View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17287_low_73 (Length: 246)

Name: NF17287_low_73
Description: NF17287
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17287_low_73
NF17287_low_73
[»] chr6 (10 HSPs)
chr6 (1-229)||(6921305-6921533)
chr6 (17-229)||(6935189-6935401)
chr6 (11-226)||(6947845-6948060)
chr6 (11-229)||(6954484-6954702)
chr6 (1-229)||(6942922-6943137)
chr6 (46-229)||(20770537-20770720)
chr6 (36-105)||(17369675-17369744)
chr6 (50-120)||(14749393-14749463)
chr6 (48-126)||(24254428-24254506)
chr6 (52-116)||(24950150-24950214)
[»] chr7 (55 HSPs)
chr7 (21-226)||(1985930-1986135)
chr7 (36-169)||(18514777-18514910)
chr7 (46-171)||(13416911-13417036)
chr7 (36-117)||(14076677-14076758)
chr7 (36-117)||(14386705-14386786)
chr7 (36-169)||(15571885-15572018)
chr7 (34-164)||(19344563-19344693)
chr7 (46-115)||(660847-660916)
chr7 (47-142)||(19604464-19604559)
chr7 (53-126)||(22021382-22021455)
chr7 (46-154)||(6864807-6864914)
chr7 (47-131)||(29867221-29867305)
chr7 (48-122)||(22028622-22028696)
chr7 (46-116)||(29454103-29454173)
chr7 (47-105)||(29881267-29881325)
chr7 (48-116)||(12819918-12819986)
chr7 (48-120)||(19351071-19351143)
chr7 (46-142)||(20058057-20058153)
chr7 (46-122)||(20352089-20352165)
chr7 (46-122)||(22063636-22063712)
chr7 (46-142)||(22100467-22100563)
chr7 (46-110)||(29874517-29874581)
chr7 (33-116)||(29921980-29922063)
chr7 (69-126)||(9807814-9807871)
chr7 (47-120)||(18952906-18952979)
chr7 (47-120)||(18982953-18983026)
chr7 (47-120)||(18997599-18997672)
chr7 (47-123)||(20338917-20338993)
chr7 (38-117)||(22070110-22070189)
chr7 (50-141)||(36263028-36263119)
chr7 (183-229)||(13417060-13417106)
chr7 (48-126)||(19325987-19326065)
chr7 (46-116)||(19637217-19637287)
chr7 (36-122)||(20374493-20374579)
chr7 (46-116)||(29859454-29859524)
chr7 (47-116)||(29106814-29106883)
chr7 (46-131)||(29431001-29431086)
chr7 (53-122)||(29445663-29445732)
chr7 (62-158)||(15443922-15444018)
chr7 (48-120)||(19357906-19357978)
chr7 (48-116)||(19722018-19722086)
chr7 (66-122)||(22080862-22080918)
chr7 (48-116)||(29899374-29899442)
chr7 (46-105)||(19645630-19645689)
chr7 (50-141)||(36260228-36260319)
chr7 (50-124)||(13888098-13888172)
chr7 (48-94)||(19374778-19374824)
chr7 (50-116)||(21218712-21218778)
chr7 (36-114)||(24002201-24002279)
chr7 (62-159)||(26256732-26256829)
chr7 (193-229)||(14076582-14076618)
chr7 (193-229)||(14386610-14386646)
chr7 (62-158)||(15508704-15508800)
chr7 (69-105)||(20133340-20133376)
chr7 (69-105)||(20140841-20140877)
[»] chr4 (18 HSPs)
chr4 (37-159)||(53774797-53774919)
chr4 (46-159)||(3565701-3565814)
chr4 (46-122)||(11970982-11971058)
chr4 (46-122)||(3557720-3557796)
chr4 (46-122)||(11981683-11981759)
chr4 (46-154)||(3560958-3561066)
chr4 (46-159)||(8443454-8443567)
chr4 (50-123)||(837769-837842)
chr4 (51-117)||(35767017-35767083)
chr4 (45-122)||(6372439-6372516)
chr4 (47-116)||(53430100-53430169)
chr4 (46-110)||(1686285-1686349)
chr4 (47-122)||(6392815-6392893)
chr4 (48-92)||(53790577-53790621)
chr4 (46-105)||(6113090-6113149)
chr4 (84-159)||(10475164-10475239)
chr4 (86-159)||(10464226-10464299)
chr4 (40-116)||(10468042-10468118)
[»] chr2 (8 HSPs)
chr2 (36-142)||(14514874-14514980)
chr2 (48-122)||(18908811-18908885)
chr2 (48-122)||(18920767-18920841)
chr2 (48-121)||(18913559-18913632)
chr2 (46-121)||(554471-554546)
chr2 (62-117)||(20975557-20975612)
chr2 (62-116)||(25698507-25698561)
chr2 (46-118)||(25377072-25377144)
[»] chr5 (7 HSPs)
chr5 (48-159)||(29647633-29647744)
chr5 (36-168)||(18964820-18964952)
chr5 (48-122)||(29597554-29597628)
chr5 (48-127)||(29642348-29642427)
chr5 (47-122)||(24330900-24330975)
chr5 (65-114)||(23086784-23086833)
chr5 (53-121)||(28763912-28763980)
[»] chr1 (9 HSPs)
chr1 (45-116)||(4570927-4570998)
chr1 (45-117)||(50645484-50645556)
chr1 (47-122)||(21855384-21855459)
chr1 (47-113)||(4014966-4015032)
chr1 (46-116)||(39379061-39379131)
chr1 (47-116)||(10218985-10219054)
chr1 (46-111)||(15961233-15961298)
chr1 (45-116)||(17560772-17560843)
chr1 (47-109)||(4016773-4016835)
[»] chr3 (4 HSPs)
chr3 (46-110)||(3625740-3625804)
chr3 (46-118)||(25901279-25901351)
chr3 (46-118)||(25915297-25915369)
chr3 (65-121)||(3837904-3837960)
[»] scaffold0354 (1 HSPs)
scaffold0354 (36-105)||(7474-7543)
[»] scaffold0867 (1 HSPs)
scaffold0867 (46-142)||(4669-4765)
[»] chr8 (7 HSPs)
chr8 (36-134)||(27618473-27618571)
chr8 (62-114)||(29390288-29390340)
chr8 (82-122)||(42846461-42846501)
chr8 (62-114)||(11338592-11338644)
chr8 (62-114)||(11339435-11339487)
chr8 (62-114)||(11345117-11345169)
chr8 (47-91)||(29157073-29157117)
[»] scaffold0242 (2 HSPs)
scaffold0242 (53-122)||(13737-13806)
scaffold0242 (53-122)||(22572-22641)
[»] scaffold0267 (1 HSPs)
scaffold0267 (65-121)||(13385-13441)


Alignment Details
Target: chr6 (Bit Score: 221; Significance: 1e-122; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 6921305 - 6921533
Alignment:
Q  1 atcattatataactcctgagttttaaaatcgtttagaagattcgtataactaattttaaggaattgagtccaagattcttcaactccaaattccttcatt 100  Q
    ||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6921305 atcattatataactccttagttttaaaattgtttagaagattcgtataactaattttaaggaattgagtccaagattcttcaactccaaattccttcatt 6921404  T
Q  101 tgccagataacaaaatgggttttcttagaatcataagaaaaatagaggcaatccatcaatacagaaagagttggaacattatgtagctcttcatcacaac 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6921405 tgccagataacaaaatgggttttcttagaatcataagaaaaatagaggcaatccatcaatacagaaagagttggaacattatgtagctcttcatcacaac 6921504  T
Q  201 atcgagggagcaacaattgtgtatatgtc 229  Q
    |||||||||||||||||||||||||||||    
T  6921505 atcgagggagcaacaattgtgtatatgtc 6921533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 17 - 229
Target Start/End: Original strand, 6935189 - 6935401
Alignment:
Q  17 tgagttttaaaatcgtttagaagattcgtataactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaat 116  Q
    |||||||||||||| | | ||||||| |||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||| |||||| |||    
T  6935189 tgagttttaaaatcttgttgaagattggtataactaattttaaggaatttagtccaagattcttgaactccaaattccttcatttgccaaataacataat 6935288  T
Q  117 gggttttcttagaatcataagaaaaatagaggcaatccatcaatacagaaagagttggaacattatgtagctcttcatcacaacatcgagggagcaacaa 216  Q
    ||||||||||| |||||||||||||||||||||||||||||||| |||||||||| ||||    ||||||||||||||||||||||||||||||||||||    
T  6935289 gggttttcttaaaatcataagaaaaatagaggcaatccatcaatccagaaagagtaggaaagccatgtagctcttcatcacaacatcgagggagcaacaa 6935388  T
Q  217 ttgtgtatatgtc 229  Q
    || |||| |||||    
T  6935389 ttttgtacatgtc 6935401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 11 - 226
Target Start/End: Original strand, 6947845 - 6948060
Alignment:
Q  11 aactcctgagttttaaaatcgtttagaagattcgtataactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataa 110  Q
    ||||| ||| |||||| ||| ||| ||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||    
T  6947845 aactcatgaattttaatatcttttggaagattcacataactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccaaagaa 6947944  T
Q  111 caaaatgggttttcttagaatcataagaaaaatagaggcaatccatcaatacagaaagagttggaacattatgtagctcttcatcacaacatcgagggag 210  Q
    |||| |||||||||||  ||||||  |||||| | |||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  6947945 caaagtgggttttcttgaaatcatgtgaaaaacaaaggcaatccatcaacacagaaagagttggaacatcatgtagctcttcatcacaacatcgagggag 6948044  T
Q  211 caacaattgtgtatat 226  Q
    ||||||  ||||||||    
T  6948045 caacaaccgtgtatat 6948060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 11 - 229
Target Start/End: Original strand, 6954484 - 6954702
