View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17287_low_6 (Length: 609)

Name: NF17287_low_6
Description: NF17287
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17287_low_6
NF17287_low_6
[»] chr5 (31 HSPs)
chr5 (1-596)||(8547454-8548049)
chr5 (460-580)||(9074125-9074245)
chr5 (465-576)||(1599691-1599802)
chr5 (462-580)||(8529538-8529656)
chr5 (470-580)||(8536110-8536220)
chr5 (23-300)||(1599940-1600218)
chr5 (93-300)||(8529192-8529403)
chr5 (117-227)||(8644488-8644598)
chr5 (504-574)||(2844444-2844514)
chr5 (504-574)||(2856277-2856347)
chr5 (504-574)||(2873887-2873957)
chr5 (504-574)||(2904393-2904463)
chr5 (117-227)||(8637143-8637253)
chr5 (193-298)||(2874139-2874248)
chr5 (195-300)||(8535858-8535967)
chr5 (92-297)||(9074369-9074578)
chr5 (92-300)||(8641634-8641846)
chr5 (193-298)||(2856529-2856638)
chr5 (3-71)||(8535669-8535737)
chr5 (242-300)||(2904643-2904705)
chr5 (369-416)||(8536024-8536071)
chr5 (23-58)||(9074606-9074641)
chr5 (117-167)||(2904783-2904833)
chr5 (117-171)||(8678090-8678144)
chr5 (477-571)||(11353898-11353992)
chr5 (477-571)||(11373401-11373495)
chr5 (25-66)||(8529133-8529174)
chr5 (25-61)||(2904878-2904914)
chr5 (243-300)||(8644623-8644684)
chr5 (345-397)||(8644717-8644769)
chr5 (22-58)||(9003647-9003683)
[»] scaffold0627 (3 HSPs)
scaffold0627 (361-595)||(5187-5418)
scaffold0627 (118-303)||(4948-5135)
scaffold0627 (17-66)||(4829-4878)
[»] chr6 (3 HSPs)
chr6 (361-592)||(16716885-16717113)
chr6 (118-303)||(16716647-16716836)
chr6 (17-66)||(16716528-16716577)
[»] chr7 (6 HSPs)
chr7 (20-300)||(48361492-48361773)
chr7 (464-580)||(48361239-48361355)
chr7 (460-576)||(35780427-35780544)
chr7 (23-68)||(35780016-35780061)
chr7 (369-416)||(35780336-35780383)
chr7 (369-416)||(48361388-48361435)
[»] chr4 (3 HSPs)
chr4 (93-300)||(9443353-9443564)
chr4 (462-580)||(9443699-9443817)
chr4 (25-66)||(9443294-9443335)
[»] chr1 (1 HSPs)
chr1 (93-164)||(5131022-5131093)


Alignment Details
Target: chr5 (Bit Score: 572; Significance: 0; HSPs: 31)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 572; E-Value: 0
Query Start/End: Original strand, 1 - 596
Target Start/End: Complemental strand, 8548049 - 8547454
Alignment:
Q  1 gtaacataagagaaacagttcgagtcacaaatgtaaagacatccctttaattctcccaagctaatacgtcttctcgcaccacgaacttcggtattatgat 100  Q
    ||||||||||||| | ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  8548049 gtaacataagagagatagttccagtcacaaatgtaaagacatccctttaattctcccaagctaatacgtcttctcacaccacgaacttcggtattatgat 8547950  T
Q  101 tttcaaacacagatgaaggagaaggaaatgattgaaacctctctctttcaaaacaaaaacacaatatagaccctcccctttccttaaatcggatccaatg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8547949 tttcaaacacagatgaaggagaaggaaatgattgaaacctctctctttcaaaacaaaaacacaatatagaccctcccctttccttaaatcggatccaatg 8547850  T
Q  201 aagtgcacgattcacacaagtgggatacataagataagaagaagaaatttgaggatccacttatttctccatgttggtgttccgagtgtgtgtatctcaa 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8547849 aagtgcacgattcacacaagtgggatacataagataagaagaagaaatttgaggatccacttatttctccatgttggtgttccgagtgtgtgtatctcaa 8547750  T
Q  301 caattaccacacgctcaatctcacatgcataatcacatattgcacgtctagcatatttcttccaaatatttatcactttatattcattagttttaggata 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8547749 caattaccacacgctcaatctcacatgcataatcacatattgcacgtctagcatatttcttccaaatatttatcactttatattcattagttttaggata 8547650  T
Q  401 gaaaccacaaccagctgcttcttgatttaaaacataatctgtgtcatttggcatacgaatcgtagtagcttcaagaagtcttatgaactcccctgtgatt 500  Q
    |||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8547649 gaaaccacaaccagctgcttcttgatttaaaatataagctgtgtcatttggcatacgaatcgtagtagcttcaagaagtcttatgaactcccctgtgatt 8547550  T
