View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17287_low_69 (Length: 250)

Name: NF17287_low_69
Description: NF17287
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17287_low_69
NF17287_low_69
[»] chr2 (4 HSPs)
chr2 (13-244)||(35679848-35680077)
chr2 (24-225)||(13124122-13124322)
chr2 (164-222)||(15422518-15422576)
chr2 (173-239)||(27754884-27754954)
[»] chr4 (2 HSPs)
chr4 (24-213)||(19812347-19812536)
chr4 (24-212)||(19829185-19829374)
[»] chr1 (1 HSPs)
chr1 (44-225)||(51393843-51394026)
[»] chr5 (2 HSPs)
chr5 (25-225)||(32554314-32554513)
chr5 (177-222)||(24209504-24209549)
[»] scaffold0088 (1 HSPs)
scaffold0088 (97-225)||(42669-42797)
[»] chr3 (2 HSPs)
chr3 (174-222)||(7630972-7631020)
chr3 (192-225)||(1696089-1696122)


Alignment Details
Target: chr2 (Bit Score: 180; Significance: 3e-97; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 13 - 244
Target Start/End: Original strand, 35679848 - 35680077
Alignment:
Q  13 aatatcccactgatcctcgtacggtctatagatgacatcaacattcatcatcagatcaatcaggcctcggtaatgtcctggattagaatggcccctggac 112  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  35679848 aatatcccactgatcctcgtacggtctatagatgacatcaacattcatcatcagatcaatcaggcctcggtaatgtcctggattagaatggcccctgga- 35679946  T
Q  113 gtttccatgtggaagcaagcgggtcaacatgatcgtagtcctgcacaagagtcctctgaaagagcttcttgaattgctccaaaactcatccctacaaaca 212  Q
         |||||| |||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||    
T  35679947 -----catgtgaaagcaagcaggtcaacatgatcgtagtcctgcacaagagtcctctgaaatagcttcttgaagtgctccaaaactcatccctacaaaca 35680041  T
Q  213 caaagagacacaa----atcaacacaagtatcatac 244  Q
    |||||||||||||    |||||||||||||||||||    
T  35680042 caaagagacacaataatatcaacacaagtatcatac 35680077  T

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Target: chr2; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 24 - 225
Target Start/End: Complemental strand, 13124322 - 13124122
Alignment:
Q  24 gatcctcgtacggtctatagatgacatcaacattcatcatcagatcaatcaggcctcggtaatgtcctggattagaatggcccctggacgtttccatgtg 123  Q
    ||||||||||||| ||  |||||||||||||||||| |||||||| ||| ||||||||||| ||||  |||| ||||  |||| |||  |||||||| ||    
T  13124322 gatcctcgtacggccttcagatgacatcaacattcaccatcagataaatgaggcctcggtagtgtctaggatcagaaaagcccttggg-gtttccatctg 13124224  T
Q  124 gaagcaagcgggtcaacatgatcgtagtcctgcacaagagtcctctgaaagagcttcttgaattgctccaaaactcatccctacaaacacaaagagacac 223  Q
    | | || |||| | | ||   || ||||||| ||||||  || ||  |||||||||  |||| |||||||||||||||||||||||| ||||||||||||    
T  13124223 gcaacatgcggctgagcacattcatagtccttcacaagcttcttcgaaaagagctttatgaagtgctccaaaactcatccctacaaatacaaagagacac 13124124  T
Q  224 aa 225  Q
    ||    
T  13124123 aa 13124122  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 164 - 222
Target Start/End: Original strand, 15422518 - 15422576
Alignment:
Q  164 tcctctgaaagagcttcttgaattgctccaaaactcatccctacaaacacaaagagaca 222  Q
    ||||| ||| || ||||||||| |||| |||||||||||| | ||||||||||||||||    
T  15422518 tcctcagaacgatcttcttgaagtgcttcaaaactcatccttgcaaacacaaagagaca 15422576  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 173 - 239
Target Start/End: Original strand, 27754884 - 27754954
Alignment:
Q  173 agagcttcttgaattgctccaaaactcatccctacaaacacaaagagacacaa----atcaacacaagtat 239  Q
    |||||||||| || ||||||| ||||||| |||||||||||||| | ||||||    ||||||||||||||    
T  27754884 agagcttcttaaagtgctccataactcatgcctacaaacacaaacaaacacaacaatatcaacacaagtat 27754954  T

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Target: chr4 (Bit Score: 74; Significance: 5e-34; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 24 - 213
Target Start/End: Complemental strand, 19812536 - 19812347
Alignment:
Q  24 gatcctcgtacggtctatagatgacatcaacattcatcatcagatcaatcaggcctcggtaatgtcctggattagaatggcccctggacgtttccatgtg 123  Q
    ||||||||||||   | ||||||||||||||||||| ||| |||||||| | |||||  || ||||| |||||||||||||||||||  |||||||| |     
T  19812536 gatcctcgtacgacgtctagatgacatcaacattcaccattagatcaatgaagcctcaatagtgtccaggattagaatggcccctgggggtttccatctt 19812437  T
Q  124 gaagcaagcgggtcaacatgatcgtagtcctgcacaagagtcctctgaaagagcttcttgaattgctccaaaactcatccctacaaacac 213  Q
    ||||||||||| | | || |||||||||||||||||||  ||||| |||||||||| | ||| || |||||||| |||||||| ||||||    
T  19812436 gaagcaagcggctgagcacgatcgtagtcctgcacaagcttcctcggaaagagcttttggaaatggtccaaaacccatccctagaaacac 19812347  T

