View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17287_low_50 (Length: 312)

Name: NF17287_low_50
Description: NF17287
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17287_low_50
NF17287_low_50
[»] chr7 (6 HSPs)
chr7 (76-312)||(6102803-6103041)
chr7 (116-243)||(4257433-4257560)
chr7 (260-312)||(41712378-41712430)
chr7 (175-249)||(42513138-42513212)
chr7 (116-249)||(30456248-30456380)
chr7 (260-312)||(49017213-49017265)
[»] chr4 (7 HSPs)
chr4 (21-312)||(24733455-24733754)
chr4 (31-312)||(12637867-12638148)
chr4 (22-105)||(24736058-24736141)
chr4 (111-312)||(36050600-36050801)
chr4 (111-312)||(36053859-36054060)
chr4 (132-244)||(45735973-45736086)
chr4 (116-183)||(55322485-55322552)
[»] chr2 (6 HSPs)
chr2 (111-308)||(45327420-45327618)
chr2 (29-245)||(28860610-28860823)
chr2 (260-312)||(31211899-31211951)
chr2 (260-312)||(31193263-31193315)
chr2 (275-312)||(40400921-40400958)
chr2 (116-217)||(40401006-40401107)
[»] chr1 (4 HSPs)
chr1 (21-245)||(16544230-16544451)
chr1 (21-212)||(25541200-25541394)
chr1 (111-249)||(23405551-23405689)
chr1 (196-312)||(18583898-18584015)
[»] chr3 (2 HSPs)
chr3 (116-213)||(14029259-14029356)
chr3 (196-249)||(36326511-36326564)
[»] chr8 (5 HSPs)
chr8 (260-312)||(11825086-11825138)
chr8 (111-249)||(44765210-44765348)
chr8 (118-249)||(44761910-44762041)
chr8 (260-305)||(23090090-23090135)
chr8 (202-249)||(14276637-14276685)
[»] chr5 (4 HSPs)
chr5 (196-312)||(24108719-24108836)
chr5 (175-249)||(8123528-8123602)
chr5 (260-312)||(671548-671600)
chr5 (111-149)||(41709470-41709508)
[»] chr6 (2 HSPs)
chr6 (175-249)||(4834719-4834793)
chr6 (175-249)||(33242848-33242922)


Alignment Details
Target: chr7 (Bit Score: 163; Significance: 5e-87; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 163; E-Value: 5e-87
Query Start/End: Original strand, 76 - 312
Target Start/End: Original strand, 6102803 - 6103041
Alignment:
Q  76 tctagtaaagtaataacgattcaactagttactagaagggtcttttaggcatattctattagatagttactaagaagcgctattatgtagccattttagt 175  Q
    ||||||||||||||||||| |||||||||||| ||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  6102803 tctagtaaagtaataacgactcaactagttaccagaagagtcttttaggcatattctattaggtagttactaagaagcgctattatgtagccattttagt 6102902  T
Q  176 tatcttataatgagcatcctcaagcctatataagcattgtatctttcatgattagaatcaatgaaaaatataataaa--nnnnnnncttttatctctaat 273  Q
    ||||||||||| | ||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||         |||||||||||| |    
T  6102903 tatcttataataaacatccccaaacctatataagcattgtatctttcatgattagaatcaatgaaaaatataatgaattttttttgcttttatctctagt 6103002  T
Q  274 tttctctcttaatttatggagtgtgatccctactcgaat 312  Q
    ||||||||||||||||||||||||||| |||||||||||    
T  6103003 tttctctcttaatttatggagtgtgattcctactcgaat 6103041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 116 - 243
Target Start/End: Complemental strand, 4257560 - 4257433
Alignment:
Q  116 tcttttaggcatattctattagatagttactaagaagcgctattatgtagccattttagttatcttataatgagcatcctcaagcctatataagcattgt 215  Q
    |||||||  ||||||||||||| ||||||||||||||||||||| ||||||  || |||||||||||||||||| |||| |||||||||| ||| |||||    
T  4257560 tcttttaaacatattctattagttagttactaagaagcgctattgtgtagctgttgtagttatcttataatgaggatccacaagcctataaaagtattgt 4257461  T
Q  216 atctttcatgattagaatcaatgaaaaa 243  Q
    ||   ||||||||| |||||||||||||    