Q  501 ggattgcagatcactaaagggtttccggtagttggttcagacaaacaaagcaagccactgcaagaattcacaatatcaaaatgatcacgatctctg 596  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8547549 ggattgcagatcactaaagggtttccggtagttggttcagacaaacaaagcaagccactgcaagaattcacaatatcaaaatgatcacgatctctg 8547454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 460 - 580
Target Start/End: Complemental strand, 9074245 - 9074125
Alignment:
Q  460 tcgtagtagcttcaagaagtcttatgaactcccctgtgattggattgcagatcactaaagggtttccggtagttggttcagacaaacaaagcaagccact 559  Q
    |||| ||||||||| |||||||||||||||||||||||| ||| |||||||||||| |||||||||||||||||||||||||||||||||| || ||| |    
T  9074245 tcgtggtagcttcaggaagtcttatgaactcccctgtgactgggttgcagatcactgaagggtttccggtagttggttcagacaaacaaagtaaaccatt 9074146  T
Q  560 gcaagaattcacaatatcaaa 580  Q
    |||||||||||||||||||||    
T  9074145 gcaagaattcacaatatcaaa 9074125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 465 - 576
Target Start/End: Complemental strand, 1599802 - 1599691
Alignment:
Q  465 gtagcttcaagaagtcttatgaactcccctgtgattggattgcagatcactaaagggtttccggtagttggttcagacaaacaaagcaagccactgcaag 564  Q
    |||| |||| ||||||||||||||||||| |||||||| |||||||||||||| |||||||||  |  ||| |||||||||||||| || ||| ||||||    
T  1599802 gtagattcaggaagtcttatgaactccccagtgattgggttgcagatcactaatgggtttccgaaatatgggtcagacaaacaaagtaaaccattgcaag 1599703  T
Q  565 aattcacaatat 576  Q
    ||||||||||||    
T  1599702 aattcacaatat 1599691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 462 - 580
Target Start/End: Original strand, 8529538 - 8529656
Alignment:
Q  462 gtagtagcttcaagaagtcttatgaactcccctgtgattggattgcagatcactaaagggtttccggtagttggttcagacaaacaaagcaagccactgc 561  Q
    ||||||| |||| ||||||||||||||||||| |||| ||| |||||||||||||  ||||||||   || ||| |||||||||||||| || ||| |||    
T  8529538 gtagtagattcaggaagtcttatgaactcccccgtgactgggttgcagatcactattgggtttccaaaagatgggtcagacaaacaaagtaaaccattgc 8529637  T
Q  562 aagaattcacaatatcaaa 580  Q
    |||||||||||||||||||    
T  8529638 aagaattcacaatatcaaa 8529656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 470 - 580
Target Start/End: Original strand, 8536110 - 8536220
Alignment:
Q  470 ttcaagaagtcttatgaactcccctgtgattggattgcagatcactaaagggtttccggtagttggttcagacaaacaaagcaagccactgcaagaattc 569  Q
    |||| |||||||||| |||||||| |||| ||| |||||||||||||| ||||||||   || ||| |||||||||||||| || ||| |||||||||||    
T  8536110 ttcaggaagtcttataaactccccagtgactgggttgcagatcactaatgggtttccaaaagatgggtcagacaaacaaagtaaaccattgcaagaattc 8536209  T
Q  570 acaatatcaaa 580  Q
    |||||||||||    
T  8536210 acaatatcaaa 8536220  T

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Target: chr5; HSP #6
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 23 - 300
Target Start/End: Complemental strand, 1600218 - 1599940
Alignment:
Q  23 agtcacaaatgtaaagacatccctttaattctcccaagctaatacgtcttctcgcaccacgaacttcggtattatgattttcaaacacagatgaaggaga 122  Q
    ||||||||||||||||| |||||||||||||||||| ||||| | | ||  |   ||||| |  | |  ||||||||||| ||||| ||  || ||||||    
T  1600218 agtcacaaatgtaaagaaatccctttaattctcccatgctaacatggctgtt---accacaagttccattattatgatttccaaactcatgtggaggaga 1600122  T
Q  123 aggaaatgattgaaacctctctctttcaaaacaaaaacacaatatagaccctcccctttccttaaatcggatccaatgaagtgcacgattcacacaagtg 222  Q
    ||||||||| || |||||||| ||||||||||| |||  |||||| |||  |  |    ||| | |||  |||||||||||||||| |||||||||||||    
T  1600121 aggaaatgactgcaacctctcactttcaaaacagaaaaccaatattgacatttgctcaccctcatatcttatccaatgaagtgcaccattcacacaagtg 1600022  T
Q  223 ggatacataagataagaagaagaaatttgaggatccactt----atttctccatgttggtgttccgagtgtgtgtatctcaa 300  Q
    |||| | ||||     || |||||||||||||||||||||    ||||||||| | ||||||||| ||||||| ||||||||    