Alignment:
Q  11 aactcctgagttttaaaatcgtttagaagattcgtataactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataa 110  Q
    ||||||||| |||||||||| ||||||||| ||| | ||||||||||||  |||||||||||||||||||||||||||||||||||||||||||| ||||    
T  6954484 aactcctgacttttaaaatcttttagaagaatcggaaaactaattttaatcaattgagtccaagattcttcaactccaaattccttcatttgccaaataa 6954583  T
Q  111 caaaatgggttttcttagaatcataagaaaaatagaggcaatccatcaatacagaaagagttggaacattatgtagctcttcatcacaacatcgagggag 210  Q
    ||||||||||||| ||  |||||||||| ||| |||||||||||||||||||||||||||||| | ||     ||||||||||||||||||||| |||||    
T  6954584 caaaatgggttttgttgaaatcataagataaacagaggcaatccatcaatacagaaagagttgcagcaccggttagctcttcatcacaacatcgggggag 6954683  T
Q  211 caacaattgtgtatatgtc 229  Q
    |||||| ||||||||||||    
T  6954684 caacaactgtgtatatgtc 6954702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 6942922 - 6943137
Alignment:
Q  1 atcattatataactcctgagttttaaaatcgtttagaagattcgtataactaattttaaggaattgagtccaagattcttcaactccaaattccttcatt 100  Q
    ||||||||| ||||||||| |||||||||||||||||||||| ||||| ||||||||||||||||| ||| |||||||||||||||||||||||||||||    
T  6942922 atcattatagaactcctgaattttaaaatcgtttagaagatttgtatatctaattttaaggaattgcgtctaagattcttcaactccaaattccttcatt 6943021  T
Q  101 tgccagataacaaaatgggttttcttagaatcataagaaaaatagaggcaatccatcaatacagaaagagttggaacattatgtagctcttcatcacaac 200  Q
    ||| | |||||||||| |||||||||| ||||||||||||||||||||||||||||             || |||| || ||||||||||||||||||||    
T  6943022 tgctaaataacaaaataggttttcttaaaatcataagaaaaatagaggcaatccat-------------gtaggaaaatcatgtagctcttcatcacaac 6943108  T
Q  201 atcgagggagcaacaattgtgtatatgtc 229  Q
    || ||||||||||||||| ||||||||||    
T  6943109 attgagggagcaacaattttgtatatgtc 6943137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 46 - 229
Target Start/End: Complemental strand, 20770720 - 20770537
Alignment:
Q  46 ataactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaatgggttttcttagaatcataagaaaaatag 145  Q
    |||||||||||||||||||||| |||| || ||||||| ||||||||||||||||||||| ||||||||||  ||||| |||  ||||| ||||||| |     
T  20770720 ataactaattttaaggaattgaatccatgactcttcaattccaaattccttcatttgccatataacaaaataagtttttttaacatcatgagaaaaacaa 20770621  T
Q  146 aggcaatccatcaatacagaaagagttggaacattatgtagctcttcatcacaacatcgagggagcaacaattgtgtatatgtc 229  Q
    |  ||||||||||| ||| |||||||| ||  || | || |   ||||||||||||| ||||||| ||||| ||| | ||||||    
T  20770620 atacaatccatcaacacacaaagagtttgattatcaagtggaaattcatcacaacattgagggagtaacaactgtttgtatgtc 20770537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 36 - 105
Target Start/End: Complemental strand, 17369744 - 17369675
Alignment:
Q  36 gaagattcgtataactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgcca 105  Q
    ||||||||  ||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||    
T  17369744 gaagattctgataactaattttaagaaattgagtccaagagtcttcaactccaaattccttcatttgcca 17369675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 50 - 120
Target Start/End: Complemental strand, 14749463 - 14749393
Alignment:
Q  50 ctaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaatgggt 120  Q
    |||||||| ||||||||||||||||| |||| ||||||||||||| ||||   ||| | ||||||||||||    
T  14749463 ctaattttgaggaattgagtccaagactcttgaactccaaattccatcatcctccataaaacaaaatgggt 14749393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 48 - 126
Target Start/End: Original strand, 24254428 - 24254506
Alignment:
Q  48 aactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaatgggttttctt 126  Q
    |||| ||||| | ||||||||||||||||| ||| ||||||||||||  ||| ||||| ||||||||||| ||| ||||    
T  24254428 aactgattttgatgaattgagtccaagattgttcgactccaaattccgacatctgccatataacaaaatgagttctctt 24254506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 52 - 116
Target Start/End: Original strand, 24950150 - 24950214
Alignment:
Q  52 aattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaat 116  Q
    |||||||||||||||| ||||||| || ||||||||||| | | |||| | ||| ||||||||||    
T  24950150 aattttaaggaattgactccaagactcctcaactccaaacttcatcatcttccatataacaaaat 24950214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 138; Significance: 3e-72; HSPs: 55)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 21 - 226
Target Start/End: Original strand, 1985930 - 1986135
Alignment:
Q  21 ttttaaaatcgtttagaagattcgtataactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaatgggt 120  Q
    |||||| ||| | |||||||||| |||||||||||||||  ||||||||||||||||||||||| |||||||||||||||||||| | ||||||||||||    
T  1985930 ttttaatatcttctagaagattcatataactaattttaaacaattgagtccaagattcttcaacgccaaattccttcatttgccaaagaacaaaatgggt 1986029  T
Q  121 tttcttagaatcataagaaaaatagaggcaatccatcaatacagaaagagttggaacattatgtagctcttcatcacaacatcgagggagcaacaattgt 220  Q
    ||||||  ||||||||||||||||||||||||||||||| ||||||||||||||||||  |||||| |||||||||||| |||||||||||||||| |||    
T  1986030 tttcttgaaatcataagaaaaatagaggcaatccatcaacacagaaagagttggaacaccatgtagatcttcatcacaatatcgagggagcaacaactgt 1986129  T
Q  221 gtatat 226  Q
    ||||||    
T  1986130 gtatat 1986135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 36 - 169
Target Start/End: Original strand, 18514777 - 18514910
Alignment:
Q  36 gaagattcgtataactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaatgggttttcttagaatcata 135  Q
    |||||||| ||||||||||||||||||||||||||||||| | ||||||||||||||| | ||||| ||| ||||  |||||| |||||||  |||||||    
T  18514777 gaagattcatataactaattttaaggaattgagtccaagagttttcaactccaaattcgtccattttccatataatgaaatggcttttcttgaaatcata 18514876  T
Q  136 agaaaaatagaggcaatccatcaatacagaaaga 169  Q
    ||||||| | | ||||||||| || |||||||||    
T  18514877 agaaaaacacatgcaatccattaaaacagaaaga 18514910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 46 - 171
Target Start/End: Original strand, 13416911 - 13417036
Alignment:
Q  46 ataactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaatgggttttcttagaatcataagaaaaatag 145  Q
    |||||||||||||| ||||| |  |||||| ||||||||||||||||||||||||||||| || | ||||| |||||||||| |||||||||||||| |     
T  13416911 ataactaattttaacgaattcaacccaagactcttcaactccaaattccttcatttgccatatgataaaataggttttcttaaaatcataagaaaaacaa 13417010  T
Q  146 aggcaatccatcaatacagaaagagt 171  Q
    || |||||  |||| | |||||||||    
T  13417011 agacaatcattcaacatagaaagagt 13417036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 36 - 117
Target Start/End: Complemental strand, 14076758 - 14076677
Alignment:
Q  36 gaagattcgtataactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaatg 117  Q
    ||||||||  ||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||| ||||| |||||    
T  14076758 gaagattctgataactaattttaagaaattgagtccaagagtcttcaactccaaattccttcatttgccatataacgaaatg 14076677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 36 - 117
Target Start/End: Complemental strand, 14386786 - 14386705
Alignment:
Q  36 gaagattcgtataactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaatg 117  Q
    ||||||||  ||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||| ||||| |||||    
T  14386786 gaagattctgataactaattttaagaaattgagtccaagagtcttcaactccaaattccttcatttgccatataacgaaatg 14386705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 36 - 169
Target Start/End: Original strand, 15571885 - 15572018
Alignment:
Q  36 gaagattcgtataactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaatgggttttcttagaatcata 135  Q
    ||||||| | ||||||||||||| ||||||||  |||||| |||||||||||||| ||| |||||||||| || ||||||||||||  |||  |||||||    
T  15571885 gaagatttgaataactaattttatggaattgaacccaagactcttcaactccaaactccctcatttgccacatgacaaaatgggttcccttgaaatcata 15571984  T