T  4257460 atgcctcatgattaaaatcaatgaaaaa 4257433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 260 - 312
Target Start/End: Original strand, 41712378 - 41712430
Alignment:
Q  260 cttttatctctaattttctctcttaatttatggagtgtgatccctactcgaat 312  Q
    ||||| |||||| |||||||||||||||| ||||||||||||| |||||||||    
T  41712378 cttttgtctctagttttctctcttaatttttggagtgtgatccttactcgaat 41712430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 175 - 249
Target Start/End: Complemental strand, 42513212 - 42513138
Alignment:
Q  175 ttatcttataatgagcatcctcaagcctatataagcattgtatctttcatgattagaatcaatgaaaaatataat 249  Q
    ||||||||| ||||| || | |||| |||||||||||||||||  || || || |||||||||||||||||||||    
T  42513212 ttatcttattatgagtatgcacaagtctatataagcattgtatgctttattatgagaatcaatgaaaaatataat 42513138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 116 - 249
Target Start/End: Original strand, 30456248 - 30456380
Alignment:
Q  116 tcttttaggcatattctattagatagttactaagaagcgctattatgtagccattttagttatcttataatgagcatcctcaagcctatataagcattgt 215  Q
    ||||||| |||||||||||||| | |||| | || || |||||| |||||   || |||||||||||| ||||| || |  ||| ||||||||||||| |    
T  30456248 tcttttaagcatattctattagtttgttattgagcagtgctattgtgtagttgttgtagttatcttattatgagtatgc-aaagtctatataagcattat 30456346  T
Q  216 atctttcatgattagaatcaatgaaaaatataat 249  Q
    ||   | ||||||||||  |||||||||||||||    
T  30456347 atgccttatgattagaacgaatgaaaaatataat 30456380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 260 - 312
Target Start/End: Original strand, 49017213 - 49017265
Alignment:
Q  260 cttttatctctaattttctctct-taatttatggagtgtgatccctactcgaat 312  Q
    |||||||||||| ||| |||||| ||||||||||||||||||||||| ||||||    
T  49017213 cttttatctctagttt-ctctctctaatttatggagtgtgatccctattcgaat 49017265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 153; Significance: 4e-81; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 21 - 312
Target Start/End: Original strand, 24733455 - 24733754
Alignment:
Q  21 gaagtcccaaagagcgtataatcccgaagagagattcatgggtgactcattttattctagtaaagtaataacgattcaactagttactagaagggtcttt 120  Q
    |||||| ||||||||||| |||| ||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||| |||    
T  24733455 gaagtcgcaaagagcgtacaatctcgaagtgagattcatgggtgactcattttattctagtaaagtaataacgactcaactagtttctagaagggtattt 24733554  T
Q  121 taggcatattctattagatagttactaagaagcgctattatgtagccattttagttatctta-------taatgagcatcctcaagcctatataagcatt 213  Q
    ||||| ||||||||||| |||||||||||||||||||||||||||||||| |||||||||||       |||||||||||| || |||||||||||||||    
T  24733555 taggcctattctattagttagttactaagaagcgctattatgtagccattgtagttatcttataatgactaatgagcatccacatgcctatataagcatt 24733654  T
Q  214 gtatctttcatgattagaatcaatgaaaaatataat-aaannnnnnncttttatctctaattttctctcttaatttatggagtgtgatccctactcgaat 312  Q
    |||| ||||||||||||||  ||||||||||||||| ||        ||||||| |||| |||||||||||||| | |  ||||||||||||||| ||||    
T  24733655 gtatgtttcatgattagaaggaatgaaaaatataatgaatttcctttcttttatatctagttttctctcttaatatctaaagtgtgatccctacttgaat 24733754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 31 - 312
Target Start/End: Original strand, 12637867 - 12638148
Alignment:
Q  31 agagcgtataatcccgaagagagattcatgggtgact-cattttattctagtaaagtaataacgattcaactagttactagaagggtcttttaggcatat 129  Q