T  1600021 ggattcttaagcatccaaaaagaaatttgaggatccacttcaacatttctccaggatggtgttccaagtgtgtttatctcaa 1599940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 93 - 300
Target Start/End: Original strand, 8529192 - 8529403
Alignment:
Q  93 attatgattttcaaacacagatgaaggagaaggaaatgattgaaacctctctctttcaaaacaaaaacacaatatagaccctcccctttccttaaatcgg 192  Q
    |||||||||| ||||||||  || |||||||||||| || || ||||||||  ||||||| || |||  |||||| |||| |  |    ||| |||||      
T  8529192 attatgatttccaaacacatgtggaggagaaggaaacgactgcaacctctcattttcaaagcagaaaaccaatattgacctttgctgaccctcaaatctt 8529291  T
Q  193 atccaatgaagtgcacgattcacacaagtgggatacataagataagaagaagaaatttgaggatccactt----atttctccatgttggtgttccgagtg 288  Q
    |||||||||||||||| ||||||||||||||||||| | |||   ||| |||||||||||||||||||||    ||||||||| | || |||||| ||||    
T  8529292 atccaatgaagtgcaccattcacacaagtgggatactttagactcgaaaaagaaatttgaggatccacttcaacatttctccaggatgttgttccaagtg 8529391  T
Q  289 tgtgtatctcaa 300  Q
    ||| ||||||||    
T  8529392 tgtttatctcaa 8529403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 117 - 227
Target Start/End: Original strand, 8644488 - 8644598
Alignment:
Q  117 aggagaaggaaatgattgaaacctctctctttcaaaacaaaaacacaatatagaccctcccctttccttaaatcggatccaatgaagtgcacgattcaca 216  Q
    |||||||||||||||||| |||||||| ||||||||||| |||||||||||||||| | |    |||| ||||| |||||||||||| |||| ||| |||    
T  8644488 aggagaaggaaatgattgcaacctctcactttcaaaacagaaacacaatatagacctttcttcatcctcaaatctgatccaatgaagcgcaccattaaca 8644587  T
Q  217 caagtgggata 227  Q
     ||||||||||    
T  8644588 taagtgggata 8644598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 504 - 574
Target Start/End: Complemental strand, 2844514 - 2844444
Alignment:
Q  504 ttgcagatcactaaagggtttccggtagttggttcagacaaacaaagcaagccactgcaagaattcacaat 574  Q
    ||||| |||||||||||| ||||| ||| || |||||| ||||||||||||||| ||||||||||||||||    
T  2844514 ttgcaaatcactaaagggcttccgatagatgtttcagataaacaaagcaagccattgcaagaattcacaat 2844444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 504 - 574
Target Start/End: Complemental strand, 2856347 - 2856277
Alignment:
Q  504 ttgcagatcactaaagggtttccggtagttggttcagacaaacaaagcaagccactgcaagaattcacaat 574  Q
    ||||| |||||||||||| ||||| ||| || |||||| ||||||||||||||| ||||||||||||||||    
T  2856347 ttgcaaatcactaaagggcttccgatagatgtttcagataaacaaagcaagccattgcaagaattcacaat 2856277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 504 - 574
Target Start/End: Complemental strand, 2873957 - 2873887
Alignment:
Q  504 ttgcagatcactaaagggtttccggtagttggttcagacaaacaaagcaagccactgcaagaattcacaat 574  Q
    ||||| |||||||||||| ||||| ||| || |||||| ||||||||||||||| ||||||||||||||||    
T  2873957 ttgcaaatcactaaagggcttccgatagatgtttcagataaacaaagcaagccattgcaagaattcacaat 2873887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 504 - 574
Target Start/End: Complemental strand, 2904463 - 2904393
Alignment:
Q  504 ttgcagatcactaaagggtttccggtagttggttcagacaaacaaagcaagccactgcaagaattcacaat 574  Q
    ||||| ||| |||||||| ||||||||| || |||||| ||||||||||||||| ||||||||||||||||    
T  2904463 ttgcaaatcgctaaagggcttccggtagatgtttcagataaacaaagcaagccattgcaagaattcacaat 2904393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 117 - 227
Target Start/End: Original strand, 8637143 - 8637253
Alignment:
Q  117 aggagaaggaaatgattgaaacctctctctttcaaaacaaaaacacaatatagaccctcccctttccttaaatcggatccaatgaagtgcacgattcaca 216  Q
    |||||||||||||||||| ||||||||  |||| ||||| |||||||||||||||| | |     ||||||||| |||||||||||  | || |||||||    
T  8637143 aggagaaggaaatgattgcaacctctcattttctaaacagaaacacaatatagacctttcttgacccttaaatctgatccaatgaatcgtaccattcaca 8637242  T
Q  217 caagtgggata 227  Q
    |||||||||||    
