaattttatcttgtgcttttttaagtaaaacataatcgataattagttggagaggtgagaaaggatcagtcatcagatgaatatgatt |
210 |
Q |
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| T |
27363247 |
tttttcataacaaatttttatcttgtgcttttttaagtaaaacataatcgataattagttggagagatgagaaagg-------atcagatgaatatgatt |
27363339 |
T |
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| Q |
211 |
aatagaaatggacacacttctatctctttgtaggaattctaatatcgagcgtatgaggtaagaacaaagatt |
282 |
Q |
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| T |
27363340 |
aatagaaatggacacacttctatctctttgtaggaattctaatatcgagcatatgaggtaagaacaaagatt |
27363411 |
T |
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