View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17287_low_68 (Length: 250)
Name: NF17287_low_68
Description: NF17287
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17287_low_68 |
 | |
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| [»] chr3 (3 HSPs) |
| |
|
| [»] scaffold0350 (1 HSPs) |
| | |
|
| [»] scaffold0016 (1 HSPs) |
| | |
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Alignment Details
Target: chr3 (Bit Score: 200; Significance: 1e-109; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 13 - 250
Target Start/End: Complemental strand, 24833274 - 24833036
Alignment:
| Q |
13 |
aatattagag-cactcttaaaagttacatttattagaaacaatagaaaatagtagatatgtgatatcttaatatagtatatactccaaaaagcgtgaaat |
111 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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|
| T |
24833274 |
aatattagaggcactcttaaaagttacatttattcgaaacaatagaaa-tagtagatatgtgatatcttaatatagtatatagtccaaaaagcgtgaaat |
24833176 |
T |
|
| Q |
112 |
actaacatcaagcgtttgtagtccaacggttaggataattgccttccaagcaatagacccgggttcgactcccggcaaacgcaaatgcatgctttttcat |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||| |
|
|
| T |
24833175 |
actaacatcaagcgtttgtagtccaacggttaggataattgccttccaagcaatagacccgggttcgactcccggcaaacgcaaatacatactttttcat |
24833076 |
T |
|
| Q |
212 |
aattctaattttc-ctccattttctctcacttttaattta |
250 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
24833075 |
aattctaattttctctccattttctctcacttttaattta |
24833036 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 114 - 195
Target Start/End: Complemental strand, 49766643 - 49766562
Alignment:
| Q |
114 |
taacatcaagcgtttgtagtccaacggttaggataattgccttccaagcaatagacccgggttcgactcccggcaaacgcaa |
195 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49766643 |
taacatcaagcgtttgtagtccaacggttaggataattgccttccaagcaatagacccgggttcgactcccggcaaacgcaa |
49766562 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 120 - 194
Target Start/End: Complemental strand, 34575569 - 34575495
Alignment:
| Q |
120 |
caagcgtttgtagtccaacggttaggataattgccttccaagcaatagacccgggttcgactcccggcaaacgca |
194 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34575569 |
caagcgtttgtagtccaacggttaggataattgccttccaagcaatagacccgggttcgactcccggcaaacgca |
34575495 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 76; Significance: 3e-35; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 115 - 194
Target Start/End: Original strand, 35485385 - 35485464
Alignment:
| Q |
115 |
aacatcaagcgtttgtagtccaacggttaggataattgccttccaagcaatagacccgggttcgactcccggcaaacgca |
194 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35485385 |
aacaacaagcgtttgtagtccaacggttaggataattgccttccaagcaatagacccgggttcgactcccggcaaacgca |
35485464 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 115 - 194
Target Start/End: Complemental strand, 36100839 - 36100760
Alignment:
| Q |
115 |
aacatcaagcgtttgtagtccaacggttaggataattgccttccaagcaatagacccgggttcgactcccggcaaacgca |
194 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36100839 |
aacatgaagcgtttgtagtccaacggttaggataattgccttccaagcaatagacccgggttcgactcccggcaaacgca |
36100760 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 121 - 194
Target Start/End: Original strand, 10739710 - 10739783
Alignment:
| Q |
121 |
aagcgtttgtagtccaacggttaggataattgccttccaagcaatagacccgggttcgactcccggcaaacgca |
194 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10739710 |
aagcgtttgtagtccaacggttaggataattgccttccaagcaatagacccgggttcgactcccggcaaacgca |
10739783 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 123 - 194
Target Start/End: Complemental strand, 9819741 - 9819670
Alignment:
| Q |
123 |
gcgtttgtagtccaacggttaggataattgccttccaagcaatagacccgggttcgactcccggcaaacgca |
194 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9819741 |
gcgtttgtagtccaacggttaggataattgccttccaagcaatagacccgggttcgactcccggcaaacgca |