T  8637243 caagtgggata 8637253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 193 - 298
Target Start/End: Complemental strand, 2874248 - 2874139
Alignment:
Q  193 atccaatgaagtgcacgattcacacaagtgggatacataagataagaagaagaaatttgaggatccactt----atttctccatgttggtgttccgagtg 288  Q
    |||||||||||||| | ||||||||| || |||| || ||| |   || |||||||||||||||||||||    ||||||||||| |||||||||||| |    
T  2874248 atccaatgaagtgcgccattcacacatgttggattcaaaagcttcaaaaaagaaatttgaggatccacttcaacatttctccatgatggtgttccgagcg 2874149  T
Q  289 tgtgtatctc 298  Q
    ||||||||||    
T  2874148 tgtgtatctc 2874139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 195 - 300
Target Start/End: Original strand, 8535858 - 8535967
Alignment:
Q  195 ccaatgaagtgcacgattcacacaagtgggatacataagataagaagaagaaatttgaggatccactt----atttctccatgttggtgttccgagtgtg 290  Q
    |||||| ||||||| ||||||||||||||||||| | |||   ||| |||||||||||||||||||||    ||||||||| | ||| ||||| ||||||    
T  8535858 ccaatgtagtgcaccattcacacaagtgggatactttagactcgaaaaagaaatttgaggatccacttcaacatttctccaggatggggttccaagtgtg 8535957  T
Q  291 tgtatctcaa 300  Q
    | ||||||||    
T  8535958 tttatctcaa 8535967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 92 - 297
Target Start/End: Complemental strand, 9074578 - 9074369
Alignment:
Q  92 tattatgattttcaaacacagatgaaggagaaggaaatgattgaaacctctctctttcaaaacaaaaacacaatatagaccctcccctttccttaaatcg 191  Q
    ||||||| ||| ||||||||   | ||||||||||||||| || |||||||| ||||||||||| ||| ||||||| |||| |  |   |  | | |||     
T  9074578 tattatggtttccaaacacatgcggaggagaaggaaatgactgcaacctctcactttcaaaacagaaaaacaatattgacctttgctgattttcatatct 9074479  T
Q  192 gatccaatgaagtgcacgattcacacaagtgggatacataagataagaagaagaaatttgaggatccactt----atttctccatgttggtgttccgagt 287  Q
     |||||||||||||||| |||||||||||||||||||   |||    || |||||||||||||||||||||    ||||||| || ||| |||||| |||    
T  9074478 tatccaatgaagtgcaccattcacacaagtgggatactcgagactcaaaaaagaaatttgaggatccacttcaacatttctcaatattgttgttccaagt 9074379  T
Q  288 gtgtgtatct 297  Q
    |||| |||||    
T  9074378 gtgtttatct 9074369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 92 - 300
Target Start/End: Original strand, 8641634 - 8641846
Alignment:
Q  92 tattatgattttcaaacacagatgaaggagaaggaaatgattgaaacctctctctttcaaaacaaaaacacaatatagaccctcccctttccttaaatcg 191  Q
    ||||||||||| ||||||||  || ||||||||||||| | |  || ||||| ||||| ||||| ||||| ||||| |||| |  |    ||| ||||      
T  8641634 tattatgatttccaaacacatgtggaggagaaggaaataacttcaatctctcactttccaaacagaaacataatattgacctttgctccccctcaaattt 8641733  T
Q  192 gatccaatgaagtgcacgattcacacaagtgggatacataagataagaagaagaaatttgaggatccactt----atttctccatgttggtgttccgagt 287  Q
    ||| ||||||||  ||| ||||||||||||||||||| |||||   |||  |||||| |||||||||||||    ||||||||||| ||||| ||| |||    
T  8641734 gattcaatgaagaacactattcacacaagtgggatacttaagactcgaaatagaaatctgaggatccacttcaacatttctccatgatggtgctccaagt 8641833  T
Q  288 gtgtgtatctcaa 300  Q
    |||| ||||||||    
T  8641834 gtgtttatctcaa 8641846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 193 - 298
Target Start/End: Complemental strand, 2856638 - 2856529
Alignment:
Q  193 atccaatgaagtgcacgattcacacaagtgggatacataagataagaagaagaaatttgaggatccactt----atttctccatgttggtgttccgagtg 288  Q
    |||||||||||||| | ||||||||| || |||| || ||| |   || |||||||||||||||||||||    ||||||||||| || ||||||||| |    
T  2856638 atccaatgaagtgcgccattcacacatgttggattcaaaagcttcaaaaaagaaatttgaggatccacttcaacatttctccatgatgatgttccgagcg 2856539  T
Q  289 tgtgtatctc 298  Q
    ||||||||||    
T  2856538 tgtgtatctc 2856529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 3 - 71
Target Start/End: Original strand, 8535669 - 8535737
Alignment:
Q  3 aacataagagaaacagttcgagtcacaaatgtaaagacatccctttaattctcccaagctaatacgtct 71  Q
    ||||| ||| ||| || |||| ||||||||||||||| |||||||||||||||||| ||||||| ||||    
T  8535669 aacatcagataaaaaggtcgaatcacaaatgtaaagaaatccctttaattctcccatgctaatatgtct 8535737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 242 - 300
Target Start/End: Complemental strand, 2904705 - 2904643
Alignment:
Q  242 aagaaatttgaggatccactt----atttctccatgttggtgttccgagtgtgtgtatctcaa 300  Q
    |||||||||||||||||||||    ||||||||||| || ||||||||| |||||||||||||    
T  2904705 aagaaatttgaggatccacttcaagatttctccatgatgttgttccgagcgtgtgtatctcaa 2904643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 369 - 416
Target Start/End: Original strand, 8536024 - 8536071
Alignment:
Q  369 tttatcactttatattcattagttttaggatagaaaccacaaccagct 416  Q
    |||||||| |||||||||||||||||||| | ||||||| ||||||||    
T  8536024 tttatcaccttatattcattagttttaggttggaaaccaaaaccagct 8536071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 23 - 58
Target Start/End: Complemental strand, 9074641 - 9074606
Alignment:
Q  23 agtcacaaatgtaaagacatccctttaattctccca 58  Q
    ||||||||||||||||| ||||||||||||||||||    
T  9074641 agtcacaaatgtaaagaaatccctttaattctccca 9074606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 117 - 167
Target Start/End: Complemental strand, 2904833 - 2904783
Alignment:
Q  117 aggagaaggaaatgattgaaacctctctctttcaaaacaaaaacacaatat 167  Q
    |||||||||||||||||| | |||||| ||||||||||  |||||||||||    
T  2904833 aggagaaggaaatgattgcatcctctcactttcaaaactgaaacacaatat 2904783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 117 - 171
Target Start/End: Original strand, 8678090 - 8678144
Alignment:
Q  117 aggagaaggaaatgattgaaacctctctctttcaaaacaaaaacacaatatagac 171  Q
    |||||||||||||||||| ||| ||||  |||| ||||| |||||||||||||||    
T  8678090 aggagaaggaaatgattgcaacttctcagtttctaaacagaaacacaatatagac 8678144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 477 - 571
Target Start/End: Complemental strand, 11353992 - 11353898
Alignment:
Q  477 agtcttatgaactcccctgtgattggattgcagatcactaaagggtttccggtagttggttcagacaaacaaagcaagccactgcaagaattcac 571  Q
    |||||||| ||||| ||| | ||||||||||| |  |||||| ||||| | |||  ||| ||||| ||||||||||||||| |||| ||||||||    
T  11353992 agtcttataaactcacctataattggattgcaaacaactaaatggtttacagtatatggctcagataaacaaagcaagccattgcaggaattcac 11353898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 477 - 571
Target Start/End: Original strand, 11373401 - 11373495
Alignment:
Q  477 agtcttatgaactcccctgtgattggattgcagatcactaaagggtttccggtagttggttcagacaaacaaagcaagccactgcaagaattcac 571  Q
    |||||||| ||||| ||| | ||||||||||| |  |||||| ||||| | |||  ||| ||||| ||||||||||||||| |||| ||||||||    
T  11373401 agtcttataaactcacctataattggattgcaaacaactaaatggtttacagtatatggctcagataaacaaagcaagccattgcaggaattcac 11373495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 25 - 66
Target Start/End: Original strand, 8529133 - 8529174
Alignment:
Q  25 tcacaaatgtaaagacatccctttaattctcccaagctaata 66  Q
    ||||||||||| ||| |||||||||||||||||| |||||||    
T  8529133 tcacaaatgtatagaaatccctttaattctcccatgctaata 8529174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 25 - 61
Target Start/End: Complemental strand, 2904914 - 2904878
Alignment:
Q  25 tcacaaatgtaaagacatccctttaattctcccaagc 61  Q
    ||||||||||||||| ||||||| |||||||||||||    
T  2904914 tcacaaatgtaaagaaatcccttcaattctcccaagc 2904878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 243 - 300
Target Start/End: Original strand, 8644623 - 8644684
Alignment:
Q  243 agaaatttgaggatccactt----atttctccatgttggtgttccgagtgtgtgtatctcaa 300  Q
    ||||||||||||||| ||||    ||||||||||| ||||||||| ||||||| ||||||||    