Q  136 agaaaaatagaggcaatccatcaatacagaaaga 169  Q
    ||||||| | || |||||||| || |||||||||    
T  15571985 agaaaaacaaagacaatccataaacacagaaaga 15572018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 34 - 164
Target Start/End: Original strand, 19344563 - 19344693
Alignment:
Q  34 tagaagattcgtataactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaatgggttttcttagaatca 133  Q
    ||||||||||  | ||||||||||||| |||||||||||||||| |||||||||||||||| |||| ||||| ||||||||||| || |||||   ||      
T  19344563 tagaagattctgaaaactaattttaagaaattgagtccaagattgttcaactccaaattccatcatctgccatataacaaaatgagtgttcttgagattg 19344662  T
Q  134 taagaaaaatagaggcaatccatcaatacag 164  Q
    | ||||||| | ||||| |||||||||||||    
T  19344663 tgagaaaaacaaaggcagtccatcaatacag 19344693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 46 - 115
Target Start/End: Original strand, 660847 - 660916
Alignment:
Q  46 ataactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaa 115  Q
    |||||||||||||||||||||||||||||| |||||||||| |||||||||||| ||||| |||||||||    
T  660847 ataactaattttaaggaattgagtccaagactcttcaactcgaaattccttcatctgccatataacaaaa 660916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 47 - 142
Target Start/End: Original strand, 19604464 - 19604559
Alignment:
Q  47 taactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaatgggttttcttagaatcataagaaaaa 142  Q
    |||||||||||||||||||||||||| || ||||||||||||||||||||||| ||||| |||| ||| || ||||| | | |||||| |||||||    
T  19604464 taactaattttaaggaattgagtccaggagtcttcaactccaaattccttcatctgccatataataaagtgagttttatgaaaatcatgagaaaaa 19604559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 53 - 126
Target Start/End: Complemental strand, 22021455 - 22021382
Alignment:
Q  53 attttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaatgggttttctt 126  Q
    |||||||| ||||||||||||||||||||||||||| | ||| |||| ||||| ||||| ||||||||||||||    
T  22021455 attttaagtaattgagtccaagattcttcaactccataatccatcatctgccatataaccaaatgggttttctt 22021382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 46 - 154
Target Start/End: Original strand, 6864807 - 6864914
Alignment:
Q  46 ataactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaatgggttttcttagaatcataagaaaaatag 145  Q
    ||||||| |||||||||| ||||||||||| ||||||||||||||||||||||||  ||| || || ||||| ||||  ||  |||||| ||||||||||    
T  6864807 ataactagttttaaggaactgagtccaagactcttcaactccaaattccttcattaaccatattac-aaatgagtttgtttgaaatcatgagaaaaatag 6864905  T
Q  146 aggcaatcc 154  Q
    || ||||||    
T  6864906 agacaatcc 6864914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 47 - 131
Target Start/End: Complemental strand, 29867305 - 29867221
Alignment:
Q  47 taactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaatgggttttcttagaat 131  Q
    ||||||||| ||||||||||||||||||| |||||||| || |||| |||||||||||| |||| |||||  |||| ||||||||    
T  29867305 taactaattctaaggaattgagtccaagaatcttcaaccccgaatttcttcatttgccatataataaaatcagtttccttagaat 29867221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 48 - 122
Target Start/End: Complemental strand, 22028696 - 22028622
Alignment:
Q  48 aactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaatgggttt 122  Q
    ||||||| ||||| |||||||||||||| |||||||||||| | ||| |||||| ||| ||||||||||||||||    
T  22028696 aactaatcttaagtaattgagtccaagactcttcaactccataatccgtcattttccatataacaaaatgggttt 22028622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 46 - 116
Target Start/End: Original strand, 29454103 - 29454173
Alignment:
Q  46 ataactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaat 116  Q
    |||||||||||||| ||||||||||||||| |||||||||||||||| | ||||  |||| ||||||||||    
T  29454103 ataactaattttaaagaattgagtccaagaatcttcaactccaaatttcatcatccgccatataacaaaat 29454173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 47 - 105
Target Start/End: Complemental strand, 29881325 - 29881267
Alignment:
Q  47 taactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgcca 105  Q
    ||||||||| ||||||||||||||||||| |||||||| ||||||| ||||||||||||    
T  29881325 taactaattctaaggaattgagtccaagaatcttcaaccccaaatttcttcatttgcca 29881267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 48 - 116
Target Start/End: Original strand, 12819918 - 12819986
Alignment:
Q  48 aactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaat 116  Q
    |||| |||||||||||||||||||| |||| |||||||||||||||| |||| ||||| | ||||||||    
T  12819918 aactgattttaaggaattgagtccaggattgttcaactccaaattccgtcatctgccatacaacaaaat 12819986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 48 - 120
Target Start/End: Original strand, 19351071 - 19351143
Alignment:
Q  48 aactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaatgggt 120  Q
    |||||||||| |||||| |||||||||| || ||||||||||||||| |||| ||||| | ||||||||||||    
T  19351071 aactaattttgaggaatggagtccaagactcctcaactccaaattccatcatctgccataaaacaaaatgggt 19351143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 46 - 142
Target Start/End: Original strand, 20058057 - 20058153
Alignment:
Q  46 ataactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaatgggttttcttagaatcataagaaaaa 142  Q
    ||||||||||||||| ||||||  |||||| ||||||||||  ||||||| ||||| ||| |||||||||||  ||| |||| ||||||| ||||||    
T  20058057 ataactaattttaagaaattgacaccaagactcttcaactctgaattcctccattttccatataacaaaatgactttgcttaaaatcatacgaaaaa 20058153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 46 - 122
Target Start/End: Complemental strand, 20352165 - 20352089
Alignment:
Q  46 ataactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaatgggttt 122  Q
    ||||||||||||||  | ||||||||| || ||||||||||||||||||||||||| ||| || |||||||| ||||    
T  20352165 ataactaattttaaaaagttgagtccatgaatcttcaactccaaattccttcatttcccatattacaaaatgagttt 20352089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 46 - 122
Target Start/End: Complemental strand, 22063712 - 22063636
Alignment:
Q  46 ataactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaatgggttt 122  Q
    |||||||||||| |  || ||||||||||| |||| || ||||||||||||||||||||| ||||||||||| ||||    
T  22063712 ataactaattttgaataactgagtccaagactcttgaaatccaaattccttcatttgccatataacaaaatgagttt 22063636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 46 - 142
Target Start/End: Complemental strand, 22100563 - 22100467
Alignment:
Q  46 ataactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaatgggttttcttagaatcataagaaaaa 142  Q
    |||||||||||| |  || ||||||||||| |||| ||||||||||| |||||||||||| |||| |||||| ||||| ||  |||||| |||||||    
T  22100563 ataactaattttgaataactgagtccaagactcttgaactccaaatttcttcatttgccatataataaaatgagtttttttgaaatcatgagaaaaa 22100467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 46 - 110
Target Start/End: Complemental strand, 29874581 - 29874517
Alignment:
Q  46 ataactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataa 110  Q
    ||||||||||||||| ||| |||||||||| |||||||| ||||||| |||||||||||| ||||    
T  29874581 ataactaattttaagtaatggagtccaagaatcttcaaccccaaatttcttcatttgccatataa 29874517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 33 - 116
Target Start/End: Original strand, 29921980 - 29922063
Alignment:
Q  33 ttagaagattcgtataactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaat 116  Q
    ||||||||||   |||||||||| |||||||||||| |||||| |||||| | ||||||| |||||| ||||| ||||||||||    
T  29921980 ttagaagattttgataactaattctaaggaattgagaccaagaatcttcatccccaaatttcttcatctgccatataacaaaat 29922063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 69 - 126