    |||||||| || |||||||| || ||||||||||||| ||| |||||||||||||  ||||| || ||  |||| | |||| ||| ||||||| ||||||    
T  12637867 agagcgtacaagcccgaagaaaggttcatgggtgacttcatcttattctagtaaaagaataatgactcggctagattctaggaggatcttttaagcatat 12637966  T
Q  130 tctattagatagttactaagaagcgctattatgtagccattttagttatcttataatgagcatcctcaagcctatataagcattgtatctttcatgatta 229  Q
    |||||||| |||| |||||||||||||||| ||||||| || |||||||||||||||||| |||| ||||| |||| |||||||||||   ||||||| |    
T  12637967 tctattagttagtgactaagaagcgctattgtgtagccgttgtagttatcttataatgaggatccacaagcttataaaagcattgtatgcctcatgataa 12638066  T
Q  230 gaatcaatgaaaaatataataaannnnnnncttttatctctaattttctctcttaatttatggagtgtgatccctactcgaat 312  Q
     ||||||||||||||| |  ||        ||||||| ||||  ||||||||||||||| ||||||| ||| |||||||||||    
T  12638067 taatcaatgaaaaata-acaaatttcctttcttttatatctagatttctctcttaatttctggagtgcgatacctactcgaat 12638148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 22 - 105
Target Start/End: Original strand, 24736058 - 24736141
Alignment:
Q  22 aagtcccaaagagcgtataatcccgaagagagattcatgggtgactcattttattctagtaaagtaataacgattcaactagtt 105  Q
    |||||||||||||| || |||||||||  ||||||||| |||||||||||||||| ||||||||||||||||| ||||||||||    
T  24736058 aagtcccaaagagcatacaatcccgaaaggagattcataggtgactcattttattttagtaaagtaataacgactcaactagtt 24736141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 111 - 312
Target Start/End: Original strand, 36050600 - 36050801
Alignment:
Q  111 aagggtcttttaggcatattctattagatagttactaagaagcgctattatgtagccattttagttatcttataatgagcatcctcaagcctatataagc 210  Q
    |||| |||||||||||||||||||||| ||||||||||| |  ||||||  |||||| || |||||| ||||  ||| | || | |||| |||||||| |    
T  36050600 aaggatcttttaggcatattctattagttagttactaagcaatgctattgcgtagccgttgtagttagcttactatgtgtatgcacaagtctatataaac 36050699  T
Q  211 attgtatctttcatgattagaatcaatgaaaaatataataaannnnnnn-cttttatctctaattttctctcttaatttatggagtgtgatccctactcg 309  Q
    |||||||   | || || ||    ||||||||||||||| ||        |||||||||||| |||||||| ||||||| ||||||||||||||||||||    
T  36050700 attgtatgccttattatgaggga-aatgaaaaatataatgaatttcttttcttttatctctagttttctcttttaatttttggagtgtgatccctactcg 36050798  T
Q  310 aat 312  Q
    |||    
T  36050799 aat 36050801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 111 - 312
Target Start/End: Original strand, 36053859 - 36054060
Alignment:
Q  111 aagggtcttttaggcatattctattagatagttactaagaagcgctattatgtagccattttagttatcttataatgagcatcctcaagcctatataagc 210  Q
    |||| |||||||||||||||||||||| ||||||||||| |  ||||||  |||||| || |||||| ||||  ||| | || | |||| |||||||| |    
T  36053859 aaggatcttttaggcatattctattagttagttactaagcaatgctattgcgtagccgttgtagttagcttactatgtgtatgcacaagtctatataaac 36053958  T
Q  211 attgtatctttcatgattagaatcaatgaaaaatataataaannnnnnn-cttttatctctaattttctctcttaatttatggagtgtgatccctactcg 309  Q
    |||||||   | || || ||    ||||||||||||||| ||        |||||||||||| |||||||| ||||||| ||||||||||||||||||||    
T  36053959 attgtatgccttattatgaggga-aatgaaaaatataatgaatttcttttcttttatctctagttttctcttttaatttttggagtgtgatccctactcg 36054057  T
Q  310 aat 312  Q
    |||    
T  36054058 aat 36054060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 132 - 244
Target Start/End: Original strand, 45735973 - 45736086
Alignment:
Q  132 tattagatagttactaagaagcgctattatgtagccattttagttatcttataatgagcatcctcaagcctatataagcattgtatctttcat-gattag 230  Q
