View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17287_low_77 (Length: 237)

Name: NF17287_low_77
Description: NF17287
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17287_low_77
NF17287_low_77
[»] chr2 (23 HSPs)
chr2 (17-217)||(35680169-35680369)
chr2 (22-69)||(32087024-32087071)
chr2 (17-70)||(17891706-17891759)
chr2 (21-70)||(22627359-22627408)
chr2 (19-70)||(16157155-16157206)
chr2 (19-70)||(18970844-18970895)
chr2 (20-70)||(17350953-17351003)
chr2 (20-70)||(20379261-20379311)
chr2 (19-69)||(38796158-38796208)
chr2 (25-70)||(29834840-29834885)
chr2 (21-70)||(29850991-29851040)
chr2 (18-70)||(11464388-11464439)
chr2 (23-70)||(8501585-8501632)
chr2 (22-69)||(19139618-19139665)
chr2 (23-70)||(25886266-25886313)
chr2 (23-70)||(26651712-26651759)
chr2 (24-70)||(16257835-16257881)
chr2 (20-70)||(18758276-18758326)
chr2 (20-70)||(25537531-25537581)
chr2 (83-141)||(27955536-27955594)
chr2 (20-70)||(28930249-28930299)
chr2 (21-70)||(18545247-18545296)
chr2 (20-69)||(34574489-34574538)
[»] chr6 (30 HSPs)
chr6 (86-186)||(14239098-14239198)
chr6 (20-70)||(21932449-21932499)
chr6 (17-70)||(22564618-22564671)
chr6 (21-70)||(8246588-8246637)
chr6 (20-69)||(14078013-14078062)
chr6 (21-70)||(23644390-23644439)
chr6 (18-70)||(31878923-31878976)
chr6 (90-142)||(8048319-8048371)
chr6 (23-70)||(2588271-2588318)
chr6 (19-70)||(3358117-3358168)
chr6 (24-70)||(9339054-9339100)
chr6 (20-66)||(9519711-9519757)
chr6 (20-70)||(17822096-17822146)
chr6 (23-72)||(1636607-1636656)
chr6 (23-67)||(17847758-17847802)
chr6 (20-72)||(23005318-23005370)
chr6 (19-70)||(19721916-19721967)
chr6 (19-70)||(21060475-21060526)
chr6 (19-70)||(21079792-21079843)
chr6 (21-72)||(23782996-23783047)
chr6 (20-70)||(14076371-14076421)
chr6 (20-70)||(14641607-14641657)
chr6 (20-70)||(21152563-21152613)
chr6 (20-70)||(22404326-22404376)
chr6 (20-70)||(22845923-22845973)
chr6 (17-70)||(9507339-9507392)
chr6 (17-70)||(21687198-21687251)
chr6 (17-70)||(24389216-24389269)
chr6 (18-70)||(22569829-22569881)
chr6 (181-217)||(33027345-33027381)
[»] chr3 (17 HSPs)
chr3 (86-186)||(43306119-43306219)
chr3 (19-70)||(22246972-22247023)
chr3 (20-70)||(13906655-13906705)
chr3 (20-70)||(18457183-18457233)
chr3 (23-69)||(31283978-31284024)
chr3 (17-70)||(8448777-8448830)
chr3 (18-70)||(18535745-18535797)
chr3 (17-69)||(22470471-22470523)
chr3 (19-70)||(7805717-7805768)
chr3 (27-70)||(18735349-18735392)
chr3 (20-70)||(8145223-8145273)
chr3 (20-70)||(12372404-12372454)
chr3 (20-70)||(14977781-14977831)
chr3 (20-70)||(16228416-16228466)
chr3 (19-64)||(26092886-26092932)
chr3 (17-70)||(3114778-3114831)
chr3 (21-70)||(16223466-16223515)
[»] chr8 (24 HSPs)
chr8 (86-157)||(42891045-42891116)
chr8 (19-70)||(6886643-6886694)
chr8 (21-70)||(14271816-14271865)
chr8 (21-70)||(30832914-30832963)
chr8 (22-70)||(13833677-13833725)
chr8 (19-70)||(14077097-14077148)
chr8 (19-70)||(19784851-19784902)
chr8 (18-69)||(19791369-19791420)
chr8 (23-70)||(37527101-37527148)
chr8 (20-70)||(13313343-13313393)
chr8 (83-141)||(23571145-23571203)
chr8 (20-70)||(24388444-24388494)
chr8 (21-69)||(12342963-12343010)
chr8 (18-70)||(25180791-25180843)
chr8 (19-70)||(4007222-4007273)
chr8 (19-70)||(5856754-5856805)
chr8 (20-67)||(19265800-19265847)
chr8 (11-70)||(24380416-24380475)
chr8 (20-70)||(24583243-24583293)
chr8 (17-70)||(17980768-17980821)
chr8 (20-69)||(23867901-23867950)
chr8 (21-70)||(24109107-24109156)
chr8 (20-65)||(26888466-26888511)
chr8 (17-57)||(28275383-28275423)
[»] chr5 (15 HSPs)
chr5 (17-70)||(18832197-18832250)
chr5 (17-64)||(26122363-26122410)
chr5 (17-70)||(17469627-17469680)
chr5 (19-69)||(24513257-24513307)
chr5 (17-70)||(31600144-31600197)
chr5 (19-70)||(29799019-29799070)
chr5 (18-70)||(24263820-24263872)
chr5 (23-70)||(19003840-19003887)
chr5 (19-70)||(24188873-24188924)
chr5 (20-70)||(16521975-16522025)
chr5 (20-70)||(19006920-19006970)
chr5 (24-70)||(20860314-20860360)
chr5 (20-72)||(23214897-23214949)
chr5 (23-63)||(25920813-25920853)
chr5 (19-69)||(28280257-28280309)
[»] scaffold0043 (1 HSPs)
scaffold0043 (19-70)||(88507-88558)
[»] chr1 (19 HSPs)
chr1 (23-70)||(27116298-27116345)
chr1 (22-70)||(14235358-14235406)
chr1 (18-70)||(15571758-15571810)
chr1 (17-70)||(15526865-15526918)
chr1 (17-70)||(16114775-16114828)
chr1 (17-70)||(22626223-22626276)
chr1 (18-70)||(18098318-18098370)
chr1 (22-70)||(26022370-26022418)
chr1 (19-70)||(27546359-27546410)
chr1 (20-70)||(729111-729161)
chr1 (20-70)||(16915268-16915318)
chr1 (20-70)||(18734657-18734707)
chr1 (20-70)||(22426587-22426637)
chr1 (19-69)||(26652552-26652602)
chr1 (20-70)||(35133859-35133909)
chr1 (21-70)||(15542381-15542430)
chr1 (17-70)||(21848601-21848654)
chr1 (22-70)||(22665761-22665809)
chr1 (17-69)||(44797093-44797145)
[»] scaffold0451 (2 HSPs)
scaffold0451 (20-70)||(5705-5755)
scaffold0451 (17-70)||(10162-10215)
[»] chr7 (19 HSPs)
chr7 (17-70)||(10418532-10418585)
chr7 (17-70)||(21234078-21234131)
chr7 (17-70)||(21502829-21502882)
chr7 (19-70)||(1586166-1586217)
chr7 (20-70)||(23173757-23173807)
chr7 (19-70)||(10332379-10332430)
chr7 (24-70)||(9288885-9288931)
chr7 (24-70)||(9298677-9298723)
chr7 (17-70)||(6018333-6018386)
chr7 (17-70)||(6039366-6039419)
chr7 (18-70)||(23127964-23128016)
chr7 (19-70)||(9918142-9918193)
chr7 (19-70)||(9926054-9926105)
chr7 (20-70)||(5236938-5236988)
chr7 (20-70)||(8317513-8317563)
chr7 (20-70)||(9978260-9978310)
chr7 (17-70)||(14195723-14195776)
chr7 (19-70)||(21109101-21109153)
chr7 (17-69)||(23897216-23897268)
[»] chr4 (22 HSPs)
chr4 (20-69)||(18750800-18750849)
chr4 (22-70)||(19883586-19883634)
chr4 (19-70)||(23083675-23083726)
chr4 (11-69)||(9263413-9263471)
chr4 (21-70)||(25025081-25025130)
chr4 (19-70)||(19667019-19667071)
chr4 (20-70)||(11241072-11241123)
chr4 (19-70)||(17434409-17434460)
chr4 (17-70)||(14573424-14573477)
chr4 (21-70)||(20828212-20828261)
chr4 (18-70)||(5691731-5691783)
chr4 (19-70)||(19538954-19539006)
chr4 (20-70)||(7583767-7583817)
chr4 (20-70)||(10106270-10106320)
chr4 (18-64)||(22350310-22350356)
chr4 (21-70)||(11512099-11512148)
chr4 (19-71)||(26047215-26047268)
chr4 (19-71)||(26052396-26052449)
chr4 (19-70)||(19547122-19547174)
chr4 (22-70)||(19556613-19556661)
chr4 (21-70)||(23970734-23970785)
chr4 (22-70)||(25096275-25096323)
[»] scaffold0024 (1 HSPs)
scaffold0024 (17-70)||(41314-41367)
[»] scaffold0005 (1 HSPs)
scaffold0005 (17-70)||(243899-243952)
[»] scaffold0086 (1 HSPs)
scaffold0086 (19-52)||(12857-12890)
[»] scaffold0360 (1 HSPs)
scaffold0360 (26-70)||(16545-16589)