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Target: chr4; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 24 - 212
Target Start/End: Complemental strand, 19829374 - 19829185
Alignment:
Q  24 gatcctcgtacggtctatagatgacatcaacattcatcatcagatcaatcaggcctcggtaatgtcctggattagaatggcccct-ggacgtttccatgt 122  Q
    ||||||||||||  || ||||||||||||||||||| ||| |||||||| | |||||  || |||||  |||||||||||||||| ||  |||||||| |    
T  19829374 gatcctcgtacgccctctagatgacatcaacattcaccattagatcaatgaagcctcaatagtgtccatgattagaatggcccctggggggtttccatct 19829275  T
Q  123 ggaagcaagcgggtcaacatgatcgtagtcctgcacaagagtcctctgaaagagcttcttgaattgctccaaaactcatccctacaaaca 212  Q
    |||||||||||| | | || |||||||||||||||||||  |||||  |||||||||   ||| || |||||||| |||||||| |||||    
T  19829274 ggaagcaagcggttgagcacgatcgtagtcctgcacaagcttcctcgaaaagagctttcggaagtggtccaaaacccatccctagaaaca 19829185  T

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Target: chr1 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 44 - 225
Target Start/End: Complemental strand, 51394026 - 51393843
Alignment:
Q  44 atgacatcaacattcatcatcagatcaatcaggcctcggtaatgtcctggattagaatggcccctggac--gtttccatgtggaagcaagcgggtcaaca 141  Q
    |||||||||||||||| ||| |||||||| ||||||||||| |||||  ||| |||||||||| ||||   |||||||| |||||||||| || | | ||    
T  51394026 atgacatcaacattcaccatgagatcaatgaggcctcggtagtgtccatgatcagaatggcccatggagaggtttccatctggaagcaagaggctgagca 51393927  T
Q  142 tgatcgtagtcctgcacaagagtcctctgaaagagcttcttgaattgctccaaaactcatccctacaaacacaaagagacacaa 225  Q
    |||| |||||||| ||||||  ||||| |||||| ||||  ||| ||||| |||| ||||||||||||||||||||||||||||    
T  51393926 tgattgtagtcctacacaagcttcctcggaaagaccttcaggaagtgctctaaaattcatccctacaaacacaaagagacacaa 51393843  T

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Target: chr5 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 25 - 225
Target Start/End: Original strand, 32554314 - 32554513
Alignment:
Q  25 atcctcgtacggtctatagatgacatcaacattcatcatcagatcaatcaggcctcggtaatgtcctggattagaatggcccctggacgtttccatgtgg 124  Q
    |||||||||||  || ||||  ||||| ||||||| |||||||||||| |||| ||  ||||||   |||| |||||||||||| |  | |||| | |||    
T  32554314 atcctcgtacgacctctagagtacatcgacattcaccatcagatcaatgaggcatcattaatgtgaaggatcagaatggccccttgggggttccttctgg 32554413  T
Q  125 aagcaagcgggtcaacatgatcgtagtcctgcacaagagtcctctgaaagagcttcttgaattgctccaaaactcatccctacaaacacaaagagacaca 224  Q
      |||||| ||||  || |||||||||| |  |||||  ||||| |||||||||||  || | |||||||||| |||||||||||||||||| |||||||    
T  32554414 cggcaagcaggtccgcacgatcgtagtctttaacaagcttcctcggaaagagcttcaggagt-gctccaaaacccatccctacaaacacaaatagacaca 32554512  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 177 - 222
Target Start/End: Original strand, 24209504 - 24209549
Alignment:
Q  177 cttcttgaattgctccaaaactcatccctacaaacacaaagagaca 222  Q
    ||||||||| | | ||||||||||||||||||||||||||||||||    
T  24209504 cttcttgaagtacgccaaaactcatccctacaaacacaaagagaca 24209549  T

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Target: scaffold0088 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0088
Description:

Target: scaffold0088; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 97 - 225
Target Start/End: Complemental strand, 42797 - 42669
Alignment:
Q  97 agaatggcccctggacgtttccatgtggaagcaagcgggtcaacatgatcgtagtcctgcacaagagtcctctgaaagagcttcttgaattgctccaaaa 196  Q
    |||||||||||| |  |||||||| ||||||||||||| | | || |||  ||||||| ||||||  |||||  |||||||||   ||| ||||||||||    
T  42797 agaatggcccctcggagtttccatttggaagcaagcggttgagcacgatattagtccttcacaagcttcctcgtaaagagcttaaagaagtgctccaaaa 42698  T
Q  197 ctcatccctacaaacacaaagagacacaa 225  Q
    |  ||| ||||||||||||||| ||||||    
T  42697 cctatctctacaaacacaaagacacacaa 42669  T

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Target: chr3 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 174 - 222
Target Start/End: Complemental strand, 7631020 - 7630972
Alignment:
Q  174 gagcttcttgaattgctccaaaactcatccctacaaacacaaagagaca 222  Q
    ||||| ||||| |||| ||||||||||||||||||||||||||||||||    
T  7631020 gagctgcttgagttgcgccaaaactcatccctacaaacacaaagagaca 7630972  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 192 - 225
Target Start/End: Complemental strand, 1696122 - 1696089
Alignment:
Q  192 caaaactcatccctacaaacacaaagagacacaa 225  Q
    ||||||||||||||||||||||||||||||||||    
T  1696122 caaaactcatccctacaaacacaaagagacacaa 1696089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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