View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17287_low_74 (Length: 244)
Name: NF17287_low_74
Description: NF17287
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17287_low_74 |
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Alignment Details
Target: chr5 (Bit Score: 223; Significance: 1e-123; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 5395352 - 5395118
Alignment:
| Q |
1 |
tgtcttgaattcagaacgttccgcaagttttcattttgttccggttgatgaaaacagtaaaatacaaagaggtggaagaggctctatttcttcctccggt |
100 |
Q |
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| T |
5395352 |
tgtcttgaattcagaacgttccgcgagttttcattttgttccagttgatgaaaacagtaaaatacaaagaggtggaagaggctctatttcttcctccggt |
5395253 |
T |
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| Q |
101 |
tttgtgcttgataacatgatcaagaaaaataatgaaagtgttaggtacaaatataacgttgattcttccttaggatcatgtcatgaagaaagtgttactc |
200 |
Q |
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| T |
5395252 |
tttgtgcttgataacatgatcaagaaaaataatgaaagtgttaggtacaaatataacgttgattcttccttaggatcatgtcatgaagaaagtgttactc |
5395153 |
T |
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| Q |
201 |
caacaaagagtggtacaagttttcgccacaggttc |
235 |
Q |
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| T |
5395152 |
caacaaagagtggtacaagttttcgccataggttc |
5395118 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 77 - 137
Target Start/End: Complemental strand, 5394596 - 5394536
Alignment:
| Q |
77 |
agaggctctatttcttcctccggttttgtgcttgataacatgatcaagaaaaataatgaaa |
137 |
Q |
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|||| |||| |||| |||| |||||| ||||||||||||||||||||||||| ||||||| |
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| T |
5394596 |
agagactctgtttcgtcctttggttttttgcttgataacatgatcaagaaaaacaatgaaa |
5394536 |
T |
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