View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17287_low_5 (Length: 680)
Name: NF17287_low_5
Description: NF17287
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17287_low_5 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 105; Significance: 4e-52; HSPs: 9)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 328 - 573
Target Start/End: Original strand, 11195354 - 11195599
Alignment:
| Q |
328 |
atattaagcaagttgcaaagaggaaaatcatgaatcttaacatatatacagaactcgtatacatctgtaaggacaccgaacaaattatcatatagttgac |
427 |
Q |
| |
|
||||||||||||||||||||||| ||| || ||||||||||||||||||||| || ||||||| |||||| || ||| ||||||||||||||||||| |
|
|
| T |
11195354 |
atattaagcaagttgcaaagagggaaaagattaatcttaacatatatacagaagtcatatacatttgtaagcacgttgaataaattatcatatagttgac |
11195453 |
T |
|
| Q |
428 |
attgtcaccataaacttgaaatttaacaatacaatttgaatgaagttttaacnnnnnnncaaaaagtcaacaattatagaagaagctagcccggtgatgt |
527 |
Q |
| |
|
||||||||| |||||||||||||| |||||||||||||||||||||||||| | |||||||||||| | ||| |||||||| ||||||| |
|
|
| T |
11195454 |
attgtcaccttaaacttgaaattttacaatacaatttgaatgaagttttaatctttttttacaaagtcaacaatgagctgagaggctagcccagtgatgt |
11195553 |
T |
|
| Q |
528 |
tagatgttgcagctgcatacactatctggaaagtatattttagtaa |
573 |
Q |
| |
|
||| |||||||||||| |||||||| ||||| |||||||||||| |
|
|
| T |
11195554 |
tagttgttgcagctgcgtacactataatgaaagaatattttagtaa |
11195599 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 97; E-Value: 3e-47
Query Start/End: Original strand, 328 - 573
Target Start/End: Original strand, 11154907 - 11155152
Alignment:
| Q |
328 |
atattaagcaagttgcaaagaggaaaatcatgaatcttaacatatatacagaactcgtatacatctgtaaggacaccgaacaaattatcatatagttgac |
427 |
Q |
| |
|
||||||||||||||||||||||| ||| || || ||| |||||||||||||| || ||||||| | |||| || ||||||||||||||||||||||| |
|
|
| T |
11154907 |
atattaagcaagttgcaaagagggaaaagattaaccttgacatatatacagaagtcatatacatttataagcacgttgaacaaattatcatatagttgac |
11155006 |
T |
|
| Q |
428 |
attgtcaccataaacttgaaatttaacaatacaatttgaatgaagttttaacnnnnnnncaaaaagtcaacaattatagaagaagctagcccggtgatgt |
527 |
Q |
| |
|
||||||||| |||||||||||||| |||||||||||||||||||||||||| | |||||||||||| | ||| |||||||||||||||| |
|
|
| T |
11155007 |
attgtcaccttaaacttgaaattttacaatacaatttgaatgaagttttaatctttttttacaaagtcaacaatgagttgagaggctagcccggtgatgt |
11155106 |
T |
|
| Q |
528 |
tagatgttgcagctgcatacactatctggaaagtatattttagtaa |
573 |
Q |
| |
|
||| |||||||||||||| ||||| ||||| |||||||||||| |
|
|
| T |
11155107 |
tagttgttgcagctgcatggactataatgaaagaatattttagtaa |
11155152 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 438 - 576
Target Start/End: Complemental strand, 11246591 - 11246449
Alignment:
| Q |
438 |
taaacttgaaatttaacaatacaatttgaatgaagttttaacnnnnnnn----caaaaagtcaacaattatagaagaagctagcccggtgatgttagatg |
533 |
Q |
| |
|
|||||| ||||||| ||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||| ||||||||| || |
|
|
| T |
11246591 |
taaactagaaatttcacaatacaatttgaatgaagttttaacttttttttcttcataaagtcaacaattatagaagaagctagcccgatgatgttagttg |
11246492 |
T |
|
| Q |
534 |
ttgcagctgcatacactatctggaaagtatattttagtaataa |
576 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||| |||| |
|
|
| T |
11246491 |
ttgcagctgcaaacactatctggaaagtatattttagtgataa |
11246449 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 412 - 657
Target Start/End: Original strand, 11208096 - 11208337
Alignment:
| Q |
412 |
ttatcatatagttgacattgtcaccataaacttgaaatttaacaatacaatttgaatgaagttttaacnnnnnnncaaaaagtcaacaattatagaagaa |
511 |
Q |
| |
|