9819670 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 120 - 194
Target Start/End: Complemental strand, 36020557 - 36020483
Alignment:
| Q |
120 |
caagcgtttgtagtccaacggttaggataattgccttccaagcaatagacccgggttcgactcccggcaaacgca |
194 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||| |
|
|
| T |
36020557 |
caagcgtttgtagtccaacggttaggataattgccttccaagcaatagacctgggttcgactcctggcaaacgca |
36020483 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 124 - 194
Target Start/End: Complemental strand, 6057586 - 6057516
Alignment:
| Q |
124 |
cgtttgtagtccaacggttaggataattgccttccaagcaatagacccgggttcgactcccggcaaacgca |
194 |
Q |
| |
|
||||||||||||||| ||| | ||||||||||||||||||||||||| ||||| ||||||||||||||||| |
|
|
| T |
6057586 |
cgtttgtagtccaacagttggaataattgccttccaagcaatagacctgggttagactcccggcaaacgca |
6057516 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 76; Significance: 3e-35; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 120 - 195
Target Start/End: Complemental strand, 5197924 - 5197849
Alignment:
| Q |
120 |
caagcgtttgtagtccaacggttaggataattgccttccaagcaatagacccgggttcgactcccggcaaacgcaa |
195 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5197924 |
caagcgtttgtagtccaacggttaggataattgccttccaagcaatagacccgggttcgactcccggcaaacgcaa |
5197849 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 120 - 194
Target Start/End: Original strand, 41514954 - 41515028
Alignment:
| Q |
120 |
caagcgtttgtagtccaacggttaggataattgccttccaagcaatagacccgggttcgactcccggcaaacgca |
194 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41514954 |
caagcgtttgtagtccaacggttaggataattgccttccaagcaatagacccgggttcgactcccggcaaacgca |
41515028 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 123 - 194
Target Start/End: Complemental strand, 4824307 - 4824236
Alignment:
| Q |
123 |
gcgtttgtagtccaacggttaggataattgccttccaagcaatagacccgggttcgactcccggcaaacgca |
194 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4824307 |
gcgtttgtagtccaacggttaggataattgccttccaagcaatagacccgggttcgactcccggcaaacgca |
4824236 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 123 - 194
Target Start/End: Original strand, 38695375 - 38695446
Alignment:
| Q |
123 |
gcgtttgtagtccaacggttaggataattgccttccaagcaatagacccgggttcgactcccggcaaacgca |
194 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38695375 |
gcgtttgtagtccaacggttaggataattgccttccaagcaatagacccgggttcgactcccggcaaacgca |
38695446 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 120 - 194
Target Start/End: Complemental strand, 41702293 - 41702219
Alignment:
| Q |
120 |
caagcgtttgtagtccaacggttaggataattgccttccaagcaatagacccgggttcgactcccggcaaacgca |
194 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
41702293 |
caagcgtttgtagtccaacggttaggataattgccttccaagcaatagacccgggtttgactcccggcaaacgca |
41702219 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 122 - 194
Target Start/End: Original strand, 615420 - 615492
Alignment:
| Q |
122 |
agcgtttgtagtccaacggttaggataattgccttccaagcaatagacccgggttcgactcccggcaaacgca |
194 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
615420 |
agcgtttgtagtccaacggttaggataattgccttccaagcaatagatccgggttcgactcccggcaaacgca |
615492 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 76; Significance: 3e-35; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 115 - 194
Target Start/End: Original strand, 23775158 - 23775237
Alignment:
| Q |
115 |
aacatcaagcgtttgtagtccaacggttaggataattgccttccaagcaatagacccgggttcgactcccggcaaacgca |
194 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23775158 |
aacaacaagcgtttgtagtccaacggttaggataattgccttccaagcaatagacccgggttcgactcccggcaaacgca |
23775237 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 123 - 194
Target Start/End: Original strand, 43467536 - 43467607
Alignment:
| Q |
123 |
gcgtttgtagtccaacggttaggataattgccttccaagcaatagacccgggttcgactcccggcaaacgca |
