View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17287_low_67 (Length: 251)
Name: NF17287_low_67
Description: NF17287
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17287_low_67 |
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Alignment Details
Target: chr4 (Bit Score: 150; Significance: 2e-79; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 42 - 233
Target Start/End: Original strand, 3983336 - 3983524
Alignment:
| Q |
42 |
ccctaattttagcaatatacgttgacattatcatctaaacatgtgttatatatacttaccatagttcacaaataatgacggtgaaggaggaaaataaata |
141 |
Q |
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| T |
3983336 |
ccctacttttagcaatatacattgacattatcatctaaacatgtattatatatacttacaatagttcacaaataaagacggtgaaggaggaaaataaata |
3983435 |
T |
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| Q |
142 |
caactaacaacaacaaagcaaagagtttacattgaagaaactacaatggcaaacaaaattgttgcattgttgttgttgttagtgtgccttgt |
233 |
Q |
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| T |
3983436 |
caactaacaacaacaaagcaaagagtttacattaaagaaactaaaatggcaaacaaaattgttgca---ttgttgttgttagtgtgccttgt |
3983524 |
T |
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Target: chr5 (Bit Score: 50; Significance: 1e-19; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 88 - 169
Target Start/End: Complemental strand, 742155 - 742074
Alignment:
| Q |
88 |
tatatatacttaccatagttcacaaataatgacggtgaaggaggaaaataaatacaactaacaacaacaaagcaaagagttt |
169 |
Q |
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| T |
742155 |
tatatatacttacaatagttgagaaataatcaccgggaaggtggaaaagaaatacaactaacaacaacaaagcaaagagttt |
742074 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 81 - 169
Target Start/End: Original strand, 796651 - 796741
Alignment:
| Q |
81 |
catgtgttatatatacttaccatagttcaca--aataatgacggtgaaggaggaaaataaatacaactaacaacaacaaagcaaagagttt |
169 |
Q |
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| T |
796651 |
catgtattatatatacttacaatagatcacacaaataattaccgggaaggaggaagattaatacaactaacaacaacaaagcaaagagttt |
796741 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 186 - 233
Target Start/End: Complemental strand, 742044 - 742000
Alignment:
| Q |
186 |
aatggcaaacaaaattgttgcattgttgttgttgttagtgtgccttgt |
233 |
Q |
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| T |
742044 |
aatgggaaacaaaattgttgcattgttgt---tgttagtgtgccttgt |
742000 |
T |
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