    |||||| ||||||||||||||  ||||| |||| || || ||||||| |||| |||||||| | |||  ||| |||||||||||||   |||| ||||||    
T  45735973 tattagttagttactaagaagttctattgtgtaaccgttgtagttatattattatgagcattcacaaatctacataagcattgtatgcctcatagattag 45736072  T
Q  231 aatcaatgaaaaat 244  Q
    ||||||||||||||    
T  45736073 aatcaatgaaaaat 45736086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 116 - 183
Target Start/End: Complemental strand, 55322552 - 55322485
Alignment:
Q  116 tcttttaggcatattctattagatagttactaagaagcgctattatgtagccattttagttatcttat 183  Q
    |||||||||||||||||||||| |||||| |||| || |||||| |||||  ||| ||||||||||||    
T  55322552 tcttttaggcatattctattagttagttattaagcagtgctattgtgtagttattgtagttatcttat 55322485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 74; Significance: 6e-34; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 111 - 308
Target Start/End: Complemental strand, 45327618 - 45327420
Alignment:
Q  111 aagggtcttttaggcatattctattagatagttactaagaagcgctattatgtagccattttagttatcttataatgagcatcctcaagcctatataagc 210  Q
    |||| |||||||||||||||||||||| ||||||||||| |   ||||| ||||||| || |||||||||||  ||| | || | |||| ||||||||||    
T  45327618 aaggatcttttaggcatattctattagttagttactaagcaatactattgtgtagccgttgtagttatcttactatgtgtatgcacaagtctatataagc 45327519  T
Q  211 attgtatctttcatgattagaatcaatgaaaaatataataaa-nnnnnnncttttatctctaattttctctcttaatttatggagtgtgatccctactc 308  Q
    ||||||| | | || || ||||  ||||||||||||||||||        ||||||||||||||||||||||||||||| |||||||||||||||||||    
T  45327518 attgtatgtcttattatgagaaaaaatgaaaaatataataaatttcttttcttttatctctaattttctctcttaatttctggagtgtgatccctactc 45327420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 29 - 245
Target Start/End: Original strand, 28860610 - 28860823
Alignment:
Q  29 aaagagcgtataatcccgaagagagattcatgggtgactcattttattctagtaaagtaataacgattcaactagttactagaagggtcttttaggcata 128  Q
    |||||||||| || ||||||||||| | ||||| |||||||| |||||||||||||  ||||| || ||| ||||||  ||||||| |||||||||||||    
T  28860610 aaagagcgtacaagcccgaagagaggtacatgg-tgactcatcttattctagtaaaa-aataatgactcatctagtttttagaaggatcttttaggcata 28860707  T
Q  129 ttctattagatagttactaagaagcgctattatgtagccattttagttatcttataatgagcatcctcaagcctatataagcattgtatctttcatgatt 228  Q
    || |||||| ||||||||||||| || |||| |   ||| || ||| |||||||||||||| |||| ||| |||||| |||||  | ||   ||||||||    
T  28860708 ttatattagttagttactaagaaacgttattgtacggccgttgtag-tatcttataatgaggatccacaaacctataaaagcaccgaatgcctcatgatt 28860806  T
Q  229 agaatcaatgaaaaata 245  Q
    | |||||||||||||||    
T  28860807 aaaatcaatgaaaaata 28860823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 260 - 312
Target Start/End: Original strand, 31211899 - 31211951
Alignment:
Q  260 cttttatctctaattttctctcttaatttatggagtgtgatccctactcgaat 312  Q
    |||||||||||| |||||||||||||||| |||||||||||||||||||||||    
T  31211899 cttttatctctagttttctctcttaatttctggagtgtgatccctactcgaat 31211951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 260 - 312
Target Start/End: Original strand, 31193263 - 31193315
Alignment:
Q  260 cttttatctctaattttctctcttaatttatggagtgtgatccctactcgaat 312  Q
    |||| ||||||| |||||||||||||||| | |||||||||||||||||||||    
T  31193263 ctttcatctctagttttctctcttaatttctagagtgtgatccctactcgaat 31193315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 275 - 312