Target Start/End: Complemental strand, 9807871 - 9807814
Alignment:
Q  69 tccaagattcttcaactccaaattccttcatttgccagataacaaaatgggttttctt 126  Q
    ||||||| ||||||||||||||||||||||| ||||| ||||| |||| |||||||||    
T  9807871 tccaagactcttcaactccaaattccttcatctgccatataacgaaatcggttttctt 9807814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 47 - 120
Target Start/End: Original strand, 18952906 - 18952979
Alignment:
Q  47 taactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaatgggt 120  Q
    ||||||||||||||||| |||||||| || |  |||||||||||||||||||| ||||| || | |||||||||    
T  18952906 taactaattttaaggaactgagtccatgacttgtcaactccaaattccttcatctgccatatgataaaatgggt 18952979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 47 - 120
Target Start/End: Original strand, 18982953 - 18983026
Alignment:
Q  47 taactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaatgggt 120  Q
    ||||||||||||||||| |||||||| || |  |||||||||||||||||||| ||||| || | |||||||||    
T  18982953 taactaattttaaggaactgagtccaggacttgtcaactccaaattccttcatctgccatatgataaaatgggt 18983026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 47 - 120
Target Start/End: Original strand, 18997599 - 18997672
Alignment:
Q  47 taactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaatgggt 120  Q
    ||||||||||||||||| |||||||| || |  |||||||||||||||||||| ||||| || | |||||||||    
T  18997599 taactaattttaaggaactgagtccaggacttgtcaactccaaattccttcatctgccatatgataaaatgggt 18997672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 47 - 123
Target Start/End: Complemental strand, 20338993 - 20338917
Alignment:
Q  47 taactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaatgggtttt 123  Q
    ||||| |||| || || |||||||||||| ||||||||||| ||||||||||||| ||| || |||||||| |||||    
T  20338993 taactgatttgaaagagttgagtccaagaatcttcaactcctaattccttcattttccatattacaaaatgagtttt 20338917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 38 - 117
Target Start/End: Complemental strand, 22070189 - 22070110
Alignment:
Q  38 agattcgtataactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaatg 117  Q
    |||||| ||||||||||||| |  ||  |||||||||| |||| ||||||||||| |||||||||||| |||| ||||||    
T  22070189 agattcttataactaattttgaataaccgagtccaagactcttgaactccaaattgcttcatttgccatataataaaatg 22070110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 50 - 141
Target Start/End: Complemental strand, 36263119 - 36263028
Alignment:
Q  50 ctaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaatgggttttcttagaatcataagaaaa 141  Q
    |||| ||||| || |||||||||||| ||||||||||||||||| | ||| | ||| ||||||||||  ||||||||| | |||| ||||||    
T  36263119 ctaactttaatgagttgagtccaagactcttcaactccaaattcttccatcttccatataacaaaatcagttttcttatagtcattagaaaa 36263028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 183 - 229
Target Start/End: Original strand, 13417060 - 13417106
Alignment:
Q  183 gtagctcttcatcacaacatcgagggagcaacaattgtgtatatgtc 229  Q
    |||||||||| |||||||||||||| |||||||| ||||||||||||    
T  13417060 gtagctcttcctcacaacatcgaggtagcaacaactgtgtatatgtc 13417106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 48 - 126
Target Start/End: Original strand, 19325987 - 19326065
Alignment:
Q  48 aactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaatgggttttctt 126  Q
    |||| ||||| | ||||||||||||||||| ||| ||||||||||||  ||| ||||| ||||||||||| ||| ||||    
T  19325987 aactgattttgatgaattgagtccaagattgttctactccaaattccgacatatgccatataacaaaatgagttctctt 19326065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 46 - 116
Target Start/End: Original strand, 19637217 - 19637287
Alignment:
Q  46 ataactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaat 116  Q
    |||||||||||||||||   || |||| || |||| |||||||||||||||||||||||| |||| |||||    
T  19637217 ataactaattttaaggagccgaatccacgactcttgaactccaaattccttcatttgccatataataaaat 19637287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 36 - 122
Target Start/End: Original strand, 20374493 - 20374579
Alignment:
Q  36 gaagattcgtataactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaatgggttt 122  Q
    |||||||  |||||||||||||||  | |||| |||| || ||| ||||||||||||||||||||| ||| || |||||||| ||||    
T  20374493 gaagattattataactaattttaaaaagttgaatccatgaatctccaactccaaattccttcatttcccatattacaaaatgagttt 20374579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 46 - 116
Target Start/End: Complemental strand, 29859524 - 29859454
Alignment:
Q  46 ataactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaat 116  Q
    ||||||||||||||| ||| | |||||||| |||||||||||||||| |||||| | ||| ||||| ||||    
T  29859524 ataactaattttaagaaatggggtccaagaatcttcaactccaaatttcttcatctcccatataacgaaat 29859454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 47 - 116
Target Start/End: Complemental strand, 29106883 - 29106814
Alignment:
Q  47 taactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaat 116  Q
    |||||||||||||  | |||||||||||| |||||||| ||||||| |||||| ||||| | ||||||||    
T  29106883 taactaattttaaaaagttgagtccaagactcttcaaccccaaatttcttcatctgccatacaacaaaat 29106814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 46 - 131
Target Start/End: Original strand, 29431001 - 29431086
Alignment:
Q  46 ataactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaatgggttttcttagaat 131  Q
    ||||||||||||||||||||| |||||||| |||| | | ||||||| | ||||  |||| |||||||||| ||| | ||||||||    
T  29431001 ataactaattttaaggaattgggtccaagaatctttagccccaaatttcatcatccgccatataacaaaataggtgtccttagaat 29431086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #38
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 53 - 122
Target Start/End: Original strand, 29445663 - 29445732
Alignment:
Q  53 attttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaatgggttt 122  Q
    ||||| || |||||||||||||| |||||||| || ||||||||||| ||||| |||| ||||| |||||    
T  29445663 atttttagaaattgagtccaagagtcttcaacccctaattccttcatctgccatataagaaaatcggttt 29445732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #39
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 62 - 158
Target Start/End: Complemental strand, 15444018 - 15443922
Alignment:
Q  62 aattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaatgggttttcttagaatcataagaaaaatagaggcaatccatca 158  Q
    |||||||||||||| |||||||||||| | |||||||| ||||| | ||||||    ||| | || ||||||||||||||| | || ||||||||||    
T  15444018 aattgagtccaagactcttcaactccatactccttcatatgccataaaacaaatccagttgtattggaatcataagaaaaacaaagacaatccatca 15443922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #40
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 48 - 120
Target Start/End: Complemental strand, 19357978 - 19357906
Alignment:
Q  48 aactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaatgggt 120  Q
    |||||||||| | ||||||||||||||| |||| ||||||||||||| |||| | ||| | ||| ||||||||    
T  19357978 aactaatttttaagaattgagtccaagactcttgaactccaaattccatcatcttccataaaacgaaatgggt 19357906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #41
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 48 - 116
Target Start/End: Complemental strand, 19722086 - 19722018
Alignment:
Q  48 aactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaat 116  Q
    |||| ||||| ||||||||||||||||| |||| ||||||||||||| |||| | ||| | ||||||||    
T  19722086 aactgattttgaggaattgagtccaagaatcttgaactccaaattccatcatcttccataaaacaaaat 19722018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #42
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 66 - 122
Target Start/End: Complemental strand, 22080918 - 22080862
Alignment:
Q  66 gagtccaagattcttcaactccaaattccttcatttgccagataacaaaatgggttt 122  Q
    |||||||||| |||| ||||||||||| |||||||||||| |||| |||||| ||||    
T  22080918 gagtccaagactcttgaactccaaattgcttcatttgccatataataaaatgagttt 22080862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #43
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 48 - 116
Target Start/End: Complemental strand, 29899442 - 29899374
Alignment:
Q  48 aactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaat 116  Q
    |||||||||| |  ||||||||||| || |||||||| ||||||| |||||| ||||| ||||||||||    
T  29899442 aactaatttttaaaaattgagtccaggactcttcaaccccaaatttcttcatctgccatataacaaaat 29899374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #44
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 46 - 105
Target Start/End: Original strand, 19645630 - 19645689
Alignment:
Q  46 ataactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgcca 105  Q
    ||||||||||||||| ||  ||||||| || ||||||| ||||||||||||||| |||||    
T  19645630 ataactaattttaagtaacagagtccatgactcttcaattccaaattccttcatctgcca 19645689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #45
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 50 - 141
Target Start/End: Complemental strand, 36260319 - 36260228
Alignment:
Q  50 ctaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaatgggttttcttagaatcataagaaaa 141  Q
    ||||||||||  | |||| ||||||| ||||||||||||||||| | ||| | ||| ||||||||||  ||||||||  |||||| ||||||    
T  36260319 ctaattttaataagttgaatccaagactcttcaactccaaattcttccatcttccatataacaaaatcagttttcttgtaatcattagaaaa 36260228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #46
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 50 - 124
Target Start/End: Original strand, 13888098 - 13888172
Alignment:
Q  50 ctaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaatgggttttc 124  Q
    |||| ||||||||||||||||||||| | |||  |||||||||   |||||| ||| |||||||||| |||||||    
T  13888098 ctaaatttaaggaattgagtccaagacttttcgtctccaaattttgtcattttccatataacaaaattggttttc 13888172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #47
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 48 - 94
Target Start/End: Complemental strand, 19374824 - 19374778
Alignment:
Q  48 aactaattttaaggaattgagtccaagattcttcaactccaaattcc 94  Q
    ||||||||||||| ||||||||||||||   ||||||||||||||||    
T  19374824 aactaattttaagaaattgagtccaagaccgttcaactccaaattcc 19374778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #48
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 50 - 116
Target Start/End: Original strand, 21218712 - 21218778
Alignment:
Q  50 ctaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaat 116  Q
    |||| ||| ||||||||||||||||| |  ||| ||||||||||| |||||||||| ||||| ||||    
T  21218712 ctaaatttgaggaattgagtccaagacttatcatctccaaattccgtcatttgccatataaccaaat 21218778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #49
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 36 - 114
Target Start/End: Complemental strand, 24002279 - 24002201
Alignment:
Q  36 gaagattcgtataactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaa 114  Q
    ||||||||  ||||||||| ||||| |||||||||||||| |||| ||||||  | |||||||| ||||| | ||||||    
T  24002279 gaagattctgataactaatcttaagtaattgagtccaagactcttgaactccgtactccttcatatgccataaaacaaa 24002201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #50
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 62 - 159
Target Start/End: Complemental strand, 26256829 - 26256732
Alignment:
Q  62 aattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaatgggttttcttagaatcataagaaaaatagaggcaatccatcaa 159  Q
    |||||||||||||| |||| ||||||| | |||||||| ||||| | ||||||||   ||| ||| | ||||| ||||||| | ||||| ||||||||    
T  26256829 aattgagtccaagactcttgaactccatactccttcatctgccataaaacaaaatcattttccttggtatcatgagaaaaacaaaggcattccatcaa 26256732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #51
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 193 - 229
Target Start/End: Complemental strand, 14076618 - 14076582
Alignment:
Q  193 atcacaacatcgagggagcaacaattgtgtatatgtc 229  Q
    |||||||||| ||||||| ||||||||||||||||||    
T  14076618 atcacaacatggagggagtaacaattgtgtatatgtc 14076582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #52
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 193 - 229
Target Start/End: Complemental strand, 14386646 - 14386610
Alignment:
Q  193 atcacaacatcgagggagcaacaattgtgtatatgtc 229  Q
    |||||||||| ||||||| ||||||||||||||||||    
T  14386646 atcacaacatggagggagtaacaattgtgtatatgtc 14386610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #53
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 62 - 158
Target Start/End: Complemental strand, 15508800 - 15508704
Alignment:
Q  62 aattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaatgggttttcttagaatcataagaaaaatagaggcaatccatca 158  Q
    |||||||||| ||| | |||||||||| | |||||||| ||||| | ||||||    ||||| || ||||||||||||||| | || ||||||||||    
T  15508800 aattgagtcctagactattcaactccatactccttcatatgccaaaaaacaaatccagttttattggaatcataagaaaaacaaagacaatccatca 15508704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #54
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 69 - 105
Target Start/End: Original strand, 20133340 - 20133376
Alignment:
Q  69 tccaagattcttcaactccaaattccttcatttgcca 105  Q
    ||||||| ||||||||||||||||| |||||||||||    
T  20133340 tccaagaatcttcaactccaaattctttcatttgcca 20133376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #55
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 69 - 105
Target Start/End: Original strand, 20140841 - 20140877
Alignment:
Q  69 tccaagattcttcaactccaaattccttcatttgcca 105  Q
    ||||||| | |||||||||||||||||||||||||||    
T  20140841 tccaagaattttcaactccaaattccttcatttgcca 20140877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 75; Significance: 1e-34; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 37 - 159
Target Start/End: Complemental strand, 53774919 - 53774797
Alignment:
Q  37 aagattcgtataactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaatgggttttcttagaatcataa 136  Q
    |||||||  |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| ||||  ||| ||||||||    
T  53774919 aagattctgataactaattttaaggaattgagtccaagactcttcaactccaaattccttcatttgccatataacaaaatgagtttctttaaaatcataa 53774820  T
Q  137 gaaaaatagaggcaatccatcaa 159  Q
    |||||| | |  |||||||||||    
T  53774819 gaaaaacaaatacaatccatcaa 53774797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 46 - 159
Target Start/End: Complemental strand, 3565814 - 3565701
Alignment:
Q  46 ataactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaatgggttttcttagaatcataagaaaaatag 145  Q
    ||||||||||||||| |||||||||||||| |||||||| |||||||||||||| ||||| |||| ||||| |||||||||| ||  |||||||||| |     
T  3565814 ataactaattttaagaaattgagtccaagactcttcaaccccaaattccttcatctgccatataataaaatcggttttcttataacaataagaaaaacaa 3565715  T
Q  146 aggcaatccatcaa 159  Q
    ||||| ||| ||||    
T  3565714 aggcagtccctcaa 3565701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 46 - 122
Target Start/End: Original strand, 11970982 - 11971058
Alignment:
Q  46 ataactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaatgggttt 122  Q
    |||||||||| |||| |||||||||||||| ||||| ||||||||||||||||||||||| ||||||||||| ||||    
T  11970982 ataactaattctaagaaattgagtccaagactcttccactccaaattccttcatttgccatataacaaaatgagttt 11971058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 46 - 122
Target Start/End: Complemental strand, 3557796 - 3557720
Alignment:
Q  46 ataactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaatgggttt 122  Q
    ||||||||||||||| |||||||||||||| |||||||| |||||||||||||| ||||| |||| ||||| |||||    
T  3557796 ataactaattttaagaaattgagtccaagactcttcaaccccaaattccttcatatgccatataataaaatcggttt 3557720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 46 - 122
Target Start/End: Original strand, 11981683 - 11981759
Alignment:
Q  46 ataactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaatgggttt 122  Q
    ||||||||||||||| ||| ||||||| || ||||| ||||||||||||||||||||||| ||||||||||| ||||    
T  11981683 ataactaattttaagaaatcgagtccaggactcttccactccaaattccttcatttgccatataacaaaatgagttt 11981759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 46 - 154
Target Start/End: Original strand, 3560958 - 3561066
Alignment:
Q  46 ataactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaatgggttttcttagaatcataagaaaaatag 145  Q
    ||||||||||||||| |||||||||||||| |||||||| |||||||  ||||| ||||| |||| ||||| ||||| |||  ||  |||||||||| |     
T  3560958 ataactaattttaagaaattgagtccaagactcttcaaccccaaattttttcatctgccaaataataaaatcggtttccttgtaagaataagaaaaacaa 3561057  T
Q  146 aggcaatcc 154  Q
    |||||||||    
T  3561058 aggcaatcc 3561066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 46 - 159
Target Start/End: Original strand, 8443454 - 8443567
Alignment:
Q  46 ataactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaatgggttttcttagaatcataagaaaaatag 145  Q
    ||||||||||||||  |||||| ||||||| || | ||||||||| |||||||| ||||| |||||| |||| ||| ||||  |||||||||||||| |     
T  8443454 ataactaattttaaataattgaatccaagactcgtgaactccaaaatccttcatctgccaaataacataatgagttctcttgaaatcataagaaaaacaa 8443553  T
Q  146 aggcaatccatcaa 159  Q
    || || ||||||||    
T  8443554 agacagtccatcaa 8443567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 50 - 123
Target Start/End: Complemental strand, 837842 - 837769
Alignment:
Q  50 ctaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaatgggtttt 123  Q
    ||||||||||  |||||| ||||||| |||| ||| ||||| | |||||||||||| |||||||||||||||||    
T  837842 ctaattttaaataattgaatccaagactcttgaacaccaaaattcttcatttgccatataacaaaatgggtttt 837769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 51 - 117
Target Start/End: Complemental strand, 35767083 - 35767017
Alignment:
Q  51 taattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaatg 117  Q
    |||||||||||| |||| ||||||| ||||||||||||||||| | ||| | ||| |||||||||||    
T  35767083 taattttaaggagttgaatccaagactcttcaactccaaattcttccatcttccatataacaaaatg 35767017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 45 - 122
Target Start/End: Complemental strand, 6372516 - 6372439
Alignment:
Q  45 tataactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaatgggttt 122  Q
    ||||||||||||||   |||||| || |||| |||| ||||||| | |||||||||||||| |||| |||||||||||    
T  6372516 tataactaattttatataattgaatctaagactcttgaactccagaatccttcatttgccatataataaaatgggttt 6372439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 47 - 116
Target Start/End: Original strand, 53430100 - 53430169
Alignment:
Q  47 taactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaat 116  Q
    ||||||||||||||||||||||||||||| |||||  | ||| ||| |||||| ||||| || |||||||    
T  53430100 taactaattttaaggaattgagtccaagaatcttcggccccatatttcttcatctgccatatgacaaaat 53430169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 46 - 110
Target Start/End: Original strand, 1686285 - 1686349
Alignment:
Q  46 ataactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataa 110  Q
    |||||||  |||||| |||||||||||||| || ||||| |||||||||||||| ||||| ||||    
T  1686285 ataactatatttaagaaattgagtccaagactcgtcaacgccaaattccttcatctgccatataa 1686349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 47 - 122
Target Start/End: Complemental strand, 6392893 - 6392815
Alignment:
Q  47 taactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgcca---gataacaaaatgggttt 122  Q
    |||||||||||||  |||||| ||||||| || | ||||||||| ||||||||||||||   ||| |||||||||||||    
T  6392893 taactaattttaaataattgaatccaagactcgtgaactccaaaatccttcatttgccatatgatgacaaaatgggttt 6392815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 48 - 92
Target Start/End: Complemental strand, 53790621 - 53790577
Alignment:
Q  48 aactaattttaaggaattgagtccaagattcttcaactccaaatt 92  Q
    ||||||||||||| |||||||||||||||| ||||| ||||||||    
T  53790621 aactaattttaagaaattgagtccaagattgttcaaatccaaatt 53790577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 46 - 105
Target Start/End: Complemental strand, 6113149 - 6113090
Alignment:
Q  46 ataactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgcca 105  Q
    ||||||||||  |||||| ||||||||||| |||| ||||||||||||| ||||| ||||    
T  6113149 ataactaattcgaaggaactgagtccaagactctttaactccaaattccatcattcgcca 6113090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 84 - 159
Target Start/End: Complemental strand, 10475239 - 10475164
Alignment:
Q  84 ctccaaattccttcatttgccagataacaaaatgggttttcttagaatcataagaaaaatagaggcaatccatcaa 159  Q
    ||||||| |||||||||||||| |||||||||||||| || |   |||||||| ||||| | || |||||||||||    
T  10475239 ctccaaaatccttcatttgccatataacaaaatgggtattttggaaatcataacaaaaacaaagacaatccatcaa 10475164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 86 - 159
Target Start/End: Complemental strand, 10464299 - 10464226
Alignment:
Q  86 ccaaattccttcatttgccagataacaaaatgggttttcttagaatcataagaaaaatagaggcaatccatcaa 159  Q
    ||||| |||||||||||||| |||||||||||||| || |   |||||||| ||||| | || |||||||||||    
T  10464299 ccaaaatccttcatttgccatataacaaaatgggtattttggaaatcataacaaaaacaaagacaatccatcaa 10464226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 40 - 116
Target Start/End: Complemental strand, 10468118 - 10468042
Alignment:
Q  40 attcgtataactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaat 116  Q
    |||| ||||| |||||||||  |||||| |||||||    | ||||||||| |||||||||||||| ||||||||||    
T  10468118 attcttataagtaattttaaataattgaatccaagacgactgaactccaaaatccttcatttgccatataacaaaat 10468042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 71; Significance: 3e-32; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 36 - 142
Target Start/End: Complemental strand, 14514980 - 14514874
Alignment:
Q  36 gaagattcgtataactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaatgggttttcttagaatcata 135  Q
    |||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||| | ||||| ||| ||||||| ||||||||||||  |||||||    
T  14514980 gaagattcatataactaattttaaggaattgagtccaagaatcttcaactccaaattcatccattttccatataacaagatgggttttcttgaaatcata 14514881  T
Q  136 agaaaaa 142  Q
    |||||||    
T  14514880 agaaaaa 14514874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 48 - 122
Target Start/End: Original strand, 18908811 - 18908885
Alignment:
Q  48 aactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaatgggttt 122  Q
    |||||||||| ||||||||||||||||| |||| ||||||||||||| |||| | ||| ||||||||||||||||    
T  18908811 aactaattttgaggaattgagtccaagactcttgaactccaaattccatcatcttccatataacaaaatgggttt 18908885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 48 - 122
Target Start/End: Original strand, 18920767 - 18920841
Alignment:
Q  48 aactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaatgggttt 122  Q
    |||||||||| ||||||||||||||||| |||| ||||||||||||| |||| | ||| ||||||||||||||||    
T  18920767 aactaattttgaggaattgagtccaagactcttgaactccaaattccatcatcttccatataacaaaatgggttt 18920841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 48 - 121
Target Start/End: Original strand, 18913559 - 18913632
Alignment:
Q  48 aactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaatgggtt 121  Q
    |||||||||| ||||||||||||||||| |||| ||||||||||||| |||| | ||| |||||||||||||||    
T  18913559 aactaattttgaggaattgagtccaagactcttgaactccaaattccatcatcttccatataacaaaatgggtt 18913632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 46 - 121
Target Start/End: Complemental strand, 554546 - 554471
Alignment:
Q  46 ataactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaatgggtt 121  Q
    ||||||||||||||| |||||||||||||| |||| ||||||| ||||  |||||||||| |||| || |||||||    
T  554546 ataactaattttaagtaattgagtccaagactctttaactccatattctatcatttgccatataataagatgggtt 554471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 62 - 117
Target Start/End: Complemental strand, 20975612 - 20975557
Alignment:
Q  62 aattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaatg 117  Q
    |||||| ||||||| |||||||||||||||||| |||||||||| |||||||||||    
T  20975612 aattgaatccaagaatcttcaactccaaattccctcatttgccatataacaaaatg 20975557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 62 - 116
Target Start/End: Complemental strand, 25698561 - 25698507
Alignment:
Q  62 aattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaat 116  Q
    |||| ||||||||| |||||||||||||||||  |||||||||| ||||||||||    
T  25698561 aatttagtccaagagtcttcaactccaaattctctcatttgccatataacaaaat 25698507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 46 - 118
Target Start/End: Complemental strand, 25377144 - 25377072
Alignment:
Q  46 ataactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaatgg 118  Q
    ||||||||||||||  |||||| ||||||| |||| ||||||||| ||||||||   ||| ||||||||||||    
T  25377144 ataactaattttaaataattgaatccaagactcttgaactccaaaatccttcatcatccatataacaaaatgg 25377072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 60; Significance: 1e-25; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 48 - 159
Target Start/End: Complemental strand, 29647744 - 29647633
Alignment:
Q  48 aactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaatgggttttcttagaatcataagaaaaatagag 147  Q
    |||||||||||||||||||||||||||||| ||||| |||||||||  |||||||||| ||||||||||| |||||||||  ||  | ||||||| | ||    
T  29647744 aactaattttaaggaattgagtccaagattgttcaaatccaaattctatcatttgccatataacaaaatgagttttcttaagatggtgagaaaaacaaag 29647645  T
Q  148 gcaatccatcaa 159  Q
    ||||||||||||    
T  29647644 gcaatccatcaa 29647633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 36 - 168
Target Start/End: Original strand, 18964820 - 18964952
Alignment:
Q  36 gaagattcgtataactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaatgggttttcttagaatcata 135  Q
    ||||||||  ||||| ||||||||| |||||||||||||| ||||||||||||||||||||||||||||| ||||  ||||| ||||| | |  |||||     
T  18964820 gaagattctgataacaaattttaagaaattgagtccaagagtcttcaactccaaattccttcatttgccatataatgaaatgagttttttcaagatcatg 18964919  T
Q  136 agaaaaatagaggcaatccatcaatacagaaag 168  Q
    || |||| | ||||||| |||||||||| ||||    
T  18964920 agtaaaacaaaggcaattcatcaatacacaaag 18964952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 48 - 122
Target Start/End: Original strand, 29597554 - 29597628
Alignment:
Q  48 aactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaatgggttt 122  Q
    |||||||||||||||||||||||||||||| |||||||||||||||  |||||||||| ||||||||||| ||||    
T  29597554 aactaattttaaggaattgagtccaagattgttcaactccaaattcaatcatttgccatataacaaaatgagttt 29597628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 48 - 127
Target Start/End: Complemental strand, 29642427 - 29642348
Alignment:
Q  48 aactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaatgggttttctta 127  Q
    |||||||||||||||||||||||||||||| ||||| |||||||||  |||||||||| ||||| ||||| |||||||||    
T  29642427 aactaattttaaggaattgagtccaagattgttcaaatccaaattctatcatttgccatataacgaaatgagttttctta 29642348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 47 - 122
Target Start/End: Original strand, 24330900 - 24330975
Alignment:
Q  47 taactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaatgggttt 122  Q
    ||||||| |||||||| |||||||||||| |||||||| |||||||||||||| | ||| |||||||||| |||||    
T  24330900 taactaactttaaggagttgagtccaagaatcttcaaccccaaattccttcatctcccatataacaaaatcggttt 24330975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 65 - 114
Target Start/End: Complemental strand, 23086833 - 23086784
Alignment:
Q  65 tgagtccaagattcttcaactccaaattccttcatttgccagataacaaa 114  Q
    ||||||||||| |||| ||||||||| |||||||| ||||| ||||||||    
T  23086833 tgagtccaagactcttgaactccaaactccttcatctgccatataacaaa 23086784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 53 - 121
Target Start/End: Original strand, 28763912 - 28763980
Alignment:
Q  53 attttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaatgggtt 121  Q
    ||||| |||||| || ||||||| | |||||||||||||| | |||| | ||| |||||||||||||||    
T  28763912 attttgaggaatcgactccaagacttttcaactccaaattgcgtcatcttccatataacaaaatgggtt 28763980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 52; Significance: 6e-21; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 45 - 116
Target Start/End: Complemental strand, 4570998 - 4570927
Alignment:
Q  45 tataactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaat 116  Q
    |||||||||||||||| |||||||||||||| |||||||| ||||||| |||||||||||| ||||||||||    
T  4570998 tataactaattttaagcaattgagtccaagaatcttcaaccccaaatttcttcatttgccatataacaaaat 4570927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 45 - 117
Target Start/End: Original strand, 50645484 - 50645556
Alignment:
Q  45 tataactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaatg 117  Q
    |||||||||||||||  |||||| ||||||| |||| ||||||||| |||||||||||||| |||||||||||    
T  50645484 tataactaattttaaataattgaatccaagactcttgaactccaaaatccttcatttgccacataacaaaatg 50645556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 47 - 122
Target Start/End: Original strand, 21855384 - 21855459
Alignment:
Q  47 taactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaatgggttt 122  Q
    ||||||| |||||||| |||||||||||| |||||||| |||||||||||||| | ||| |||||||||| |||||    
T  21855384 taactaactttaaggagttgagtccaagaatcttcaaccccaaattccttcatctcccatataacaaaatcggttt 21855459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 47 - 113
Target Start/End: Original strand, 4014966 - 4015032
Alignment:
Q  47 taactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaa 113  Q
    ||||||| ||||||||||||||||||||| |||||||| ||||||| |||||| ||||| |||||||    
T  4014966 taactaactttaaggaattgagtccaagaatcttcaaccccaaatttcttcatctgccatataacaa 4015032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 46 - 116
Target Start/End: Original strand, 39379061 - 39379131
Alignment:
Q  46 ataactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaat 116  Q
    |||||| |||||||| |||||||||||||| |||||||| |||||||||||||| ||||| |||| |||||    
T  39379061 ataactgattttaagaaattgagtccaagactcttcaaccccaaattccttcatctgccatataataaaat 39379131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 47 - 116
Target Start/End: Complemental strand, 10219054 - 10218985
Alignment:
Q  47 taactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaat 116  Q
    |||||||||||||| |||||||||||||| |||||||  ||||||| |||||||||||| | ||||||||    
T  10219054 taactaattttaagtaattgagtccaagaatcttcaatcccaaatttcttcatttgccatacaacaaaat 10218985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 46 - 111
Target Start/End: Complemental strand, 15961298 - 15961233
Alignment:
Q  46 ataactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataac 111  Q
    |||| ||| ||||| |||||||||||||||||||||| ||||||||| |||||||| ||| |||||    