Alignment Details
Target: chr2 (Bit Score: 177; Significance: 2e-95; HSPs: 23)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 17 - 217
Target Start/End: Original strand, 35680169 - 35680369
Alignment:
Q  17 acagaggagtattagagcaattgtctatgattttgggacatttgtaatgttttccaaaacttatcctggaaccggtcgaagaacattcagtcaccaaacc 116  Q
    ||||||||||||||||||||||||||||||||| || | ||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  35680169 acagaggagtattagagcaattgtctatgatttcggaaaatttggaatgttttccaaaactcatcctggaaccggtcgaagaacattcagtcaccaaacc 35680268  T
Q  117 tgttgttagtattgagaagactgatgagcacatggtttcactatgtaattgagcaaataggaatgatgaaaaattaaagcaagaaaatggaatgagtatc 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  35680269 tgttgttagtattgagaagactgatgagcacatggtttcactatgtaattgagcaaataggaatgatgaaaaattaaagcaagaaaaaggaatgagtatc 35680368  T
Q  217 g 217  Q
    |    
T  35680369 g 35680369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 22 - 69
Target Start/End: Complemental strand, 32087071 - 32087024
Alignment:
Q  22 ggagtattagagcaattgtctatgattttgggacatttgtaatgtttt 69  Q
    ||||||||||| |||||||||||||||||| |||||||||||||||||    
T  32087071 ggagtattagatcaattgtctatgattttgcgacatttgtaatgtttt 32087024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 17 - 70
Target Start/End: Complemental strand, 17891759 - 17891706
Alignment:
Q  17 acagaggagtattagagcaattgtctatgattttgggacatttgtaatgttttc 70  Q
    ||||||||||||||||| ||||  ||||||||| ||||||||||||||||||||    
T  17891759 acagaggagtattagagtaatttcctatgatttcgggacatttgtaatgttttc 17891706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 21 - 70
Target Start/End: Complemental strand, 22627408 - 22627359
Alignment:
Q  21 aggagtattagagcaattgtctatgattttgggacatttgtaatgttttc 70  Q
    ||||||||||||| ||||||||||||||| ||| ||||||||||||||||    
T  22627408 aggagtattagagaaattgtctatgatttaggggcatttgtaatgttttc 22627359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 19 - 70
Target Start/End: Original strand, 16157155 - 16157206
Alignment:
Q  19 agaggagtattagagcaattgtctatgattttgggacatttgtaatgttttc 70  Q
    |||||||||||||| ||||||  |||||||||||||||||| ||||||||||    
T  16157155 agaggagtattagaacaattgcttatgattttgggacatttataatgttttc 16157206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 19 - 70
Target Start/End: Original strand, 18970844 - 18970895
Alignment:
Q  19 agaggagtattagagcaattgtctatgattttgggacatttgtaatgttttc 70  Q
    |||||||||||||||||||||  || ||||||| ||||||||||||||||||    
T  18970844 agaggagtattagagcaattgcttacgattttgcgacatttgtaatgttttc 18970895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 20 - 70
Target Start/End: Complemental strand, 17351003 - 17350953
Alignment:
Q  20 gaggagtattagagcaattgtctatgattttgggacatttgtaatgttttc 70  Q
    ||||||||||||| ||||||||||||||||  |||| ||||||||||||||    
T  17351003 gaggagtattagaacaattgtctatgatttcaggacttttgtaatgttttc 17350953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 20 - 70
Target Start/End: Complemental strand, 20379311 - 20379261
Alignment:
Q  20 gaggagtattagagcaattgtctatgattttgggacatttgtaatgttttc 70  Q
    ||||||||||||| | |||||||||||||| ||||| ||||||||||||||    
T  20379311 gaggagtattagaacgattgtctatgatttcgggacttttgtaatgttttc 20379261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 19 - 69
Target Start/End: Complemental strand, 38796208 - 38796158
Alignment:
Q  19 agaggagtattagagcaattgtctatgattttgggacatttgtaatgtttt 69  Q
    |||||||||||||| ||||||| |||||||| || ||||||||||||||||    
T  38796208 agaggagtattagatcaattgtttatgatttcggaacatttgtaatgtttt 38796158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 25 - 70
Target Start/End: Complemental strand, 29834885 - 29834840
Alignment:
Q  25 gtattagagcaattgtctatgattttgggacatttgtaatgttttc 70  Q
    |||||||| ||||||||||||||||| | |||||||||||||||||    
T  29834885 gtattagatcaattgtctatgattttagtacatttgtaatgttttc 29834840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 21 - 70
Target Start/End: Complemental strand, 29851040 - 29850991
Alignment:
Q  21 aggagtattagagcaattgtctatgattttgggacatttgtaatgttttc 70  Q
    |||||||||||| |||||  ||||||||||| ||||||||||||||||||    
T  29851040 aggagtattagatcaattccctatgattttgagacatttgtaatgttttc 29850991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 70
Target Start/End: Original strand, 11464388 - 11464439
Alignment:
Q  18 cagaggagtattagagcaattgtctatgattttgggacatttgtaatgttttc 70  Q
    ||||||||||||||| |||| | ||||||||| ||||||||||||||||||||    
T  11464388 cagaggagtattagatcaat-gcctatgatttagggacatttgtaatgttttc 11464439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 23 - 70
Target Start/End: Original strand, 8501585 - 8501632
Alignment:
Q  23 gagtattagagcaattgtctatgattttgggacatttgtaatgttttc 70  Q
    |||||||||| ||||||  ||||||||||||||||||| |||||||||    
T  8501585 gagtattagaacaattgcttatgattttgggacatttgcaatgttttc 8501632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 22 - 69
Target Start/End: Complemental strand, 19139665 - 19139618
Alignment:
Q  22 ggagtattagagcaattgtctatgattttgggacatttgtaatgtttt 69  Q
    |||||||| || ||||||  ||||||||||||||||||||||||||||    
T  19139665 ggagtattggatcaattgcttatgattttgggacatttgtaatgtttt 19139618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 23 - 70
Target Start/End: Original strand, 25886266 - 25886313
Alignment:
Q  23 gagtattagagcaattgtctatgattttgggacatttgtaatgttttc 70  Q
    |||||||||| | |||||||||||||| ||||| ||||||||||||||    
T  25886266 gagtattagaacgattgtctatgatttcgggacttttgtaatgttttc 25886313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 23 - 70
Target Start/End: Original strand, 26651712 - 26651759
Alignment:
Q  23 gagtattagagcaattgtctatgattttgggacatttgtaatgttttc 70  Q
    |||||||||||||||||  |||||||| | ||||||||||||||||||    
T  26651712 gagtattagagcaattgcttatgatttcgagacatttgtaatgttttc 26651759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 70
Target Start/End: Complemental strand, 16257881 - 16257835
Alignment:
Q  24 agtattagagcaattgtctatgattttgggacatttgtaatgttttc 70  Q
    |||||||||| ||||||||||||||| |  |||||||||||||||||    
T  16257881 agtattagagaaattgtctatgatttcgaaacatttgtaatgttttc 16257835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 70
Target Start/End: Complemental strand, 18758326 - 18758276
Alignment:
Q  20 gaggagtattagagcaattgtctatgattttgggacatttgtaatgttttc 70  Q
    ||||||||||||| | |||| ||||||||| ||||| ||||||||||||||    
T  18758326 gaggagtattagaacgattgcctatgatttcgggacttttgtaatgttttc 18758276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 70
Target Start/End: Complemental strand, 25537581 - 25537531
Alignment:
Q  20 gaggagtattagagcaattgtctatgattttgggacatttgtaatgttttc 70  Q
    ||||||||||||||| |||| |||||||||  |||| ||||||||||||||    
T  25537581 gaggagtattagagcgattgcctatgatttctggacttttgtaatgttttc 25537531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 83 - 141
Target Start/End: Complemental strand, 27955594 - 27955536
Alignment:
Q  83 tggaaccggtcgaagaacattcagtcaccaaacctgttgttagtattgagaagactgat 141  Q
    ||||||| || |||||||||||||||||| ||||| |||||| ||| ||| ||||||||    
T  27955594 tggaaccagttgaagaacattcagtcaccgaacctattgttattatggaggagactgat 27955536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 70
Target Start/End: Complemental strand, 28930299 - 28930249
Alignment:
Q  20 gaggagtattagagcaattgtctatgattttgggacatttgtaatgttttc 70  Q
    ||||| ||||||| |||||| ||||||||| ||||| ||||||||||||||    
T  28930299 gaggaatattagaacaattgcctatgatttcgggacttttgtaatgttttc 28930249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 21 - 70
Target Start/End: Complemental strand, 18545296 - 18545247
Alignment:
Q  21 aggagtattagagcaattgtctatgattttgggacatttgtaatgttttc 70  Q
    |||||||||||| |||||| ||||||||| |||||||||| | |||||||    
T  18545296 aggagtattagatcaattgcctatgatttcgggacatttgaattgttttc 18545247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 20 - 69
Target Start/End: Complemental strand, 34574538 - 34574489
Alignment:
Q  20 gaggagtattagagcaattgtctatgattttgggacatttgtaatgtttt 69  Q
    ||||||||||||| | | || ||||||||||||||| |||||||||||||    
T  34574538 gaggagtattagaacgaatgcctatgattttgggacttttgtaatgtttt 34574489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 77; Significance: 7e-36; HSPs: 30)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 86 - 186
Target Start/End: Original strand, 14239098 - 14239198
Alignment:
Q  86 aaccggtcgaagaacattcagtcaccaaacctgttgttagtattgagaagactgatgagcacatggtttcactatgtaattgagcaaataggaatgatga 185  Q
    ||||||||||| |||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||| ||| || |||||||||||||||||||    
T  14239098 aaccggtcgaaaaacattcagtcaccgaacctgttgttagtattgaggagactgatgagcacatggtttcactttgtgatggagcaaataggaatgatga 14239197  T
Q  186 a 186  Q
    |    
T  14239198 a 14239198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 20 - 70
Target Start/End: Complemental strand, 21932499 - 21932449
Alignment:
Q  20 gaggagtattagagcaattgtctatgattttgggacatttgtaatgttttc 70  Q
    |||||||||||||| |||||||||||||||| |||||||||||||||||||    
T  21932499 gaggagtattagagaaattgtctatgattttaggacatttgtaatgttttc 21932449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 17 - 70
Target Start/End: Original strand, 22564618 - 22564671
Alignment:
Q  17 acagaggagtattagagcaattgtctatgattttgggacatttgtaatgttttc 70  Q
    ||||||||||||||||||||||| || |||||| ||||||||||||||||||||    
T  22564618 acagaggagtattagagcaattgcctgtgatttcgggacatttgtaatgttttc 22564671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 21 - 70
Target Start/End: Complemental strand, 8246637 - 8246588
Alignment:
Q  21 aggagtattagagcaattgtctatgattttgggacatttgtaatgttttc 70  Q
    |||||||||||| |||||||||||||||||||||||||| || |||||||    
T  8246637 aggagtattagatcaattgtctatgattttgggacatttttattgttttc 8246588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 20 - 69
Target Start/End: Complemental strand, 14078062 - 14078013
Alignment:
Q  20 gaggagtattagagcaattgtctatgattttgggacatttgtaatgtttt 69  Q
    |||||||||||||||||||| ||||||||| ||||| |||||||||||||    
T  14078062 gaggagtattagagcaattgcctatgatttcgggacttttgtaatgtttt 14078013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 21 - 70
Target Start/End: Original strand, 23644390 - 23644439
Alignment:
Q  21 aggagtattagagcaattgtctatgattttgggacatttgtaatgttttc 70  Q
    |||||||||||| |||||| ||||||||| ||||||||||||||||||||    
T  23644390 aggagtattagatcaattgcctatgatttcgggacatttgtaatgttttc 23644439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 18 - 70
Target Start/End: Original strand, 31878923 - 31878976
Alignment:
Q  18 cagaggagtattagagcaattgtctatgatttt-gggacatttgtaatgttttc 70  Q
    ||||||| ||||||| ||||||||||||||||| ||||||||||||||||||||    
T  31878923 cagaggaatattagatcaattgtctatgattttcgggacatttgtaatgttttc 31878976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 90 - 142
Target Start/End: Complemental strand, 8048371 - 8048319
Alignment:
Q  90 ggtcgaagaacattcagtcaccaaacctgttgttagtattgagaagactgatg 142  Q
    ||||| |||||||||||||||| ||||| |||||||||||||| |||||||||    