Target Start/End: Complemental strand, 40400958 - 40400921
Alignment:
Q  275 ttctctcttaatttatggagtgtgatccctactcgaat 312  Q
    |||||||| ||||| |||||||||||||||||||||||    
T  40400958 ttctctctaaatttctggagtgtgatccctactcgaat 40400921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 116 - 217
Target Start/End: Complemental strand, 40401107 - 40401006
Alignment:
Q  116 tcttttaggcatattctattagatagttactaagaagcgctattatgtagccattttagttatcttataatgagcatcctcaagcctatataagcattgt 215  Q
    ||||||| ||||||||| |||| |||||| |||| |  |||||||| ||| | || |||||||||||| ||||| || | |||| |||| ||||||| ||    
T  40401107 tcttttaagcatattctcttagttagttattaagcactgctattatatagtcgttgtagttatcttatcatgagtatgcacaagtctatttaagcatagt 40401008  T
Q  216 at 217  Q
    ||    
T  40401007 at 40401006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 67; Significance: 9e-30; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 21 - 245
Target Start/End: Original strand, 16544230 - 16544451
Alignment:
Q  21 gaagtcccaaagagcgtataatcccgaagagagattcatgggtgactcattttattctagtaaagtaataacgattcaactagttactagaagggtcttt 120  Q
    |||||| |||||||| || ||  | |||||||| |||||  ||||||| | | |||||||||||  || ||||| |||| |||||  ||||||| |||||    
T  16544230 gaagtcacaaagagcatacaagtctgaagagaggttcataagtgactcgtctcattctagtaaaagaagaacgactcaagtagtttttagaaggatcttt 16544329  T
Q  121 taggcatattctattagatagttactaagaagcgctattatgtagccattttagttatcttataatgagcatcctcaagcctatataagcattgtatctt 220  Q
    |||||||| |||| ||| ||||||||||||||||||||||||| |||||| |||||||||||  ||||  |||| ||||| |||| |||| |||||   |    
T  16544330 taggcatactctactagttagttactaagaagcgctattatgtggccattgtagttatcttacgatgaagatccacaagcatataaaagccttgta---t 16544426  T
Q  221 tcatgattagaatcaatgaaaaata 245  Q
     ||| |||| |||||||||||||||    
T  16544427 gcatcattataatcaatgaaaaata 16544451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 21 - 212
Target Start/End: Complemental strand, 25541394 - 25541200
Alignment:
Q  21 gaagtcccaaagagcgtataatcccgaagagagattcatgggtgactc--attttattctagtaaagtaataacgattcaactagttactagaagggtct 118  Q
    |||||| ||||||||||| || | ||||||||| ||||||||||||||  || ||||| ||| |||   |||| || ||| || ||| ||| |||| |||    
T  25541394 gaagtcacaaagagcgtacaagctcgaagagaggttcatgggtgactctcatcttattatagcaaaaggataatgactcagctggtttctaaaaggatct 25541295  T
Q  119 tttaggcatattctattagatagtt-actaagaagcgctattatgtagccattttagttatcttataatgagcatcctcaagcctatataagcat 212  Q
    |||||   |||| |||||| ||||| ||||||||| |||||| | ||||| || |||||||| ||||||||| |||| ||||| |||| ||||||    
T  25541294 tttagatgtattttattaggtagtttactaagaagtgctattgtatagccgttgtagttatcctataatgaggatccacaagcttataaaagcat 25541200  T

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Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 111 - 249
Target Start/End: Complemental strand, 23405689 - 23405551
Alignment:
Q  111 aagggtcttttaggcatattctattagatagttactaagaagcgctattatgtagccattttagttatcttataatgagcatcctcaagcctatataagc 210  Q
    |||| |||||||||||||||||||||| ||||||||||| |   ||||| ||||||| || |||||||||||  ||| | || | |||| |||| ||| |    
T  23405689 aaggatcttttaggcatattctattagttagttactaagcaatactattgtgtagccgttgtagttatcttactatgtgtatgcacaagtctatctaaac 23405590  T
Q  211 attgtatctttcatgattagaatcaatgaaaaatataat 249  Q
    |||||||   | || || |||||||||||||||||||||    
