View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17287_low_7 (Length: 566)

Name: NF17287_low_7
Description: NF17287
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17287_low_7
NF17287_low_7
[»] chr1 (3 HSPs)
chr1 (303-550)||(47288772-47289018)
chr1 (12-206)||(47289106-47289283)
chr1 (264-300)||(47289012-47289048)
[»] chr4 (4 HSPs)
chr4 (343-522)||(15664320-15664499)
chr4 (420-513)||(29672256-29672349)
chr4 (344-485)||(30785512-30785653)
chr4 (502-548)||(15664511-15664556)
[»] chr2 (4 HSPs)
chr2 (371-544)||(9932724-9932897)
chr2 (367-513)||(29150357-29150503)
chr2 (447-489)||(28148472-28148514)
chr2 (452-488)||(6134374-6134410)
[»] scaffold0179 (2 HSPs)
scaffold0179 (264-335)||(33065-33136)
scaffold0179 (123-206)||(33196-33283)
[»] chr7 (1 HSPs)
chr7 (378-511)||(42675323-42675455)
[»] chr3 (1 HSPs)
chr3 (420-488)||(43487262-43487330)
[»] chr5 (2 HSPs)
chr5 (400-490)||(33318283-33318373)
chr5 (423-483)||(5033548-5033608)
[»] chr8 (2 HSPs)
chr8 (367-483)||(2543098-2543213)
chr8 (367-467)||(2533533-2533632)


Alignment Details
Target: chr1 (Bit Score: 216; Significance: 1e-118; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 303 - 550
Target Start/End: Complemental strand, 47289018 - 47288772
Alignment:
Q  303 gtgtgtatggtttaaaaggggtgtctacctaaaattatccttgtttatgggatcaaaattttcgaaataagacataatacatctatcaaacaaattaata 402  Q
    |||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||    
T  47289018 gtgtgtatggttcaaaaagggtgtctacctaaaattatccttgtttatgggatcaaaattttcgaaataaggtataatacatctatcaaacaaattaata 47288919  T
Q  403 tcttttgactttctcacttctactaatttttgacaaataataacatttgtggtagctaaatatattttattggggtagctaattacaagatatgccaaat 502  Q
    ||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  47288918 tcttttgactttctcacttctactaatttttgacaaataagcacatttgtggtagctaaatatattttatt-gggtagctaattacaagatatgccaaat 47288820  T
Q  503 tattcaaataagagtaaaaagaatggggcagccaaagctactgcatag 550  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  47288819 tattcaaataagagtaaaaagaatggggcagccaaagctactgcatag 47288772  T

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Target: chr1; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 12 - 206
Target Start/End: Complemental strand, 47289283 - 47289106
Alignment:
Q  12 agagattgagttgtcgacgcaagtgagggaatacggcgacgaatgagaccaatgtccatgaggaaacgaagagagtgagaggagatcgagcggttgggag 111  Q
    ||||||||||||||||||||||||||||||| ||||||  ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  47289283 agagattgagttgtcgacgcaagtgagggaacacggcggtgaatgagaccaatgtccatgaggaaacgaagagagtgggaggagatcgagcggttgggag 47289184  T
Q  112 gagacaaagcgagttggagagacaacgacggtgggcttcat-cccggacttagggaaagagggatggaagtgagagcaagggcacaaagtttcaga 206  Q
    ||||||||                  |||| |||||||||| |||| |||||||||||||||||| ||| ||||||||||||||||||||||||||    
T  47289183 gagacaaa------------------gacgatgggcttcatccccgaacttagggaaagagggatcgaactgagagcaagggcacaaagtttcaga 47289106  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 264 - 300
Target Start/End: Complemental strand, 47289048 - 47289012
Alignment:
Q  264 tccactatggcaaatgatgccacatgggatgtgtgta 300  Q
    ||||||||| ||||||||||||||| |||||||||||    
T  47289048 tccactatgacaaatgatgccacataggatgtgtgta 47289012  T

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Target: chr4 (Bit Score: 84; Significance: 1e-39; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 343 - 522
Target Start/End: Original strand, 15664320 - 15664499
Alignment:
Q  343 ttgtttatgggatcaaaattttcgaaataagacataatacatctatcaaacaaattaatatcttttgactttctcacttctactaatttttgacaaataa 442  Q
    |||||||||||||||||| |||  ||||||||||||| ||||||||||||||| | |||||||||||| ||||  | ||||||||  |||||||||||||    
T  15664320 ttgtttatgggatcaaaagttttaaaataagacataaaacatctatcaaacaagtaaatatcttttgattttcctatttctactagcttttgacaaataa 15664419  T
Q  443 taacatttgtggtagctaaatatattttattggggtagctaattacaagatatgccaaattattcaaataagagtaaaaa 522  Q
       |||||| |||||||||||||||||||||| ||||||||| ||||| ||| |  || |||||||||||| ||||||||    
T  15664420 actcatttgcggtagctaaatatattttattgtggtagctaactacaaaatagggtaagttattcaaataaaagtaaaaa 15664499  T