T  8644623 agaaatttgaggatctacttcagcatttctccatgatggtgttccaagtgtgtttatctcaa 8644684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 345 - 397
Target Start/End: Original strand, 8644717 - 8644769
Alignment:
Q  345 cgtctagcatatttcttccaaatatttatcactttatattcattagttttagg 397  Q
    |||||| ||||||| | ||||||||  ||||| ||||||||||||||||||||    
T  8644717 cgtctaacatatttgtcccaaatatacatcaccttatattcattagttttagg 8644769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 22 - 58
Target Start/End: Original strand, 9003647 - 9003683
Alignment:
Q  22 gagtcacaaatgtaaagacatccctttaattctccca 58  Q
    |||||||||||||||||| ||||| ||||||||||||    
T  9003647 gagtcacaaatgtaaagaaatccccttaattctccca 9003683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0627 (Bit Score: 101; Significance: 9e-50; HSPs: 3)
Name: scaffold0627
Description:

Target: scaffold0627; HSP #1
Raw Score: 101; E-Value: 9e-50
Query Start/End: Original strand, 361 - 595
Target Start/End: Original strand, 5187 - 5418
Alignment:
Q  361 tccaaatatttatcactttatattcattagttttaggatagaaaccacaaccagctgcttcttgatttaaaacataatctgtgtcatttggcatacgaat 460  Q
    ||||||||| |||||||||||||||||||||  |||||||||||||| ||||||||   |||||   ||  |||  | | ||||||| |||||||||||     
T  5187 tccaaatatgtatcactttatattcattagtcgtaggatagaaaccaaaaccagct---tcttgtcctattacacgaaccgtgtcatgtggcatacgaac 5283  T
Q  461 cgtagtagcttcaagaagtcttatgaactcccctgtgattggattgcagatcactaaagggtttccggtagttggttcagacaaacaaagcaagccactg 560  Q
    |||| |||||||| |||||||||||||||||||  ||| ||| |||||||||||||||||||||||||||||||||| ||||||||| ||||||||| |     
T  5284 cgtattagcttcaggaagtcttatgaactcccccatgaatgggttgcagatcactaaagggtttccggtagttggttgagacaaacatagcaagccatta 5383  T
Q  561 caagaattcacaatatcaaaatgatcacgatctct 595  Q
    || ||||||||||||  ||||| ||| ||||||||    
T  5384 caggaattcacaatactaaaattatcgcgatctct 5418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0627; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 118 - 303
Target Start/End: Original strand, 4948 - 5135
Alignment:
Q  118 ggagaaggaaatgattgaaacctctctctttcaaaacaaaaacacaatatagaccctcccctttccttaaatcggatccaatgaagtgcacgattcacac 217  Q
    ||||| ||||||||||| |||||||| || |||||||||||||||||||  |||  | || || ||| ||||| ||||||||||||||||| ||||||||    
T  4948 ggagagggaaatgattgcaacctctcactgtcaaaacaaaaacacaata--gacgtttcctttccctcaaatctgatccaatgaagtgcaccattcacac 5045  T
Q  218 aagtgggatacataagataagaagaagaaatttgaggatccac----ttatttctccatgttggtgttccgagtgtgtgtatctcaacaa 303  Q
    ||||||||| ||||||| | ||| | |||||||||||||||||     ||||||||||||||| ||||||||||||||||||||| ||||    
T  5046 aagtgggattcataagacatgaaaatgaaatttgaggatccacattgatatttctccatgttgatgttccgagtgtgtgtatctcgacaa 5135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0627; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 17 - 66
Target Start/End: Original strand, 4829 - 4878
Alignment:
Q  17 agttcgagtcacaaatgtaaagacatccctttaattctcccaagctaata 66  Q
    |||| |||||||||||||||||| |||||||||||||||||| |||||||    
T  4829 agtttgagtcacaaatgtaaagaaatccctttaattctcccatgctaata 4878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 98; Significance: 6e-48; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 98; E-Value: 6e-48
Query Start/End: Original strand, 361 - 592
Target Start/End: Original strand, 16716885 - 16717113
Alignment:
Q  361 tccaaatatttatcactttatattcattagttttaggatagaaaccacaaccagctgcttcttgatttaaaacataatctgtgtcatttggcatacgaat 460  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||   |||||   ||  |||| | |  ||||||| ||||||||||     
T  16716885 tccaaatatgtatcactttatattcattagttttaggatagaaaccaaaaccagct---tcttgtcctattacatgaaccctgtcattcggcatacgaac 16716981  T
