View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17287_low_65 (Length: 254)
Name: NF17287_low_65
Description: NF17287
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17287_low_65 |
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Alignment Details
Target: chr4 (Bit Score: 100; Significance: 1e-49; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 12 - 127
Target Start/End: Original strand, 28733876 - 28733991
Alignment:
| Q |
12 |
tgagatgaagtgacatttcttagtatagattatcttccattttgattttcttctactttgataggaacaaggattgatcaaaacaaatgtaagtctttgt |
111 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||| || |
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| T |
28733876 |
tgagatgaagtgacatttctcagtatagattatcttccattttgattttcttctactttgataggaacaaggattaatcaaaacaaatgtaaatcttagt |
28733975 |
T |
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| Q |
112 |
cgtcaccaatcttgta |
127 |
Q |
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|||||||||||||||| |
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| T |
28733976 |
cgtcaccaatcttgta |
28733991 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 12 - 127
Target Start/End: Original strand, 28727665 - 28727779
Alignment:
| Q |
12 |
tgagatgaagtgacatttcttagtatagattatcttccattttgattttcttctactttgataggaacaaggattgatcaaaacaaatgtaagtctttgt |
111 |
Q |
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|||||||||||||||||||| |||||||||||||||| ||||| |||||||||||| |||| || ||||||||||||||||||||||||||||||||||| |
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| T |
28727665 |
tgagatgaagtgacatttctcagtatagattatcttcaattttcattttcttctac-ttgagagaaacaaggattgatcaaaacaaatgtaagtctttgt |
28727763 |
T |
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| Q |
112 |
cgtcaccaatcttgta |
127 |
Q |
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||| ||||||||||| |
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| T |
28727764 |
tgtcgccaatcttgta |
28727779 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 220 - 253
Target Start/End: Original strand, 28734088 - 28734121
Alignment:
| Q |
220 |
caggtgagtcaatcatcttcagctcaaactatct |
253 |
Q |
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| T |
28734088 |
caggtgagtcaatcatcttcagctcaaactatct |
28734121 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 220 - 254
Target Start/End: Original strand, 28727874 - 28727908
Alignment:
| Q |
220 |
caggtgagtcaatcatcttcagctcaaactatctc |
254 |
Q |
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| T |
28727874 |
caggtgagtcaatcatcttcaactcaaactatctc |
28727908 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 18 - 115
Target Start/End: Original strand, 32280896 - 32280992
Alignment:
| Q |
18 |
gaagtgacatttcttagtatagattatcttccattttgattttcttctactttgataggaacaaggattgatcaaaacaaatgtaagtctttgtcgtc |
115 |
Q |
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||||| ||||||| | ||||||||||||| |||||| |||| ||||||| | || ||||||||||||| ||||||| ||||| |||||||| ||||| |
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| T |
32280896 |
gaagtaacatttcacaatatagattatctttcattttcatttgcttctacat-gagaggaacaaggattaatcaaaataaatgcaagtctttatcgtc |
32280992 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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