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Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 420 - 513
Target Start/End: Original strand, 29672256 - 29672349
Alignment:
Q  420 ttctactaatttttgacaaataataacatttgtggtagctaaatatattttattggggtagctaattacaagatatgccaaattattcaaataa 513  Q
    ||||| || ||||| ||||||||   |||||||||||||  ||||||| |||||||||||||||||||||| |||| | || | ||||||||||    
T  29672256 ttctaatagtttttaacaaataaactcatttgtggtagcataatatatattattggggtagctaattacaaaatatactaactaattcaaataa 29672349  T

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Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 344 - 485
Target Start/End: Original strand, 30785512 - 30785653
Alignment:
Q  344 tgtttatgggatcaaaattttcgaaataagacataatacatctatcaaacaaattaatatcttttgactttctcacttctactaatttttgacaaataat 443  Q
    |||||| | |||||||| | || |||||| ||  |||| |||||| |||||| | ||||| ||||| |||||  | ||||||||||||||||||||||      
T  30785512 tgtttaagagatcaaaagtgtcaaaataatacggaatatatctattaaacaagtgaatatattttggctttcctatttctactaatttttgacaaataga 30785611  T
Q  444 aacatttgtggtagctaaatatattttattggggtagctaat 485  Q
        |||  ||||||||||||||| |||||||||||||||||    
T  30785612 tttttttacggtagctaaatatatattattggggtagctaat 30785653  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 502 - 548
Target Start/End: Original strand, 15664511 - 15664556
Alignment:
Q  502 ttattcaaataagagtaaaaagaatggggcagccaaagctactgcat 548  Q
    |||||||||||| |||||||| ||||||| |||||||||||||||||    
T  15664511 ttattcaaataaaagtaaaaa-aatggggtagccaaagctactgcat 15664556  T

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Target: chr2 (Bit Score: 58; Significance: 4e-24; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 371 - 544
Target Start/End: Complemental strand, 9932897 - 9932724
Alignment:
Q  371 aagacataatacatctatcaaacaaattaatatcttttgactttctcacttctactaatttttgacaaataataacatttgtggtagctaaatatatttt 470  Q
    ||||||||||||||| ||||||||| | ||||||  ||||||||   | ||| |  | | ||||| ||||||   |||||| ||||| ||||| ||||||    
T  9932897 aagacataatacatccatcaaacaagtgaatatcacttgacttttctatttccagaagtgtttgagaaataaactcatttgcggtagttaaatgtatttt 9932798  T
Q  471 attggggtagctaattacaagatatgccaaattattcaaataagagtaaaaagaatggggcagccaaagctact 544  Q
    ||||||||| |||||||||| ||||||||| |||||||||| | ||| |||| ||||||| |||||||||||||    
T  9932797 attggggtaactaattacaaaatatgccaagttattcaaatcaaagtgaaaaaaatggggtagccaaagctact 9932724  T

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Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 367 - 513
Target Start/End: Complemental strand, 29150503 - 29150357
Alignment:
Q  367 aaataagacataatacatctatcaaacaaattaatatcttttgactttctcacttctactaatttttgacaaataataacatttgtggtagctaaatata 466  Q
    |||||||||  |||||||||||||||||| |  ||||||||   |||||  | |||||||| |||||||||| |||   ||||||||| ||||||  | |    
T  29150503 aaataagacgaaatacatctatcaaacaagtggatatctttaagctttcctatttctactagtttttgacaattaaactcatttgtggaagctaagcaga 29150404  T
Q  467 ttttattggggtagctaattacaagatatgccaaattattcaaataa 513  Q
    | ||| |||||||||||||| ||| |||| | |||||||||||||||    
T  29150403 tattactggggtagctaattgcaaaatatactaaattattcaaataa 29150357  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 447 - 489
Target Start/End: Complemental strand, 28148514 - 28148472
Alignment:
Q  447 atttgtggtagctaaatatattttattggggtagctaattaca 489  Q
    ||||| ||||||||||||| | |||||||||||||||||||||    
T  28148514 atttgcggtagctaaatatttattattggggtagctaattaca 28148472  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 452 - 488
Target Start/End: Original strand, 6134374 - 6134410
Alignment:
Q  452 tggtagctaaatatattttattggggtagctaattac 488  Q
    ||||||||||||||||  |||||||||||||||||||    
T  6134374 tggtagctaaatatatactattggggtagctaattac 6134410  T

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Target: scaffold0179 (Bit Score: 48; Significance: 4e-18; HSPs: 2)
Name: scaffold0179
Description:

Target: scaffold0179; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 264 - 335
Target Start/End: Complemental strand, 33136 - 33065
Alignment:
Q  264 tccactatggcaaatgatgccacatgggatgtgtgtagagtgtgtatggtttaaaaggggtgtctacctaaa 335  Q
    ||||||||| |||||||||||||||||||||||||||  |||||||||||| ||||||| ||||||| ||||    
T  33136 tccactatgacaaatgatgccacatgggatgtgtgtatggtgtgtatggttcaaaagggatgtctacgtaaa 33065  T

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Target: scaffold0179; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 123 - 206
Target Start/End: Complemental strand, 33283 - 33196
Alignment:
Q  123 agttggagagacaacgacggtgggcttcat-cccggacttagggaaagagggatggaagtgagagcaag---ggcacaaagtttcaga 206  Q
    |||||||||||||| ||||||||||||||| |||| | ||||||||||||||||||||  |||| ||||   ||||||||||||||||    
T  33283 agttggagagacaatgacggtgggcttcatccccgaatttagggaaagagggatggaaccgagaacaagggaggcacaaagtttcaga 33196  T

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Target: chr7 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 378 - 511
Target Start/End: Original strand, 42675323 - 42675455
Alignment:
Q  378 aatacatctatcaaacaaattaatatcttttgactttctcacttctactaatttttgacaaataataacatttgtggtagctaaatatattttattgggg 477  Q
    ||||| |||||||||||| |  ||||||||||||||| | | |||||||| ||||||||||||||   || | | ||||| ||||||||| | |||||||    
T  42675323 aatacttctatcaaacaagtagatatcttttgactttttaatttctactagtttttgacaaataaactca-taggggtagttaaatatatatgattgggg 42675421  T
Q  478 tagctaattacaagatatgccaaattattcaaat 511  Q
    |||||||||| || |||||| ||  |||||||||    
T  42675422 tagctaattataaaatatgctaacctattcaaat 42675455  T

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Target: chr3 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 420 - 488
Target Start/End: Original strand, 43487262 - 43487330
Alignment:
Q  420 ttctactaatttttgacaaataataacatttgtggtagctaaatatattttattggggtagctaattac 488  Q
    ||||||||||||| ||||||||||  |||||||||||||||||||||| |||||||  |||| ||||||    
T  43487262 ttctactaattttcgacaaataatctcatttgtggtagctaaatatatattattggaatagcaaattac 43487330  T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 400 - 490
Target Start/End: Original strand, 33318283 - 33318373
Alignment:
Q  400 atatcttttgactttctcacttctactaatttttgacaaataataacatttgtggtagctaaatatattttattggggtagctaattacaa 490  Q
    |||| |||||||||||| | ||| |||| ||||||||||||||   ||||| ||||||| |||||||| |||| | |||||||||||||||    
T  33318283 atattttttgactttcttatttcaactagtttttgacaaataaattcatttatggtagcaaaatatatattatcgaggtagctaattacaa 33318373  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 423 - 483
Target Start/End: Complemental strand, 5033608 - 5033548
Alignment:
Q  423 tactaatttttgacaaataataacatttgtggtagctaaatatattttattggggtagcta 483  Q
    |||||| ||| |||||||||   |||||||||||  ||||||||| |||||||||||||||    
T  5033608 tactaaatttcgacaaataaactcatttgtggtatttaaatatatattattggggtagcta 5033548  T

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Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 367 - 483
Target Start/End: Original strand, 2543098 - 2543213
Alignment:
Q  367 aaataagacataatacatctatcaaacaaattaatatcttttgactttctcacttctactaatttttgacaaataataacatttgtggtagctaaatata 466  Q
    |||||||||| |||||||||||||||||| |  || |||||||||||||| | || ||||| ||||||| ||||||   | ||||||||| ||| |||||    
T  2543098 aaataagacaaaatacatctatcaaacaagtagatgtcttttgactttctta-ttttactagtttttgataaataaattcgtttgtggtaactacatata 2543196  T
Q  467 ttttattggggtagcta 483  Q
      |||||| ||||||||    
T  2543197 cattattgaggtagcta 2543213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 367 - 467
Target Start/End: Original strand, 2533533 - 2533632
Alignment:
Q  367 aaataagacataatacatctatcaaacaaattaatatcttttgactttctcacttctactaatttttgacaaataataacatttgtggtagctaaatata 466  Q
    |||||| ||| |||||||||||||||||| |  || ||||| |||||||| | || ||||| ||||||| ||||||   ||||||||||| ||| |||||    
T  2533533 aaataaaacaaaatacatctatcaaacaagtagatgtcttt-gactttcttatttttactagtttttgataaataaattcatttgtggtaactatatata 2533631  T

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