T  8048371 ggtcggagaacattcagtcaccgaacctattgttagtattgaggagactgatg 8048319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 23 - 70
Target Start/End: Complemental strand, 2588318 - 2588271
Alignment:
Q  23 gagtattagagcaattgtctatgattttgggacatttgtaatgttttc 70  Q
    |||||||||| |||||||||||||||| | ||||||||||||||||||    
T  2588318 gagtattagaacaattgtctatgatttcgtgacatttgtaatgttttc 2588271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 19 - 70
Target Start/End: Complemental strand, 3358168 - 3358117
Alignment:
Q  19 agaggagtattagagcaattgtctatgattttgggacatttgtaatgttttc 70  Q
    ||||||||||||||| |||||| ||||||| ||||||||||| |||||||||    
T  3358168 agaggagtattagagtaattgtttatgattatgggacatttgaaatgttttc 3358117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 24 - 70
Target Start/End: Original strand, 9339054 - 9339100
Alignment:
Q  24 agtattagagcaattgtctatgattttgggacatttgtaatgttttc 70  Q
    ||||||||||||||||  |||||||| ||||||||||||||||||||    
T  9339054 agtattagagcaattgcttatgatttggggacatttgtaatgttttc 9339100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 20 - 66
Target Start/End: Complemental strand, 9519757 - 9519711
Alignment:
Q  20 gaggagtattagagcaattgtctatgattttgggacatttgtaatgt 66  Q
    |||||||||||||||||||| ||||||||||||| | ||||||||||    
T  9519757 gaggagtattagagcaattgcctatgattttggggcttttgtaatgt 9519711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 20 - 70
Target Start/End: Original strand, 17822096 - 17822146
Alignment:
Q  20 gaggagtattagagcaattgtctatgattttgggacatttgtaatgttttc 70  Q
    ||||||||||||| | |||| ||||||||||||||| ||||||||||||||    
T  17822096 gaggagtattagaacgattgcctatgattttgggacttttgtaatgttttc 17822146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 23 - 72
Target Start/End: Complemental strand, 1636656 - 1636607
Alignment:
Q  23 gagtattagagcaattgtctatgattttgggacatttgtaatgttttcca 72  Q
    |||||||||| |||||| |||| ||||||||| |||||||||||||||||    
T  1636656 gagtattagaacaattgcctataattttgggatatttgtaatgttttcca 1636607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 23 - 67
Target Start/End: Complemental strand, 17847802 - 17847758
Alignment:
Q  23 gagtattagagcaattgtctatgattttgggacatttgtaatgtt 67  Q
    |||||||||| | ||||||||||||||||||| ||||||||||||    
T  17847802 gagtattagaacgattgtctatgattttgggatatttgtaatgtt 17847758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 20 - 72
Target Start/End: Original strand, 23005318 - 23005370
Alignment:
Q  20 gaggagtattagagcaattgtctatgattttgggacatttgtaatgttttcca 72  Q
    |||||| |||||| | |||| ||||||||| ||||||||||||||||||||||    
T  23005318 gaggagcattagaacgattgcctatgatttcgggacatttgtaatgttttcca 23005370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 19 - 70
Target Start/End: Original strand, 19721916 - 19721967
Alignment:
Q  19 agaggagtattagagcaattgtctatgattttgggacatttgtaatgttttc 70  Q
    |||||||||||||| ||||||  ||||||||||||||| || ||||||||||    
T  19721916 agaggagtattagatcaattgcttatgattttgggacagttttaatgttttc 19721967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 19 - 70
Target Start/End: Original strand, 21060475 - 21060526
Alignment:
Q  19 agaggagtattagagcaattgtctatgattttgggacatttgtaatgttttc 70  Q
    |||||||||||||| ||||||  ||||||||| |||||||| ||||||||||    
T  21060475 agaggagtattagatcaattgcatatgatttttggacatttttaatgttttc 21060526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 19 - 70
Target Start/End: Original strand, 21079792 - 21079843
Alignment:
Q  19 agaggagtattagagcaattgtctatgattttgggacatttgtaatgttttc 70  Q
    |||||||||||||| ||||||  ||||||||| ||||||||| |||||||||    
T  21079792 agaggagtattagatcaattgcatatgatttttggacatttgcaatgttttc 21079843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 21 - 72
Target Start/End: Complemental strand, 23783047 - 23782996
Alignment:
Q  21 aggagtattagagcaattgtctatgattttgggacatttgtaatgttttcca 72  Q
    ||||| |||||| | |||| ||||||||| ||||||||||||||||||||||    
T  23783047 aggagcattagaacgattgcctatgatttcgggacatttgtaatgttttcca 23782996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 70
Target Start/End: Complemental strand, 14076421 - 14076371
Alignment:
Q  20 gaggagtattagagcaattgtctatgattttgggacatttgtaatgttttc 70  Q
    |||||||||||||| ||||| |||||||||  |||| ||||||||||||||    
T  14076421 gaggagtattagagaaattgcctatgatttcaggacttttgtaatgttttc 14076371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 70
Target Start/End: Complemental strand, 14641657 - 14641607
Alignment:
Q  20 gaggagtattagagcaattgtctatgattttgggacatttgtaatgttttc 70  Q
    ||||||||||||| |||||  |||||||||||| || ||||||||||||||    
T  14641657 gaggagtattagaacaattacctatgattttggaacttttgtaatgttttc 14641607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 70
Target Start/End: Original strand, 21152563 - 21152613
Alignment:
Q  20 gaggagtattagagcaattgtctatgattttgggacatttgtaatgttttc 70  Q
    ||||||||||||| | |||||||||||||| || || ||||||||||||||    
T  21152563 gaggagtattagaacgattgtctatgatttcggcacttttgtaatgttttc 21152613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 70
Target Start/End: Original strand, 22404326 - 22404376
Alignment:
Q  20 gaggagtattagagcaattgtctatgattttgggacatttgtaatgttttc 70  Q
    ||||||||||| | | |||||||||||||| ||||| ||||||||||||||    
T  22404326 gaggagtattaaaacgattgtctatgatttcgggacttttgtaatgttttc 22404376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 70
Target Start/End: Original strand, 22845923 - 22845973
Alignment:
Q  20 gaggagtattagagcaattgtctatgattttgggacatttgtaatgttttc 70  Q
    ||||||||||||| |||||| |||| |||||||||  ||||||||||||||    
T  22845923 gaggagtattagaacaattgcctataattttgggagttttgtaatgttttc 22845973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 70
Target Start/End: Original strand, 9507339 - 9507392
Alignment:
Q  17 acagaggagtattagagcaattgtctatgattttgggacatttgtaatgttttc 70  Q
    |||| ||||||||||| ||||||  |||||||| |||||||||||||| |||||    
T  9507339 acaggggagtattagaacaattgcttatgatttcgggacatttgtaatattttc 9507392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 70
Target Start/End: Original strand, 21687198 - 21687251
Alignment:
Q  17 acagaggagtattagagcaattgtctatgattttgggacatttgtaatgttttc 70  Q
    ||||| ||||| |||| |||||||| | |||||||||||||||||| |||||||    
T  21687198 acagaagagtaatagatcaattgtcgaggattttgggacatttgtattgttttc 21687251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 70
Target Start/End: Original strand, 24389216 - 24389269
Alignment:
Q  17 acagaggagtattagagcaattgtctatgattttgggacatttgtaatgttttc 70  Q
    ||||||||||||||||  ||||| ||||||||| ||||||||| || |||||||    
T  24389216 acagaggagtattagattaattgcctatgatttcgggacatttatattgttttc 24389269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 70
Target Start/End: Complemental strand, 22569881 - 22569829
Alignment:
Q  18 cagaggagtattagagcaattgtctatgattttgggacatttgtaatgttttc 70  Q
    ||||||||||||||| |||||  ||||||||| | ||||||| ||||||||||    
T  22569881 cagaggagtattagatcaatttcctatgatttcgagacatttttaatgttttc 22569829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 181 - 217
Target Start/End: Original strand, 33027345 - 33027381
Alignment:
Q  181 gatgaaaaattaaagcaagaaaatggaatgagtatcg 217  Q
    ||||||||||||||||||||| | |||||||||||||    
T  33027345 gatgaaaaattaaagcaagaagaaggaatgagtatcg 33027381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 65; Significance: 1e-28; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 86 - 186
Target Start/End: Complemental strand, 43306219 - 43306119
Alignment:
Q  86 aaccggtcgaagaacattcagtcaccaaacctgttgttagtattgagaagactgatgagcacatggtttcactatgtaattgagcaaataggaatgatga 185  Q
    |||||||||||||||||||||||||| ||| |||||||||||||| | ||||||||||||||||||||| ||| ||| || ||| |||||||||||||||    
T  43306219 aaccggtcgaagaacattcagtcaccgaacttgttgttagtattgtggagactgatgagcacatggttttactttgtgatggagaaaataggaatgatga 43306120  T
Q  186 a 186  Q
    |    
T  43306119 a 43306119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 19 - 70
Target Start/End: Complemental strand, 22247023 - 22246972
Alignment:
Q  19 agaggagtattagagcaattgtctatgattttgggacatttgtaatgttttc 70  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  22247023 agaggagtattagagcaattgactatgattttgggacatttgtaatgttttc 22246972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 20 - 70
Target Start/End: Original strand, 13906655 - 13906705
Alignment:
Q  20 gaggagtattagagcaattgtctatgattttgggacatttgtaatgttttc 70  Q
    ||||||||||||| ||||||  |||||||| ||||||||||||||||||||    
T  13906655 gaggagtattagatcaattgcttatgatttcgggacatttgtaatgttttc 13906705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 20 - 70
Target Start/End: Original strand, 18457183 - 18457233
Alignment:
Q  20 gaggagtattagagcaattgtctatgattttgggacatttgtaatgttttc 70  Q
    ||||||||||||| |||||| ||||||||| ||||| ||||||||||||||    
T  18457183 gaggagtattagaacaattgcctatgatttcgggacttttgtaatgttttc 18457233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 23 - 69
Target Start/End: Original strand, 31283978 - 31284024
Alignment:
Q  23 gagtattagagcaattgtctatgattttgggacatttgtaatgtttt 69  Q
    |||||||||||||||||  |||||||| |||||||||||||||||||    
T  31283978 gagtattagagcaattgcttatgatttcgggacatttgtaatgtttt 31284024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 17 - 70
Target Start/End: Complemental strand, 8448830 - 8448777
Alignment:
Q  17 acagaggagtattagagcaattgtctatgattttgggacatttgtaatgttttc 70  Q
    |||||||||||||| |||||||| ||||||||| | || |||||||||||||||    
T  8448830 acagaggagtattatagcaattgcctatgatttcgagatatttgtaatgttttc 8448777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 70
Target Start/End: Complemental strand, 18535797 - 18535745
Alignment:
Q  18 cagaggagtattagagcaattgtctatgattttgggacatttgtaatgttttc 70  Q
    ||||||||||||||| ||||||  |||||||| |||||||||||| |||||||    
T  18535797 cagaggagtattagatcaattgcttatgatttcgggacatttgtattgttttc 18535745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 17 - 69
Target Start/End: Original strand, 22470471 - 22470523
Alignment:
Q  17 acagaggagtattagagcaattgtctatgattttgggacatttgtaatgtttt 69  Q
    |||||||||| ||||||||||||  |||||||| | |||||||||||||||||    
T  22470471 acagaggagtgttagagcaattgcatatgatttcgtgacatttgtaatgtttt 22470523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 19 - 70
Target Start/End: Complemental strand, 7805768 - 7805717
Alignment:
Q  19 agaggagtattagagcaattgtctatgattttgggacatttgtaatgttttc 70  Q
    ||||||||||||||||||||   ||||||||||  |||||||||||||||||    
T  7805768 agaggagtattagagcaattacttatgattttgatacatttgtaatgttttc 7805717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 27 - 70
Target Start/End: Original strand, 18735349 - 18735392
Alignment:
Q  27 attagagcaattgtctatgattttgggacatttgtaatgttttc 70  Q
    ||||||| ||||||||||||||| |||||||||||| |||||||    
T  18735349 attagagtaattgtctatgatttcgggacatttgtattgttttc 18735392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 70
Target Start/End: Complemental strand, 8145273 - 8145223
Alignment:
Q  20 gaggagtattagagcaattgtctatgattttgggacatttgtaatgttttc 70  Q