|||| ||||||||||||||||| | |||| |||||||| ||| |||||||||||||||| |||||| | ||||||||||||| ||||||| |
|
|
| T |
11208096 |
ttattatatagttgacattgtcgct-taaatatgaaatttcacagtacaatttgaatgaaggtttaacttttt---ataaagtcaacaattccagaagaa |
11208191 |
T |
|
| Q |
512 |
gctagcccggtgatgttagatgttgcagctgcatacactatctggaaagtatattttagtaataacggtaaccaacgatttcnnnnnnngtttactgcat |
611 |
Q |
| |
|
||| ||||||||||| | ||||||||||||||||||| |||||||| |||||| |||||| |||||||||||||| || |||| || |
|
|
| T |
11208192 |
actatcccggtgatgtcacctgttgcagctgcatacactgtctggaaacaatatttggctaataatggtaaccaacgattcttctttttcttcactggat |
11208291 |
T |
|
| Q |
612 |
aactaaccatagtaccttcttgcagaccatgctcctcatcctttat |
657 |
Q |
| |
|
| ||||||||||||||||| || ||||||| ||||||||||||| |
|
|
| T |
11208292 |
gcccaaccatagtaccttcttccacaccatgcccctcatcctttat |
11208337 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 532 - 591
Target Start/End: Complemental strand, 11316048 - 11315989
Alignment:
| Q |
532 |
tgttgcagctgcatacactatctggaaagtatattttagtaataacggtaaccaacgatt |
591 |
Q |
| |
|
|||||||||| |||||||| |||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
11316048 |
tgttgcagctatatacactacctggaaagtatattttagtaataacggtaaccaatgatt |
11315989 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 412 - 591
Target Start/End: Original strand, 11273084 - 11273259
Alignment:
| Q |
412 |
ttatcatatagttgacattgtcaccataaacttgaaatttaacaatacaatttgaatgaagttttaacnnnnnnncaaaaagtcaacaattatagaagaa |
511 |
Q |
| |
|
|||| ||||||||||||||||||| |||| ||||||||| || |||||| ||||||||| |||||| | |||||||||||||| ||||||| |
|
|
| T |
11273084 |
ttattatatagttgacattgtcact-taaatttgaaatttcaccgtacaatatgaatgaaggtttaacttttt---ataaagtcaacaattacagaagaa |
11273179 |
T |
|
| Q |
512 |
gctagcccggtgatgttagatgttgcagctgcatacactatctggaaagtatattttagtaataacggtaaccaacgatt |
591 |
Q |
| |
|
||| |||||||||| | ||||| | ||||||||||| ||||||| ||||||| |||||| | ||||||| |||| |
|
|
| T |
11273180 |
actattccggtgatgtcacctgttgtaactgcatacactgactggaaacaatattttgctaataatgataaccaatgatt |
11273259 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 424 - 591
Target Start/End: Original strand, 11169286 - 11169449
Alignment:
| Q |
424 |
tgacattgtcaccataaacttgaaatttaacaatacaatttgaatgaagttttaacnnnnnnncaaaaagtcaacaattatagaagaagctagcccggtg |
523 |
Q |
| |
|
|||||||||||| |||| ||||||||| || |||||||||||||||| |||||| | |||||||| |||| ||||||| ||| |||||| |
|
|
| T |
11169286 |
tgacattgtcact-taaatttgaaatttcacggtacaatttgaatgaaggtttaacttttt---ataaagtcaatcattacagaagaaactattccggtg |
11169381 |
T |
|
| Q |
524 |
atgttagatgttgcagctgcatacactatctggaaagtatattttagtaataacggtaaccaacgatt |
591 |
Q |
| |
|
|||| | ||||| ||||||||||||| ||| |||| |||||| |||||| |||||||||||||| |
|
|
| T |
11169382 |
atgtcacctgttgtagctgcatacactgtctcgaaacaatatttggctaataatggtaaccaacgatt |
11169449 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 194 - 236
Target Start/End: Complemental strand, 11212961 - 11212919
Alignment:
| Q |
194 |
atgagtaatcggtgaaaatgctcgtttgatgtggttttcgatg |
236 |
Q |
| |
|
||||||||| ||| ||||||| ||||||||||||||||||||| |
|
|
| T |
11212961 |
atgagtaattggttaaaatgcacgtttgatgtggttttcgatg |
11212919 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 194 - 236
Target Start/End: Complemental strand, 11279830 - 11279788
Alignment:
| Q |
194 |
atgagtaatcggtgaaaatgctcgtttgatgtggttttcgatg |
236 |
Q |
| |
|
||||||||| ||| ||||||| ||||||||||||||||||||| |
|
|
| T |
11279830 |
atgagtaattggttaaaatgcacgtttgatgtggttttcgatg |
11279788 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University