T  23405589 attgtatgccttattatgagaatcaatgaaaaatataat 23405551  T

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Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 196 - 312
Target Start/End: Complemental strand, 18584015 - 18583898
Alignment:
Q  196 caagcctatataagcattgtatctttcatgattagaatcaatgaaaaatataataaannnnnnn-cttttatctctaattttctctcttaatttatggag 294  Q
    |||| |||||||||||||||||  || || || ||||||||||||||||||| | ||        |||||||||||| |||||||||||||||| |||||    
T  18584015 caagtctatataagcattgtatgctttattatgagaatcaatgaaaaatatactgaatttcctttcttttatctctagttttctctcttaatttctggag 18583916  T
Q  295 tgtgatccctactcgaat 312  Q
    ||| ||| ||||||||||    
T  18583915 tgtaatctctactcgaat 18583898  T

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Target: chr3 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 116 - 213
Target Start/End: Original strand, 14029259 - 14029356
Alignment:
Q  116 tcttttaggcatattctattagatagttactaagaagcgctattatgtagccattttagttatcttataatgagcatcctcaagcctatataagcatt 213  Q
    ||||||| |||||||||||||| ||||||||||| || | |||| ||||||| || |||||||||||||||||| || | ||||||||||||| ||||    
T  14029259 tcttttaagcatattctattagttagttactaagcagtgttattgtgtagccgttgtagttatcttataatgagtatgcacaagcctatataaacatt 14029356  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 196 - 249
Target Start/End: Original strand, 36326511 - 36326564
Alignment:
Q  196 caagcctatataagcattgtatctttcatgattagaatcaatgaaaaatataat 249  Q
    |||| |||||||||||||||||  || || || |||||||||||||||||||||    
T  36326511 caagtctatataagcattgtatgctttattatgagaatcaatgaaaaatataat 36326564  T

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Target: chr8 (Bit Score: 45; Significance: 1e-16; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 260 - 312
Target Start/End: Original strand, 11825086 - 11825138
Alignment:
Q  260 cttttatctctaattttctctcttaatttatggagtgtgatccctactcgaat 312  Q
    ||||||||| |||||||||||||||||||||||||||||||||||| ||||||    
T  11825086 cttttatctttaattttctctcttaatttatggagtgtgatccctattcgaat 11825138  T

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Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 111 - 249
Target Start/End: Original strand, 44765210 - 44765348
Alignment:
Q  111 aagggtcttttaggcatattctattagatagttactaagaagcgctattatgtagccattttagttatcttataatgagcatcctcaagcctatataagc 210  Q
    |||| |||||||||||||||||||||| ||||||||||| |  ||||||  |||||| || |||||| ||||  ||| | || | |||| |||||||| |    
T  44765210 aaggatcttttaggcatattctattagttagttactaagcaatgctattgcgtagccgttgtagttagcttactatgtgtatgcacaagtctatataaac 44765309  T
Q  211 attgtatctttcatgattagaatcaatgaaaaatataat 249  Q
    |||||||   | || || | |||||||||||||||||||    
T  44765310 attgtattccttattatgaaaatcaatgaaaaatataat 44765348  T

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Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 118 - 249
Target Start/End: Original strand, 44761910 - 44762041
Alignment:
Q  118 ttttaggcatattctattagatagttactaagaagcgctattatgtagccattttagttatcttataatgagcatcctcaagcctatataagcattgtat 217  Q
    |||||| ||||||||||||| ||||||||||| |  |||||| ||||||| || |||||| ||||  ||| | || | |||| |||||||| ||||||||    
T  44761910 ttttagacatattctattagttagttactaagcaatgctattgtgtagccgttgtagttagcttactatgtgtatgcacaagtctatataaacattgtat 44762009  T