Q  461 cgtagtagcttcaagaagtcttatgaactcccctgtgattggattgcagatcactaaagggtttccggtagttggttcagacaaacaaagcaagccactg 560  Q
     ||||||| |||| ||||||||||||| |||||  ||| ||| ||||||||||||| ||||||||| |||||||||||||||||||| ||||||||| |     
T  16716982 tgtagtagtttcaggaagtcttatgaattcccccatgaatgggttgcagatcactatagggtttccagtagttggttcagacaaacatagcaagccatta 16717081  T
Q  561 caagaattcacaatatcaaaatgatcacgatc 592  Q
    || ||||||||||||| ||| | |||||||||    
T  16717082 catgaattcacaatattaaacttatcacgatc 16717113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 118 - 303
Target Start/End: Original strand, 16716647 - 16716836
Alignment:
Q  118 ggagaaggaaatgattgaaacctctctctttcaaaacaaaaacacaatatagaccctcccctttccttaaatcggatccaatgaagtgcacgattcacac 217  Q
    |||||||||||||| || ||| |||| |||||||||||||||||||||||||||  | ||||| ||| ||||  || |||||||||||||| ||||||||    
T  16716647 ggagaaggaaatgaatgcaacttctcactttcaaaacaaaaacacaatatagacatttcccttccctcaaatgtgaaccaatgaagtgcaccattcacac 16716746  T
Q  218 aagtgggatacataagataagaagaagaaatttgaggatccac----ttatttctccatgttggtgttccgagtgtgtgtatctcaacaa 303  Q
    ||||||||| ||||||| | ||| | |||||||||||||||||     ||||||||||||||||||||||||||||||||||||||||||    
T  16716747 aagtgggattcataagacatgaaaatgaaatttgaggatccacattgatatttctccatgttggtgttccgagtgtgtgtatctcaacaa 16716836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 17 - 66
Target Start/End: Original strand, 16716528 - 16716577
Alignment:
Q  17 agttcgagtcacaaatgtaaagacatccctttaattctcccaagctaata 66  Q
    |||| |||||| ||||||| ||| |||||||||||||||||| |||||||    
T  16716528 agtttgagtcagaaatgtatagaaatccctttaattctcccatgctaata 16716577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 70; Significance: 3e-31; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 20 - 300
Target Start/End: Complemental strand, 48361773 - 48361492
Alignment:
Q  20 tcgagtcacaaatgtaaagacatccctttaattctcccaagctaatacgtcttctcgcaccacgaacttcggtattatgattttcaaacacagatgaagg 119  Q
    |||||||||||||||||||| |||||||||||||||||| ||||||| | ||  |   |||| ||| | |  ||||||||||| ||||||||  || |||    
T  48361773 tcgagtcacaaatgtaaagaaatccctttaattctcccatgctaatatgcctgtt---accaagaattccattattatgatttccaaacacatgtggagg 48361677  T
Q  120 agaaggaaatgattgaaacctctctctttcaaaacaaaaacacaatatagaccctcccctttccttaaatcggatccaatgaagtgcacgattcacacaa 219  Q
    |||||||||||| || | |||||| ||||||||||| ||| ||||||| |||| |  |    ||| |||||  |||||||||||||||| ||||||||||    
T  48361676 agaaggaaatgactgcaccctctcactttcaaaacagaaaaacaatattgacctttgctgaccctcaaatcttatccaatgaagtgcaccattcacacaa 48361577  T
Q  220 gtgggatacataagataagaagaagaaatttgaggatccactt----atttctccatgttggtgttccgagtgtgtgtatctcaa 300  Q
    |||||||||   |||   ||| ||||||| |||||||||||||    ||| ||||| | ||||||||| ||||||| ||||||||    
T  48361576 gtgggatactcgagactcgaaaaagaaatgtgaggatccacttcaacattcctccaggatggtgttccaagtgtgtttatctcaa 48361492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 464 - 580
Target Start/End: Complemental strand, 48361355 - 48361239
Alignment:
Q  464 agtagcttcaagaagtcttatgaactcccctgtgattggattgcagatcactaaagggtttccggtagttggttcagacaaacaaagcaagccactgcaa 563  Q
    ||||| |||| |||||||||||||||||||||||| ||| |||||||||||||| ||||||||   || ||| |||||||||||||| || ||| |||||    
T  48361355 agtagattcaggaagtcttatgaactcccctgtgactgggttgcagatcactaacgggtttcccaaagatggatcagacaaacaaagtaaaccattgcaa 48361256  T
Q  564 gaattcacaatatcaaa 580  Q
    |||||||||||||||||    
T  48361255 gaattcacaatatcaaa 48361239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 460 - 576
Target Start/End: Original strand, 35780427 - 35780544
Alignment:
Q  460 tcgtagtagcttcaagaagtcttatgaactcccctgtgattggattgcagatcactaaaggg-tttccggtagttggttcagacaaacaaagcaagccac 558  Q