T  15961298 ataattaactttaaagaattgagtccaagattcttcagctccaaatttcttcattttccatataac 15961233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 45 - 116
Target Start/End: Original strand, 17560772 - 17560843
Alignment:
Q  45 tataactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaat 116  Q
    ||||||||||| |||||||| | |||||||| |||||||| ||||||| |||||| ||||| ||||| ||||    
T  17560772 tataactaattataaggaatggtgtccaagaatcttcaaccccaaatttcttcatgtgccatataaccaaat 17560843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 47 - 109
Target Start/End: Original strand, 4016773 - 4016835
Alignment:
Q  47 taactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagata 109  Q
    ||||||| |||||  || |||||||| || |||||||||||||||| |||||| |||||||||    
T  4016773 taactaaatttaaacaactgagtccaggaatcttcaactccaaatttcttcatctgccagata 4016835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 45; Significance: 9e-17; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 46 - 110
Target Start/End: Complemental strand, 3625804 - 3625740
Alignment:
Q  46 ataactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataa 110  Q
    ||||||||||||||| |||||||||||||| |||||||| ||||||| |||||||||||| ||||    
T  3625804 ataactaattttaagaaattgagtccaagactcttcaaccccaaatttcttcatttgccatataa 3625740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 46 - 118
Target Start/End: Original strand, 25901279 - 25901351
Alignment:
Q  46 ataactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaatgg 118  Q
    |||||||||||| |  |||||| ||||||| |||| ||||| ||| |||||||||| ||| ||||||||||||    
T  25901279 ataactaatttttaacaattgaatccaagactcttgaactcgaaaatccttcattttccatataacaaaatgg 25901351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 46 - 118
Target Start/End: Original strand, 25915297 - 25915369
Alignment:
Q  46 ataactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaatgg 118  Q
    |||||||||||| |  |||||| ||||||| |||| ||||| ||| |||||||||| ||| ||||||||||||    
T  25915297 ataactaatttttaacaattgaatccaagactcttgaactcgaaaatccttcattttccatataacaaaatgg 25915369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 65 - 121
Target Start/End: Complemental strand, 3837960 - 3837904
Alignment:
Q  65 tgagtccaagattcttcaactccaaattccttcatttgccagataacaaaatgggtt 121  Q
    ||||||||||| |||| ||||||||| || ||||||| ||| | |||||||||||||    
T  3837960 tgagtccaagactcttgaactccaaactctttcatttcccacaaaacaaaatgggtt 3837904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0354 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold0354
Description:

Target: scaffold0354; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 36 - 105
Target Start/End: Complemental strand, 7543 - 7474
Alignment:
Q  36 gaagattcgtataactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgcca 105  Q
    ||||||||  ||| ||||||||||||||||||  |||||| || ||||||||||||||||||||||||||    
T  7543 gaagattccgatagctaattttaaggaattgaacccaagactcatcaactccaaattccttcatttgcca 7474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0867 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0867
Description:

Target: scaffold0867; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 46 - 142
Target Start/End: Original strand, 4669 - 4765
Alignment:
Q  46 ataactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaatgggttttcttagaatcataagaaaaa 142  Q
    |||||||||||| |  || ||||||||||| |||| ||||||||||| |||||||||||| |||| |||||| ||||| ||  |||||| |||||||    
T  4669 ataactaattttgaataactgagtccaagactcttgaactccaaatttcttcatttgccatataataaaatgagtttttttgaaatcatgagaaaaa 4765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 36 - 134
Target Start/End: Complemental strand, 27618571 - 27618473
Alignment:
Q  36 gaagattcgtataactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaatgggttttcttagaatcat 134  Q
    ||||||||  |||||||| |||||| || ||||||||||| ||||||||||| | ||| | ||||| ||| ||||||||||| |||| |||| ||||||    
T  27618571 gaagattctgataactaactttaagcaactgagtccaagactcttcaactccgagttcttccattttccatataacaaaatgagtttgcttaaaatcat 27618473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 62 - 114
Target Start/End: Complemental strand, 29390340 - 29390288
Alignment:
Q  62 aattgagtccaagattcttcaactccaaattccttcatttgccagataacaaa 114  Q
    |||| ||| |||||||||||||||||||||||| |||| ||||| ||||||||    
T  29390340 aatttagttcaagattcttcaactccaaattccctcatctgccatataacaaa 29390288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 82 - 122
Target Start/End: Original strand, 42846461 - 42846501
Alignment:
Q  82 aactccaaattccttcatttgccagataacaaaatgggttt 122  Q
    ||||||||| |||||||||||||| ||||||||||||||||    
T  42846461 aactccaaaatccttcatttgccaaataacaaaatgggttt 42846501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 62 - 114
Target Start/End: Original strand, 11338592 - 11338644
Alignment:
Q  62 aattgagtccaagattcttcaactccaaattccttcatttgccagataacaaa 114  Q
    ||||||| ||||||||||| || |||||| || ||||||||||| ||||||||    
T  11338592 aattgagaccaagattcttgaaatccaaactctttcatttgccatataacaaa 11338644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 62 - 114
Target Start/End: Original strand, 11339435 - 11339487
Alignment:
Q  62 aattgagtccaagattcttcaactccaaattccttcatttgccagataacaaa 114  Q
    ||||||||||||||||||| || |||||| ||  |||||||||| ||||||||    
T  11339435 aattgagtccaagattcttgaaatccaaactcgctcatttgccatataacaaa 11339487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 62 - 114
Target Start/End: Original strand, 11345117 - 11345169
Alignment:
Q  62 aattgagtccaagattcttcaactccaaattccttcatttgccagataacaaa 114  Q
    ||||||||||||||||||| || |||||| || | ||||||||| ||||||||    
T  11345117 aattgagtccaagattcttgaaatccaaactcttccatttgccatataacaaa 11345169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 47 - 91
Target Start/End: Complemental strand, 29157117 - 29157073
Alignment:
Q  47 taactaattttaaggaattgagtccaagattcttcaactccaaat 91  Q
    |||||||||||||||| ||||||||| |  |||||||||||||||    
T  29157117 taactaattttaaggagttgagtccatggctcttcaactccaaat 29157073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0242 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: scaffold0242
Description:

Target: scaffold0242; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 53 - 122
Target Start/End: Original strand, 13737 - 13806
Alignment:
Q  53 attttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaatgggttt 122  Q
    |||||||| || |||||||||||||| |||  ||| ||||||||||| ||||| |||| ||||| |||||    
T  13737 attttaagaaactgagtccaagattcatcatttcctaattccttcatctgccatataagaaaatcggttt 13806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0242; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 53 - 122
Target Start/End: Original strand, 22572 - 22641
Alignment:
Q  53 attttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaatgggttt 122  Q
    |||||||| || |||||||||||||| |||  ||| ||||||||||| ||||| |||| ||||| |||||    
T  22572 attttaagaaactgagtccaagattcatcatttcctaattccttcatctgccatataagaaaatcggttt 22641  T

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Target: scaffold0267 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0267
Description:

Target: scaffold0267; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 65 - 121
Target Start/End: Complemental strand, 13441 - 13385
Alignment:
Q  65 tgagtccaagattcttcaactccaaattccttcatttgccagataacaaaatgggtt 121  Q
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T  13441 tgagtccaagactcttgaactccaaactctttcatttcccacaaaacaaaatgggtt 13385  T

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