Q  218 ctttcatgattagaatcaatgaaaaatataat 249  Q
       | || || | |||||||||||||||||||    
T  44762010 gccttattatgaaaatcaatgaaaaatataat 44762041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 260 - 305
Target Start/End: Original strand, 23090090 - 23090135
Alignment:
Q  260 cttttatctctaattttctctcttaatttatggagtgtgatcccta 305  Q
    ||||||||||| |||||||||| |||||||||||||| ||| ||||    
T  23090090 cttttatctctgattttctctcataatttatggagtgcgattccta 23090135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 202 - 249
Target Start/End: Complemental strand, 14276685 - 14276637
Alignment:
Q  202 tatataagcattgta-tctttcatgattagaatcaatgaaaaatataat 249  Q
    ||||||||||||||| |  |||||||||| |||||||||||||||||||    
T  14276685 tatataagcattgtaatgcttcatgattaaaatcaatgaaaaatataat 14276637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 196 - 312
Target Start/End: Original strand, 24108719 - 24108836
Alignment:
Q  196 caagcctatataagcattgtatctttcatgattagaatcaatgaaaaatataataaannnnnnnct-tttatctctaattttctctcttaatttatggag 294  Q
    |||| ||||||||||||||||| | | |||||||||| |||||||||||||||| ||        | ||| |||||| ||||||  |||||||| |||||    
T  24108719 caagtctatataagcattgtatgtcttatgattagaaccaatgaaaaatataatgaatttccttttgtttgtctctagttttcttccttaatttctggag 24108818  T
Q  295 tgtgatccctactcgaat 312  Q
    ||||||||||||||||||    
T  24108819 tgtgatccctactcgaat 24108836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 175 - 249
Target Start/End: Original strand, 8123528 - 8123602
Alignment:
Q  175 ttatcttataatgagcatcctcaagcctatataagcattgtatctttcatgattagaatcaatgaaaaatataat 249  Q
    ||||||||| ||||| || | |||| |||||||||||||||||  || || || |||||||||||||||||||||    
T  8123528 ttatcttattatgagtatgcacaagtctatataagcattgtatgctttattatgagaatcaatgaaaaatataat 8123602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 260 - 312
Target Start/End: Original strand, 671548 - 671600
Alignment:
Q  260 cttttatctctaattttctctcttaatttatggagtgtgatccctactcgaat 312  Q
    ||||||||||||  ||||||||||||||| || ||||||||||| ||||||||    
T  671548 cttttatctctagctttctctcttaatttctgaagtgtgatcccaactcgaat 671600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 111 - 149
Target Start/End: Original strand, 41709470 - 41709508
Alignment:
Q  111 aagggtcttttaggcatattctattagatagttactaag 149  Q
    |||| |||||||||||||||||||||| |||||||||||    
T  41709470 aaggatcttttaggcatattctattagttagttactaag 41709508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 175 - 249
Target Start/End: Original strand, 4834719 - 4834793
Alignment:
Q  175 ttatcttataatgagcatcctcaagcctatataagcattgtatctttcatgattagaatcaatgaaaaatataat 249  Q
    ||||||||| ||||| || |  ||| |||||||||||||||||   |||| ||||||||||||||||||||||||    
T  4834719 ttatcttattatgagtatgcataagtctatataagcattgtatgcctcattattagaatcaatgaaaaatataat 4834793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 175 - 249
Target Start/End: Original strand, 33242848 - 33242922
Alignment:
Q  175 ttatcttataatgagcatcctcaagcctatataagcattgtatctttcatgattagaatcaatgaaaaatataat 249  Q
    ||||||||| ||||| || | |||| |||||||||||||||||   | || || |||||||||||||||||||||    
T  33242848 ttatcttattatgagtatgcacaagtctatataagcattgtatgccttattatgagaatcaatgaaaaatataat 33242922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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