    ||||||||||| | |||||| ||||||||| ||||| ||||||||||||||    
T  8145273 gaggagtattaaaacaattgcctatgatttcgggacttttgtaatgttttc 8145223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 70
Target Start/End: Original strand, 12372404 - 12372454
Alignment:
Q  20 gaggagtattagagcaattgtctatgattttgggacatttgtaatgttttc 70  Q
    ||||||||||||| || |   ||||||||||||||||||||||||||||||    
T  12372404 gaggagtattagaacagtgacctatgattttgggacatttgtaatgttttc 12372454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 70
Target Start/End: Complemental strand, 14977831 - 14977781
Alignment:
Q  20 gaggagtattagagcaattgtctatgattttgggacatttgtaatgttttc 70  Q
    ||||||||||| | |||||| ||||||||| ||||| ||||||||||||||    
T  14977831 gaggagtattataacaattgcctatgatttcgggacttttgtaatgttttc 14977781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 70
Target Start/End: Original strand, 16228416 - 16228466
Alignment:
Q  20 gaggagtattagagcaattgtctatgattttgggacatttgtaatgttttc 70  Q
    ||||||||||||| | |||| ||||||||||||||| ||||| ||||||||    
T  16228416 gaggagtattagaactattgcctatgattttgggacttttgtcatgttttc 16228466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 64
Target Start/End: Complemental strand, 26092932 - 26092886
Alignment:
Q  19 agaggagtattagagcaattgtctatgatttt-gggacatttgtaat 64  Q
    |||||||||||||| |||||||||||| |||| ||||||||||||||    
T  26092932 agaggagtattagaacaattgtctatggttttcgggacatttgtaat 26092886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 70
Target Start/End: Original strand, 3114778 - 3114831
Alignment:
Q  17 acagaggagtattagagcaattgtctatgattttgggacatttgtaatgttttc 70  Q
    ||||||||||||||||| ||||| ||||||||| | || ||||| |||||||||    
T  3114778 acagaggagtattagagtaattgcctatgatttcgagatatttgaaatgttttc 3114831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 21 - 70
Target Start/End: Complemental strand, 16223515 - 16223466
Alignment:
Q  21 aggagtattagagcaattgtctatgattttgggacatttgtaatgttttc 70  Q
    ||||||||||||| ||||  |||||||||| |||||||| ||||||||||    
T  16223515 aggagtattagagaaatttcctatgattttaggacatttataatgttttc 16223466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 60; Significance: 1e-25; HSPs: 24)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 86 - 157
Target Start/End: Original strand, 42891045 - 42891116
Alignment:
Q  86 aaccggtcgaagaacattcagtcaccaaacctgttgttagtattgagaagactgatgagcacatggtttcac 157  Q
    |||||||||||||||||||||||||| |||||||||||||||||| | ||||||||||||||||||||||||    
T  42891045 aaccggtcgaagaacattcagtcaccgaacctgttgttagtattgtggagactgatgagcacatggtttcac 42891116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 19 - 70
Target Start/End: Complemental strand, 6886694 - 6886643
Alignment:
Q  19 agaggagtattagagcaattgtctatgattttgggacatttgtaatgttttc 70  Q
    ||||||||||||||| ||||| ||||||||| ||||||||||||||||||||    
T  6886694 agaggagtattagagtaattgcctatgatttcgggacatttgtaatgttttc 6886643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 21 - 70
Target Start/End: Complemental strand, 14271865 - 14271816
Alignment:
Q  21 aggagtattagagcaattgtctatgattttgggacatttgtaatgttttc 70  Q
    ||||||||||||| ||||| ||||||||||||||||||||| ||||||||    
T  14271865 aggagtattagagtaattgcctatgattttgggacatttgtgatgttttc 14271816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 21 - 70
Target Start/End: Complemental strand, 30832963 - 30832914
Alignment:
Q  21 aggagtattagagcaattgtctatgattttgggacatttgtaatgttttc 70  Q
    |||||||||||||||||||||||||||||  | |||||||||||||||||    
T  30832963 aggagtattagagcaattgtctatgatttcagaacatttgtaatgttttc 30832914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 22 - 70
Target Start/End: Original strand, 13833677 - 13833725
Alignment:
Q  22 ggagtattagagcaattgtctatgattttgggacatttgtaatgttttc 70  Q
    ||||||||||||||||||  |||||||| ||||||||||||||||||||    
T  13833677 ggagtattagagcaattgcttatgatttcgggacatttgtaatgttttc 13833725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 19 - 70
Target Start/End: Complemental strand, 14077148 - 14077097
Alignment:
Q  19 agaggagtattagagcaattgtctatgattttgggacatttgtaatgttttc 70  Q
    |||||||||||||| ||||||  ||||||||||||||||||||||| |||||    
T  14077148 agaggagtattagatcaattgcttatgattttgggacatttgtaatattttc 14077097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 19 - 70
Target Start/End: Original strand, 19784851 - 19784902
Alignment:
Q  19 agaggagtattagagcaattgtctatgattttgggacatttgtaatgttttc 70  Q
    |||||||||| |||||||||| |||| ||||||||| |||||||||||||||    
T  19784851 agaggagtataagagcaattgcctataattttgggatatttgtaatgttttc 19784902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 69
Target Start/End: Complemental strand, 19791420 - 19791369
Alignment:
Q  18 cagaggagtattagagcaattgtctatgattttgggacatttgtaatgtttt 69  Q
    ||||||||||||| | |||||||||||||||| |||||||||||||| ||||    
T  19791420 cagaggagtattaaaacaattgtctatgatttcgggacatttgtaatatttt 19791369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 23 - 70
Target Start/End: Original strand, 37527101 - 37527148
Alignment:
Q  23 gagtattagagcaattgtctatgattttgggacatttgtaatgttttc 70  Q
    ||||||||||||||||| ||||| ||| ||||||||||||||||||||    
T  37527101 gagtattagagcaattgcctatggtttcgggacatttgtaatgttttc 37527148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 20 - 70
Target Start/End: Original strand, 13313343 - 13313393
Alignment:
Q  20 gaggagtattagagcaattgtctatgattttgggacatttgtaatgttttc 70  Q
    ||||||||||||| |||||| ||||||||| ||||| ||||||||||||||    
T  13313343 gaggagtattagaacaattgcctatgatttcgggacttttgtaatgttttc 13313393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 83 - 141
Target Start/End: Original strand, 23571145 - 23571203
Alignment:
Q  83 tggaaccggtcgaagaacattcagtcaccaaacctgttgttagtattgagaagactgat 141  Q
    |||||||||| ||||| |||||||||||| || |||||||| |||| ||||||||||||    
T  23571145 tggaaccggttgaagatcattcagtcaccgaatctgttgtttgtatggagaagactgat 23571203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 20 - 70
Target Start/End: Original strand, 24388444 - 24388494
Alignment:
Q  20 gaggagtattagagcaattgtctatgattttgggacatttgtaatgttttc 70  Q
    ||||||||||||| | |||| ||||||||||||||| ||||||||||||||    
T  24388444 gaggagtattagaacgattgcctatgattttgggacttttgtaatgttttc 24388494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 21 - 69
Target Start/End: Original strand, 12342963 - 12343010
Alignment:
Q  21 aggagtattagagcaattgtctatgattttgggacatttgtaatgtttt 69  Q
    ||||||||||||||||||| | ||||||||||||||||||| |||||||    
T  12342963 aggagtattagagcaattg-caatgattttgggacatttgttatgtttt 12343010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 70
Target Start/End: Original strand, 25180791 - 25180843
Alignment:
Q  18 cagaggagtattagagcaattgtctatgattttgggacatttgtaatgttttc 70  Q
    ||||||||||||||| |||||| ||||||||| ||||| || |||||||||||    
T  25180791 cagaggagtattagatcaattgcctatgatttcgggacgttcgtaatgttttc 25180843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 19 - 70
Target Start/End: Original strand, 4007222 - 4007273
Alignment:
Q  19 agaggagtattagagcaattgtctatgattttgggacatttgtaatgttttc 70  Q
    |||||||||||||| |||||||| ||||||||| ||| |||||| |||||||    
T  4007222 agaggagtattagatcaattgtcaatgattttgagacgtttgtattgttttc 4007273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 19 - 70
Target Start/End: Complemental strand, 5856805 - 5856754
Alignment:
Q  19 agaggagtattagagcaattgtctatgattttgggacatttgtaatgttttc 70  Q
    |||||| ||||||| ||||||| |||| ||| ||||||||||||||||||||    
T  5856805 agaggaatattagatcaattgtttatggtttcgggacatttgtaatgttttc 5856754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 20 - 67
Target Start/End: Complemental strand, 19265847 - 19265800
Alignment:
Q  20 gaggagtattagagcaattgtctatgattttgggacatttgtaatgtt 67  Q
    ||||||||||||| |||||| ||||||||| ||||| |||||||||||    
T  19265847 gaggagtattagaacaattgcctatgatttcgggacttttgtaatgtt 19265800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 11 - 70
Target Start/End: Original strand, 24380416 - 24380475
Alignment:
Q  11 agcagcacagaggagtattagagcaattgtctatgattttgggacatttgtaatgttttc 70  Q
    ||||| |||||||||||||||| |||||| ||||||||| || |||||| || |||||||    
T  24380416 agcagaacagaggagtattagaacaattgcctatgatttcggaacatttctattgttttc 24380475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 70
Target Start/End: Original strand, 24583243 - 24583293
Alignment:
Q  20 gaggagtattagagcaattgtctatgattttgggacatttgtaatgttttc 70  Q
    ||||||||||||| | |||| ||||||||| ||||| ||||||||||||||    
T  24583243 gaggagtattagaacgattgcctatgatttcgggacttttgtaatgttttc 24583293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 70
Target Start/End: Complemental strand, 17980821 - 17980768
Alignment:
Q  17 acagaggagtattagagcaattgtctatgattttgggacatttgtaatgttttc 70  Q
    ||||| ||| |||||| ||||||  ||||||||||||||||||| |||||||||    
T  17980821 acagatgagcattagaacaattgcttatgattttgggacatttgcaatgttttc 17980768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 20 - 69
Target Start/End: Original strand, 23867901 - 23867950
Alignment:
Q  20 gaggagtattagagcaattgtctatgattttgggacatttgtaatgtttt 69  Q
    ||||||||||||| | |||| ||||||||| ||||| |||||||||||||    
T  23867901 gaggagtattagaacgattgcctatgatttcgggacttttgtaatgtttt 23867950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 21 - 70
Target Start/End: Original strand, 24109107 - 24109156
Alignment:
Q  21 aggagtattagagcaattgtctatgattttgggacatttgtaatgttttc 70  Q
    ||||||||||||||||||  ||||||||| ||||| |||| |||||||||    
T  24109107 aggagtattagagcaatttcctatgatttcgggacttttgaaatgttttc 24109156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 20 - 65
Target Start/End: Complemental strand, 26888511 - 26888466
Alignment:
Q  20 gaggagtattagagcaattgtctatgattttgggacatttgtaatg 65  Q
    |||||||||| || | |||||||||||||||||||| |||||||||    
T  26888511 gaggagtattggaacgattgtctatgattttgggacttttgtaatg 26888466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 57
Target Start/End: Original strand, 28275383 - 28275423
Alignment:
Q  17 acagaggagtattagagcaattgtctatgattttgggacat 57  Q
    ||||||||||||||||| ||||| ||||||||| |||||||    
T  28275383 acagaggagtattagagtaattgcctatgatttcgggacat 28275423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 50; Significance: 9e-20; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 17 - 70
Target Start/End: Complemental strand, 18832250 - 18832197
Alignment:
Q  17 acagaggagtattagagcaattgtctatgattttgggacatttgtaatgttttc 70  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  18832250 acagaggagtattagagcaattgtctatgatttcgggacatttgtaatgttttc 18832197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 17 - 64
Target Start/End: Complemental strand, 26122410 - 26122363
Alignment:
Q  17 acagaggagtattagagcaattgtctatgattttgggacatttgtaat 64  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||    
T  26122410 acagaggagtattagagcaattgtctatgatttcgggacatttgtaat 26122363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 17 - 70
Target Start/End: Original strand, 17469627 - 17469680
Alignment:
Q  17 acagaggagtattagagcaattgtctatgattttgggacatttgtaatgttttc 70  Q
    ||||||||||||||||||||||| |||||||||||| ||| |||||||||||||    
T  17469627 acagaggagtattagagcaattgcctatgattttggaacagttgtaatgttttc 17469680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 19 - 69
Target Start/End: Original strand, 24513257 - 24513307
Alignment:
Q  19 agaggagtattagagcaattgtctatgattttgggacatttgtaatgtttt 69  Q
    ||||||||||||||| | ||| |||||||||||||||||||||||||||||    
T  24513257 agaggagtattagagaatttgcctatgattttgggacatttgtaatgtttt 24513307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 17 - 70
Target Start/End: Original strand, 31600144 - 31600197
Alignment:
Q  17 acagaggagtattagagcaattgtctatgattttgggacatttgtaatgttttc 70  Q
    ||||| ||||||||||| ||||||||||||||| |||||||||||||| |||||    
T  31600144 acagaagagtattagagtaattgtctatgatttcgggacatttgtaatattttc 31600197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 19 - 70
Target Start/End: Complemental strand, 29799070 - 29799019
Alignment:
Q  19 agaggagtattagagcaattgtctatgattttgggacatttgtaatgttttc 70  Q
    |||||||||| ||| ||||||||||||||| |||||||||| ||||||||||    
T  29799070 agaggagtataagaacaattgtctatgattctgggacatttataatgttttc 29799019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 70
Target Start/End: Original strand, 24263820 - 24263872
Alignment:
Q  18 cagaggagtattagagcaattgtctatgattttgggacatttgtaatgttttc 70  Q
    ||||||| ||||| | |||||  ||||||||||||||||||||||||||||||    
T  24263820 cagaggattattatatcaatttcctatgattttgggacatttgtaatgttttc 24263872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 23 - 70
Target Start/End: Original strand, 19003840 - 19003887
Alignment:
Q  23 gagtattagagcaattgtctatgattttgggacatttgtaatgttttc 70  Q
    |||||||||| ||||||||||||||||  |||| ||||||||||||||    
T  19003840 gagtattagaacaattgtctatgatttcaggacttttgtaatgttttc 19003887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 19 - 70
Target Start/End: Complemental strand, 24188924 - 24188873
Alignment:
Q  19 agaggagtattagagcaattgtctatgattttgggacatttgtaatgttttc 70  Q
    |||||||||||||||||||||  |||||||| | |||| |||||||||||||    
T  24188924 agaggagtattagagcaattgaatatgatttcgagacaattgtaatgttttc 24188873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 70
Target Start/End: Original strand, 16521975 - 16522025
Alignment:
Q  20 gaggagtattagagcaattgtctatgattttgggacatttgtaatgttttc 70  Q
    ||||||||||||| | |||| ||||||||||||||| |||| |||||||||    
T  16521975 gaggagtattagaacgattgcctatgattttgggacttttgcaatgttttc 16522025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 70
Target Start/End: Original strand, 19006920 - 19006970
Alignment:
Q  20 gaggagtattagagcaattgtctatgattttgggacatttgtaatgttttc 70  Q
    ||||||||||||| | |||| ||||||||| ||||| ||||||||||||||    
T  19006920 gaggagtattagaacgattgcctatgatttcgggacttttgtaatgttttc 19006970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 70
Target Start/End: Complemental strand, 20860360 - 20860314
Alignment:
Q  24 agtattagagcaattgtctatgattttgggacatttgtaatgttttc 70  Q
    ||||||||| |||||| ||||||||||||||| |||||||| |||||    
T  20860360 agtattagaacaattgcctatgattttgggacttttgtaatattttc 20860314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 72
Target Start/End: Original strand, 23214897 - 23214949
Alignment:
Q  20 gaggagtattagagcaattgtctatgattttgggacatttgtaatgttttcca 72  Q
    ||||||||| |||| ||||| ||||||||| |||||  |||||||||||||||    
T  23214897 gaggagtatgagagaaattgcctatgatttcgggactattgtaatgttttcca 23214949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 63
Target Start/End: Complemental strand, 25920853 - 25920813
Alignment:
Q  23 gagtattagagcaattgtctatgattttgggacatttgtaa 63  Q
    ||||||||||||||||| ||||||||| |||||| ||||||    
T  25920853 gagtattagagcaattgcctatgatttcgggacaattgtaa 25920813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 69
Target Start/End: Complemental strand, 28280309 - 28280257
Alignment:
Q  19 agaggagtattagagcaattgtctat-gattttgggaca-tttgtaatgtttt 69  Q
    |||||||||||||| ||||||||||| | |||||||||| |||||||||||||    
T  28280309 agaggagtattagaacaattgtctatggtttttgggacattttgtaatgtttt 28280257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0043 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 19 - 70
Target Start/End: Original strand, 88507 - 88558
Alignment:
Q  19 agaggagtattagagcaattgtctatgattttgggacatttgtaatgttttc 70  Q
    |||||||| ||||||||||||||||||||||||||||||||||| |||||||    
T  88507 agaggagtcttagagcaattgtctatgattttgggacatttgtattgttttc 88558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 44; Significance: 4e-16; HSPs: 19)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 23 - 70
Target Start/End: Original strand, 27116298 - 27116345
Alignment:
Q  23 gagtattagagcaattgtctatgattttgggacatttgtaatgttttc 70  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||    
T  27116298 gagtattagagaaattgtctatgattttgggacatttgtaatgttttc 27116345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 22 - 70
Target Start/End: Original strand, 14235358 - 14235406
Alignment:
Q  22 ggagtattagagcaattgtctatgattttgggacatttgtaatgttttc 70  Q
    ||||||||||| ||||||  |||||||||||||||||||||||||||||    
T  14235358 ggagtattagaccaattgcttatgattttgggacatttgtaatgttttc 14235406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 18 - 70
Target Start/End: Original strand, 15571758 - 15571810
Alignment:
Q  18 cagaggagtattagagcaattgtctatgattttgggacatttgtaatgttttc 70  Q
    ||||||||||||||| ||||||||||||||||| |||| |||||||| |||||    
T  15571758 cagaggagtattagatcaattgtctatgattttaggacgtttgtaatattttc 15571810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 17 - 70
Target Start/End: Original strand, 15526865 - 15526918
Alignment:
Q  17 acagaggagtattagagcaattgtctatgattttgggacatttgtaatgttttc 70  Q
    |||| |||||||||||| ||||| ||||||||| | ||||||||||||||||||    
T  15526865 acaggggagtattagagtaattgcctatgatttcgagacatttgtaatgttttc 15526918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 17 - 70
Target Start/End: Complemental strand, 16114828 - 16114775
Alignment:
Q  17 acagaggagtattagagcaattgtctatgattttgggacatttgtaatgttttc 70  Q
    ||||| ||||||||||||||||  | ||||||| ||||||||||||||||||||    
T  16114828 acagatgagtattagagcaatttcccatgatttagggacatttgtaatgttttc 16114775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 17 - 70
Target Start/End: Original strand, 22626223 - 22626276
Alignment:
Q  17 acagaggagtattagagcaattgtctatgattttgggacatttgtaatgttttc 70  Q
    ||||||||||||||||| | ||  |||||||||||||| |||||||||||||||    
T  22626223 acagaggagtattagagaatttacctatgattttgggaaatttgtaatgttttc 22626276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 70
Target Start/End: Original strand, 18098318 - 18098370
Alignment:
Q  18 cagaggagtattagagcaattgtctatgattttgggacatttgtaatgttttc 70  Q
    ||||||||||||||| |||||| ||||||||| | |||||||||||| |||||    
T  18098318 cagaggagtattagatcaattgcctatgatttcgagacatttgtaatattttc 18098370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 22 - 70
Target Start/End: Complemental strand, 26022418 - 26022370
Alignment:
Q  22 ggagtattagagcaattgtctatgattttgggacatttgtaatgttttc 70  Q
    |||||||| |||||||||  |||||||| ||||||||||||||||||||    
T  26022418 ggagtattggagcaattgcttatgatttcgggacatttgtaatgttttc 26022370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 19 - 70
Target Start/End: Complemental strand, 27546410 - 27546359
Alignment:
Q  19 agaggagtattagagcaattgtctatgattttgggacatttgtaatgttttc 70  Q
    ||||||||||||||   |||||||||||||||| ||| ||||||||||||||    
T  27546410 agaggagtattagaatgattgtctatgattttgagacttttgtaatgttttc 27546359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 70
Target Start/End: Complemental strand, 729161 - 729111
Alignment:
Q  20 gaggagtattagagcaattgtctatgattttgggacatttgtaatgttttc 70  Q
    ||||||||||||| | ||||||||||||||  |||| ||||||||||||||    
T  729161 gaggagtattagaacgattgtctatgatttcaggacttttgtaatgttttc 729111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 70
Target Start/End: Original strand, 16915268 - 16915318
Alignment:
Q  20 gaggagtattagagcaattgtctatgattttgggacatttgtaatgttttc 70  Q
    ||||||||||||| | |||| |||||||||||| || ||||||||||||||    
T  16915268 gaggagtattagaacgattgcctatgattttggaacttttgtaatgttttc 16915318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 70
Target Start/End: Original strand, 18734657 - 18734707
Alignment:
Q  20 gaggagtattagagcaattgtctatgattttgggacatttgtaatgttttc 70  Q
    ||||||||||||| | |||| ||||||||||| ||| ||||||||||||||    
T  18734657 gaggagtattagaacgattgcctatgattttgagacttttgtaatgttttc 18734707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 70
Target Start/End: Original strand, 22426587 - 22426637
Alignment:
Q  20 gaggagtattagagcaattgtctatgattttgggacatttgtaatgttttc 70  Q
    ||||||||||||| | |||| ||||||||| ||||| ||||||||||||||    
T  22426587 gaggagtattagaacgattgcctatgatttcgggacttttgtaatgttttc 22426637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 69
Target Start/End: Complemental strand, 26652602 - 26652552
Alignment:
Q  19 agaggagtattagagcaattgtctatgattttgggacatttgtaatgtttt 69  Q
    ||||||||||||||  |||||  |||||||||||||||||||||| |||||    
T  26652602 agaggagtattagaaaaattgcttatgattttgggacatttgtaacgtttt 26652552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 70
Target Start/End: Complemental strand, 35133909 - 35133859
Alignment:
Q  20 gaggagtattagagcaattgtctatgattttgggacatttgtaatgttttc 70  Q
    ||||||||||| || ||||| ||| |||||||| |||||||||||||||||    
T  35133909 gaggagtattaaagtaattgcctacgattttggaacatttgtaatgttttc 35133859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 21 - 70
Target Start/End: Original strand, 15542381 - 15542430
Alignment:
Q  21 aggagtattagagcaattgtctatgattttgggacatttgtaatgttttc 70  Q
    |||||||||||| | |||| ||||||||| ||||| ||||||||||||||    
T  15542381 aggagtattagaacgattgcctatgatttcgggacttttgtaatgttttc 15542430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 70
Target Start/End: Complemental strand, 21848654 - 21848601
Alignment:
Q  17 acagaggagtattagagcaattgtctatgattttgggacatttgtaatgttttc 70  Q
    |||||||||||||||||||||||  |||||||| |  |||||||||| ||||||    
T  21848654 acagaggagtattagagcaattgcttatgatttcgacacatttgtaacgttttc 21848601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 70
Target Start/End: Complemental strand, 22665809 - 22665761
Alignment:
Q  22 ggagtattagagcaattgtctatgattttgggacatttgtaatgttttc 70  Q
    |||||| ||||| ||||| |||||||||  |||||||||||||||||||    
T  22665809 ggagtactagagaaattgcctatgatttcaggacatttgtaatgttttc 22665761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 69
Target Start/End: Complemental strand, 44797145 - 44797093
Alignment:
Q  17 acagaggagtattagagcaattgtctatgattttgggacatttgtaatgtttt 69  Q
    |||||| |||||||||| ||||| |||||||||   |||||||||||||||||    
T  44797145 acagagaagtattagagtaattgcctatgatttcaagacatttgtaatgtttt 44797093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0451 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 2)
Name: scaffold0451
Description:

Target: scaffold0451; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 20 - 70
Target Start/End: Complemental strand, 5755 - 5705
Alignment:
Q  20 gaggagtattagagcaattgtctatgattttgggacatttgtaatgttttc 70  Q
    ||||||||||||| |||||||||||||||||||||| ||||||||||||||    
T  5755 gaggagtattagaacaattgtctatgattttgggacttttgtaatgttttc 5705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0451; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 70
Target Start/End: Original strand, 10162 - 10215
Alignment:
Q  17 acagaggagtattagagcaattgtctatgattttgggacatttgtaatgttttc 70  Q
    |||||||||||||||| ||||||||||||||||    ||||||||| |||||||    
T  10162 acagaggagtattagatcaattgtctatgatttcataacatttgtattgttttc 10215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 17 - 70
Target Start/End: Complemental strand, 10418585 - 10418532
Alignment:
Q  17 acagaggagtattagagcaattgtctatgattttgggacatttgtaatgttttc 70  Q
    ||||||||||||||||||||||| ||||||||| || |||||||||||||||||    
T  10418585 acagaggagtattagagcaattgcctatgatttcggaacatttgtaatgttttc 10418532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 17 - 70
Target Start/End: Complemental strand, 21234131 - 21234078
Alignment:
Q  17 acagaggagtattagagcaattgtctatgattttgggacatttgtaatgttttc 70  Q
    ||||||||||||||||| | |||||||||||| |||||||||||||||||||||    
T  21234131 acagaggagtattagagaatttgtctatgattctgggacatttgtaatgttttc 21234078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 17 - 70
Target Start/End: Complemental strand, 21502882 - 21502829
Alignment:
Q  17 acagaggagtattagagcaattgtctatgattttgggacatttgtaatgttttc 70  Q
    |||||||||||||||| |||||| ||||||||| ||||||||||||||||||||    
T  21502882 acagaggagtattagaacaattgcctatgatttcgggacatttgtaatgttttc 21502829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 19 - 70
Target Start/End: Complemental strand, 1586217 - 1586166
Alignment:
Q  19 agaggagtattagagcaattgtctatgattttgggacatttgtaatgttttc 70  Q
    ||||||| |||||||||||||||||||||||  |||||||||||||||||||    
T  1586217 agaggagcattagagcaattgtctatgatttcaggacatttgtaatgttttc 1586166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 20 - 70
Target Start/End: Original strand, 23173757 - 23173807
Alignment:
Q  20 gaggagtattagagcaattgtctatgattttgggacatttgtaatgttttc 70  Q
    ||||||||||||| ||||||||||||||||||| || ||||||||||||||    
T  23173757 gaggagtattagaacaattgtctatgattttggaacttttgtaatgttttc 23173807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 19 - 70
Target Start/End: Complemental strand, 10332430 - 10332379
Alignment:
Q  19 agaggagtattagagcaattgtctatgattttgggacatttgtaatgttttc 70  Q
    |||||||||||||| ||||||  ||| |||||||||||||||||||||||||    
T  10332430 agaggagtattagatcaattgcttatcattttgggacatttgtaatgttttc 10332379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 24 - 70
Target Start/End: Complemental strand, 9288931 - 9288885
Alignment:
Q  24 agtattagagcaattgtctatgattttgggacatttgtaatgttttc 70  Q
    ||||||||| |||||||||||||||||| |||| |||||||||||||    
T  9288931 agtattagaacaattgtctatgattttgtgacacttgtaatgttttc 9288885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 24 - 70
Target Start/End: Complemental strand, 9298723 - 9298677
Alignment:
Q  24 agtattagagcaattgtctatgattttgggacatttgtaatgttttc 70  Q
    ||||||||| |||||||||||||||||| |||| |||||||||||||    
T  9298723 agtattagaacaattgtctatgattttgtgacacttgtaatgttttc 9298677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 17 - 70
Target Start/End: Complemental strand, 6018386 - 6018333
Alignment:
Q  17 acagaggagtattagagcaattgtctatgattttgggacatttgtaatgttttc 70  Q
    ||||||||||||||||  ||||| |||||||||| ||||||||||| |||||||    
T  6018386 acagaggagtattagattaattgcctatgattttaggacatttgtattgttttc 6018333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 17 - 70
Target Start/End: Original strand, 6039366 - 6039419
Alignment:
Q  17 acagaggagtattagagcaattgtctatgattttgggacatttgtaatgttttc 70  Q
    |||||| | |||||||||||||||| ||||| ||||||||||||||| ||||||    
T  6039366 acagagtaatattagagcaattgtcgatgatattgggacatttgtaaagttttc 6039419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 70
Target Start/End: Original strand, 23127964 - 23128016
Alignment:
Q  18 cagaggagtattagagcaattgtctatgattttgggacatttgtaatgttttc 70  Q
    ||||||||||||||| ||||||  ||||||||||| |||||||||| ||||||    
T  23127964 cagaggagtattagatcaattgcttatgattttggaacatttgtaaggttttc 23128016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 19 - 70
Target Start/End: Complemental strand, 9918193 - 9918142
Alignment:
Q  19 agaggagtattagagcaattgtctatgattttgggacatttgtaatgttttc 70  Q
    ||||| |||||||||||||||| ||||| || |||| |||||||||||||||    
T  9918193 agaggggtattagagcaattgtttatgacttcgggagatttgtaatgttttc 9918142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 19 - 70
Target Start/End: Complemental strand, 9926105 - 9926054
Alignment:
Q  19 agaggagtattagagcaattgtctatgattttgggacatttgtaatgttttc 70  Q
    ||||| |||||||||||||||| ||||| || |||| |||||||||||||||    
T  9926105 agaggggtattagagcaattgtttatgacttcgggagatttgtaatgttttc 9926054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 70
Target Start/End: Original strand, 5236938 - 5236988
Alignment:
Q  20 gaggagtattagagcaattgtctatgattttgggacatttgtaatgttttc 70  Q
    |||||| |||||| |||||  ||||||||||||||| ||||||||||||||    
T  5236938 gaggaggattagaacaatttcctatgattttgggacttttgtaatgttttc 5236988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 70
Target Start/End: Original strand, 8317513 - 8317563
Alignment:
Q  20 gaggagtattagagcaattgtctatgattttgggacatttgtaatgttttc 70  Q
    ||||||||||||| | |||| ||||||||| ||||| ||||||||||||||    
T  8317513 gaggagtattagaacgattgcctatgatttcgggacttttgtaatgttttc 8317563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 70
Target Start/End: Complemental strand, 9978310 - 9978260
Alignment:
Q  20 gaggagtattagagcaattgtctatgattttgggacatttgtaatgttttc 70  Q
    ||||||||||||| |  ||| ||||||||||||||| ||||||||||||||    
T  9978310 gaggagtattagaacggttgcctatgattttgggacttttgtaatgttttc 9978260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 70
Target Start/End: Complemental strand, 14195776 - 14195723
Alignment:
Q  17 acagaggagtattagagcaattgtctatgattttgggacatttgtaatgttttc 70  Q
    ||||||||||||||||||| |||  |||||||| |||| |||||||| ||||||    
T  14195776 acagaggagtattagagcagttgcttatgatttcgggaaatttgtaacgttttc 14195723  T