    |||||||||||||| ||||||||||||||||||| |||| ||| ||||| |||||||||||| ||| |||||  ||| | ||||||||||||||| |||     
T  35780427 tcgtagtagcttcaggaagtcttatgaactcccccgtgactgggttgcaaatcactaaagggtttttcggtatatggattagacaaacaaagcaaaccat 35780526  T
Q  559 tgcaagaattcacaatat 576  Q
    |||||||||| |||||||    
T  35780527 tgcaagaattgacaatat 35780544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 23 - 68
Target Start/End: Original strand, 35780016 - 35780061
Alignment:
Q  23 agtcacaaatgtaaagacatccctttaattctcccaagctaatacg 68  Q
    ||||||||||||||||| |||||||||||||||||| |||||||||    
T  35780016 agtcacaaatgtaaagaaatccctttaattctcccatgctaatacg 35780061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 369 - 416
Target Start/End: Original strand, 35780336 - 35780383
Alignment:
Q  369 tttatcactttatattcattagttttaggatagaaaccacaaccagct 416  Q
    |||||||| |||||||||||||||||||| | ||||||| ||||||||    
T  35780336 tttatcaccttatattcattagttttaggttggaaaccaaaaccagct 35780383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 369 - 416
Target Start/End: Complemental strand, 48361435 - 48361388
Alignment:
Q  369 tttatcactttatattcattagttttaggatagaaaccacaaccagct 416  Q
    |||||||| |||||||||||||||||||| | ||||||| ||||||||    
T  48361435 tttatcaccttatattcattagttttaggttggaaaccaaaaccagct 48361388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 63; Significance: 4e-27; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 93 - 300
Target Start/End: Original strand, 9443353 - 9443564
Alignment:
Q  93 attatgattttcaaacacagatgaaggagaaggaaatgattgaaacctctctctttcaaaacaaaaacacaatatagaccctcccctttccttaaatcgg 192  Q
    |||||||||| ||||||||  || ||||||||||||||| || |||||||| |||||||| || |||  |||||| |||| |  |   |||| |||||      
T  9443353 attatgatttccaaacacatgtggaggagaaggaaatgactgcaacctctcactttcaaagcagaaaaccaatattgacctttgctcatcctcaaatctt 9443452  T
Q  193 atccaatgaagtgcacgattcacacaagtgggatacataagataagaagaagaaatttgaggatccactt----atttctccatgttggtgttccgagtg 288  Q
    |||||||||||||||| ||||||||||||||||||| | |||   ||| |||||||||||||||||||||    ||||||||| | || |||||| ||||    
T  9443453 atccaatgaagtgcaccattcacacaagtgggatactttagactcgaaaaagaaatttgaggatccacttcaacatttctccaggatgttgttccaagtg 9443552  T
Q  289 tgtgtatctcaa 300  Q
    ||| ||||||||    
T  9443553 tgtttatctcaa 9443564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 462 - 580
Target Start/End: Original strand, 9443699 - 9443817
Alignment:
Q  462 gtagtagcttcaagaagtcttatgaactcccctgtgattggattgcagatcactaaagggtttccggtagttggttcagacaaacaaagcaagccactgc 561  Q
    ||||||| |||| ||||||||||||||||||| |||| ||| |||||||||||||  ||||||||   || ||| |||||||||||||| || ||| |||    
T  9443699 gtagtagattcaggaagtcttatgaactcccccgtgactgggttgcagatcactattgggtttccaaaagatgggtcagacaaacaaagtaaaccattgc 9443798  T
Q  562 aagaattcacaatatcaaa 580  Q
    |||||||||||||||||||    
T  9443799 aagaattcacaatatcaaa 9443817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 25 - 66
Target Start/End: Original strand, 9443294 - 9443335
Alignment:
Q  25 tcacaaatgtaaagacatccctttaattctcccaagctaata 66  Q
    ||||||||||| ||| |||||||||||||||||| |||||||    
T  9443294 tcacaaatgtatagaaatccctttaattctcccatgctaata 9443335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 93 - 164
Target Start/End: Original strand, 5131022 - 5131093
Alignment:
Q  93 attatgattttcaaacacagatgaaggagaaggaaatgattgaaacctctctctttcaaaacaaaaacacaa 164  Q
    ||||||||||||||||||   || ||||||||| |||||||| || ||||| ||||||||||  ||||||||    
T  5131022 attatgattttcaaacacgtgtggaggagaagggaatgattgcaatctctcactttcaaaactgaaacacaa 5131093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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