View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17287_low_64 (Length: 255)
Name: NF17287_low_64
Description: NF17287
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17287_low_64 |
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Alignment Details
Target: chr2 (Bit Score: 214; Significance: 1e-117; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 11 - 240
Target Start/End: Complemental strand, 5469161 - 5468932
Alignment:
| Q |
11 |
cacagagccctaggttgcctacatatgatagctcattgaaggtgccaaactgattagctgttggaatttgtccagagaggttgttgtaggacaagttcaa |
110 |
Q |
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| T |
5469161 |
cacaaagcccttggttgcctacatatgatagctcattgaaggtgccaaactgattagctgttggaatttgtccagagaggttgttgtaggacaagttcaa |
5469062 |
T |
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| Q |
111 |
ataactcaaggatgtcatggaagccatgctcgtagggattggaccggaaagattgttatgtgaaaggtcaagattttctaaatctctttgtgatccaatg |
210 |
Q |
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| T |
5469061 |
ataactcaaggatgtcatggaagccatgctcgcagggattggaccggaaagattgttatgtgaaaggtcaagattttctaaatctctttgtgatccaatg |
5468962 |
T |
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| Q |
211 |
ttgttgggtatatttccagtgagctgattc |
240 |
Q |
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| T |
5468961 |
ttgttgggtatatttccagtaagctgattc |
5468932 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 41 - 240
Target Start/End: Complemental strand, 5478768 - 5478569
Alignment:
| Q |
41 |
gctcattgaaggtgccaaactgattagctgttggaatttgtccagagaggttgttgtaggacaagttcaaataactcaaggatgtcatggaagccatgct |
140 |
Q |
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| T |
5478768 |
gctcattgaaggtgccaaactgattagccatcggaatttgttctgaaagattgttgtatgacaaattcaaatgactcaagaatgtcattgaagccatgct |
5478669 |
T |
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| Q |
141 |
cgtagggattggaccggaaagattgttatgtgaaaggtcaagattttctaaatctctttgtgatccaatgttgttgggtatatttccagtgagctgattc |
240 |
Q |
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| T |
5478668 |
tggagggactggacctgaaagattattatgtgaaaggtcaagattttctaaatctattagtgatccaatgttattgggtatattcccagtaagctgattc |
5478569 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 25 - 240
Target Start/End: Complemental strand, 5486907 - 5486692
Alignment:
| Q |
25 |
ttgcctacatatgatagctcattgaaggtgccaaactgattagctgttggaatttgtccagagaggttgttgtaggacaagttcaaataactcaaggatg |
124 |
Q |
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| T |
5486907 |
ttgcctacatatgatagctcattgaaggtgccaaattgattagccactggaatttgtccagaaaggttgttgtatgataagttcaaaaggctcaaaaatg |
5486808 |
T |
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| Q |
125 |
tcatggaagccatgctcgtagggattggaccggaaagattgttatgtgaaaggtcaagattttctaaatctctttgtgatccaatgttgttgggtatatt |
224 |
Q |
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| T |
5486807 |
taatggaagccatgcttggagggattgaacctgaaatatggttgtgtgaaaggtcaagactttctaaatttgttaatgatccaatgttgttgggtatgtt |
5486708 |
T |
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| Q |
225 |
tccagtgagctgattc |
240 |
Q |
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| T |
5486707 |
cccagttagctgattc |
5486692 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 49 - 240
Target Start/End: Complemental strand, 5491883 - 5491692
Alignment:
| Q |
49 |
aaggtgccaaactgattagctgttggaatttgtccagagaggttgttgtaggacaagttcaaataactcaaggatgtcatggaagccatgctcgtaggga |
148 |
Q |
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||||| ||||||||||||||| |||||| ||||||||| |||||||| |||||||||||| ||||| ||||||||||||||||| | | ||||| |
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| T |
5491883 |
aaggttccaaactgattagctaacggaattcttccagagagattgttgtatgacaagttcaaacgactcagaaatgtcatggaagccatgtttggaggga |
5491784 |
T |
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| Q |
149 |
ttggaccggaaagattgttatgtgaaaggtcaagattttctaaatctctttgtgatccaatgttgttgggtatatttccagtgagctgattc |
240 |
Q |
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| T |
5491783 |
ttggacctgaaagattgttatgtgaaagatcaagatattctaaatctgttagtgatccaatcttgctgggtatattcccagtaagctgattc |
5491692 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 36 - 220
Target Start/End: Complemental strand, 5502710 - 5502526
Alignment:
| Q |
36 |
tgatagctcattgaaggtgccaaactgattagctgttggaatttgtccagagaggttgttgtaggacaagttcaaataactcaaggatgtcatggaagcc |
135 |
Q |
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| T |
5502710 |
tgatggctcattgaaggtggcaaactgattagccatcggaatttgtcccaaaaggttgttgtatgacaagttcaaatgacttaggaatgtcatggaggcc |
5502611 |
T |
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| Q |
136 |
atgctcgtagggattggaccggaaagattgttatgtgaaaggtcaagattttctaaatctctttgtgatccaatgttgttgggta |
220 |
Q |
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| T |
5502610 |
atgctttgaggaatgggacctataagatggttgtgtgaaaggtcaagactttctaaatttgttaataatccaatgttgtttggta |
5502526 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 50 - 240
Target Start/End: Complemental strand, 5497655 - 5497465
Alignment:
| Q |
50 |
aggtgccaaactgattagctgttggaatttgtccagagaggttgttgtaggacaagttcaaataactcaaggatgtcatggaagccatgctcgtagggat |
149 |
Q |
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| T |
5497655 |
aggtggcaaactgattagccagcggaattcttccggaaagattgttgtatgacaagttcaaatgacttaggaatgtcatggaagccatagttggagggat |
5497556 |
T |
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| Q |
150 |
tggaccggaaagattgttatgtgaaaggtcaagattttctaaatctctttgtgatccaatgttgttgggtatatttccagtgagctgattc |
240 |
Q |
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| T |
5497555 |
aggacccgaaaggttgttatgtgaaaagtcaaggttttctaaatcttttagtaatccaatgtcactaggtatattcccagttagctgattc |
5497465 |
T |
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