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Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 70
Target Start/End: Complemental strand, 21109153 - 21109101
Alignment:
Q  19 agaggagtattagagcaattgtctatgattttgggaca-tttgtaatgttttc 70  Q
    |||||||||||||| ||| ||||||| ||||||||| | ||||||||||||||    
T  21109153 agaggagtattagaacaactgtctataattttgggatattttgtaatgttttc 21109101  T

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Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 69
Target Start/End: Complemental strand, 23897268 - 23897216
Alignment:
Q  17 acagaggagtattagagcaattgtctatgattttgggacatttgtaatgtttt 69  Q
    |||||||||||||| | |||||| |||||||||  ||||||||||||| ||||    
T  23897268 acagaggagtattatatcaattgcctatgatttcaggacatttgtaatatttt 23897216  T

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Target: chr4 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 22)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 20 - 69
Target Start/End: Complemental strand, 18750849 - 18750800
Alignment:
Q  20 gaggagtattagagcaattgtctatgattttgggacatttgtaatgtttt 69  Q
    |||||||||||||||||||| ||||||||||||||| |||||||||||||    
T  18750849 gaggagtattagagcaattgcctatgattttgggacttttgtaatgtttt 18750800  T

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Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 22 - 70
Target Start/End: Original strand, 19883586 - 19883634
Alignment:
Q  22 ggagtattagagcaattgtctatgattttgggacatttgtaatgttttc 70  Q
    ||||||||||| |||||||||||||||| ||||||||||||||||||||    
T  19883586 ggagtattagaacaattgtctatgatttcgggacatttgtaatgttttc 19883634  T