194 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
43467536 |
gcgtttgtagtccaacggttaggataattgccttccaagcaatagacctgggttcgactcccggcaaacgca |
43467607 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 126 - 192
Target Start/End: Original strand, 43466644 - 43466710
Alignment:
| Q |
126 |
tttgtagtccaacggttaggataattgccttccaagcaatagacccgggttcgactcccggcaaacg |
192 |
Q |
| |
|
|||||||||||| ||||||||||||||||||| ||||| ||||||| ||||||| | ||| |||||| |
|
|
| T |
43466644 |
tttgtagtccaatggttaggataattgccttctaagcattagacccaggttcgatttccgacaaacg |
43466710 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 75; Significance: 1e-34; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 120 - 194
Target Start/End: Complemental strand, 42461301 - 42461227
Alignment:
| Q |
120 |
caagcgtttgtagtccaacggttaggataattgccttccaagcaatagacccgggttcgactcccggcaaacgca |
194 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42461301 |
caagcgtttgtagtccaacggttaggataattgccttccaagcaatagacccgggttcgactcccggcaaacgca |
42461227 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 122 - 195
Target Start/End: Complemental strand, 12694584 - 12694511
Alignment:
| Q |
122 |
agcgtttgtagtccaacggttaggataattgccttccaagcaatagacccgggttcgactcccggcaaacgcaa |
195 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12694584 |
agcgtttgtagtccaacggttaggataattgccttccaagcaatagacccgggttcgactcccggcaaacgcaa |
12694511 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 125 - 194
Target Start/End: Complemental strand, 12694285 - 12694216
Alignment:
| Q |
125 |
gtttgtagtccaacggttaggataattgccttccaagcaatagacccgggttcgactcccggcaaacgca |
194 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12694285 |
gtttgtagtccaacggttaggataattgccttccaagcaatagacccgggttcgactcccggcaaacgca |
12694216 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 74; Significance: 5e-34; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 121 - 194
Target Start/End: Original strand, 30514361 - 30514434
Alignment:
| Q |
121 |
aagcgtttgtagtccaacggttaggataattgccttccaagcaatagacccgggttcgactcccggcaaacgca |
194 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30514361 |
aagcgtttgtagtccaacggttaggataattgccttccaagcaatagacccgggttcgactcccggcaaacgca |
30514434 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 123 - 194
Target Start/End: Complemental strand, 38872650 - 38872579
Alignment:
| Q |
123 |
gcgtttgtagtccaacggttaggataattgccttccaagcaatagacccgggttcgactcccggcaaacgca |
194 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38872650 |
gcgtttgtagtccaacggttaggataattgccttccaagcaatagacccgggttcgactcccggcaaacgca |
38872579 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0350 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: scaffold0350
Description:
Target: scaffold0350; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 124 - 194
Target Start/End: Complemental strand, 17011 - 16941
Alignment:
| Q |
124 |
cgtttgtagtccaacggttaggataattgccttccaagcaatagacccgggttcgactcccggcaaacgca |
194 |
Q |
| |
|
||||||||||||||| ||| | ||||||||||||||||||||||||| ||||| ||||||||||||||||| |
|
|
| T |
17011 |
cgtttgtagtccaacagttggaataattgccttccaagcaatagacctgggttagactcccggcaaacgca |
16941 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0016 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0016
Description:
Target: scaffold0016; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 141 - 197
Target Start/End: Complemental strand, 38554 - 38498
Alignment:
| Q |
141 |
ttaggataattgccttccaagcaatagacccgggttcgactcccggcaaacgcaaat |
197 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||| |||||| | ||| |||||| |
|
|
| T |
38554 |
ttaggacaattgccttccaagcaatagacccgggttcaactcccagaaaatgcaaat |
38498 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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