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Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 19 - 70
Target Start/End: Complemental strand, 23083726 - 23083675
Alignment:
Q  19 agaggagtattagagcaattgtctatgattttgggacatttgtaatgttttc 70  Q
    |||||||||||||||||||||| |||||||||||||| | ||||||||||||    
T  23083726 agaggagtattagagcaattgtttatgattttgggacgtctgtaatgttttc 23083675  T

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Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 11 - 69
Target Start/End: Original strand, 9263413 - 9263471
Alignment:
Q  11 agcagcacagaggagtattagagcaattgtctatgattttgggacatttgtaatgtttt 69  Q
    ||||| || ||||||||||||| ||||||||||| |||||||| |||||||||||||||    
T  9263413 agcagaactgaggagtattagaacaattgtctataattttgggtcatttgtaatgtttt 9263471  T

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Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 21 - 70
Target Start/End: Complemental strand, 25025130 - 25025081
Alignment:
Q  21 aggagtattagagcaattgtctatgattttgggacatttgtaatgttttc 70  Q
    ||||| ||||| ||||||| ||||||||||||||||||||||||||||||    
T  25025130 aggagcattagtgcaattgcctatgattttgggacatttgtaatgttttc 25025081  T

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Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 19 - 70
Target Start/End: Original strand, 19667019 - 19667071
Alignment:
Q  19 agaggagtattagagcaattgtctatgattt-tgggacatttgtaatgttttc 70  Q
    |||||||||||||| |||||| ||||||||| |||||||||||||||||||||    
T  19667019 agaggagtattagaacaattgcctatgatttctgggacatttgtaatgttttc 19667071  T

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Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 20 - 70
Target Start/End: Complemental strand, 11241123 - 11241072
Alignment:
Q  20 gaggagtattagagcaattgtctatgatttt-gggacatttgtaatgttttc 70  Q
    ||||||||||||| ||||||| ||||||||| ||||||||||||||||||||    
T  11241123 gaggagtattagaacaattgtttatgatttttgggacatttgtaatgttttc 11241072  T

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Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 19 - 70
Target Start/End: Complemental strand, 17434460 - 17434409
Alignment:
Q  19 agaggagtattagagcaattgtctatgattttgggacatttgtaatgttttc 70  Q
    |||||||||||||| ||||||  |||||||| ||||||||||||||||||||    
T  17434460 agaggagtattagatcaattgcttatgatttcgggacatttgtaatgttttc 17434409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 17 - 70
Target Start/End: Complemental strand, 14573477 - 14573424
Alignment:
Q  17 acagaggagtattagagcaattgtctatgattttgggacatttgtaatgttttc 70  Q
    |||||||||||||||||||||||||||| ||||   || |||||||||||||||    
T  14573477 acagaggagtattagagcaattgtctattatttcatgatatttgtaatgttttc 14573424  T

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Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 21 - 70
Target Start/End: Original strand, 20828212 - 20828261
Alignment:
Q  21 aggagtattagagcaattgtctatgattttgggacatttgtaatgttttc 70  Q
    |||||||||| | |||||| ||||||||||||||||||||||||| ||||    
T  20828212 aggagtattacaacaattgcctatgattttgggacatttgtaatggtttc 20828261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 70
Target Start/End: Complemental strand, 5691783 - 5691731
Alignment:
Q  18 cagaggagtattagagcaattgtctatgattttgggacatttgtaatgttttc 70  Q
    ||||||||||||||| ||||||||||||||||  | ||||||||| |||||||    
T  5691783 cagaggagtattagatcaattgtctatgatttcagaacatttgtattgttttc 5691731  T

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Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 70
Target Start/End: Original strand, 19538954 - 19539006
Alignment:
Q  19 agaggagtattagagcaattgtctatgattt-tgggacatttgtaatgttttc 70  Q
    |||||||||||||| |||||| ||||||||| || ||||||||||||||||||    
T  19538954 agaggagtattagaacaattgcctatgatttctgagacatttgtaatgttttc 19539006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 70
Target Start/End: Complemental strand, 7583817 - 7583767
Alignment:
Q  20 gaggagtattagagcaattgtctatgattttgggacatttgtaatgttttc 70  Q
    ||||||||||||| |||||| |||||||||  |||| ||||||||||||||    
T  7583817 gaggagtattagaacaattgcctatgatttcaggacttttgtaatgttttc 7583767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 70
Target Start/End: Complemental strand, 10106320 - 10106270
Alignment:
Q  20 gaggagtattagagcaattgtctatgattttgggacatttgtaatgttttc 70  Q
    ||||||||||| | |||||||||||||||| ||||| | ||||||||||||    
T  10106320 gaggagtattacaacaattgtctatgatttcgggacttctgtaatgttttc 10106270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 64
Target Start/End: Original strand, 22350310 - 22350356
Alignment:
Q  18 cagaggagtattagagcaattgtctatgattttgggacatttgtaat 64  Q
    |||| |||||||||| ||||||||||| |||| ||||||||||||||    
T  22350310 cagaagagtattagatcaattgtctatcatttcgggacatttgtaat 22350356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 21 - 70
Target Start/End: Original strand, 11512099 - 11512148
Alignment:
Q  21 aggagtattagagcaattgtctatgattttgggacatttgtaatgttttc 70  Q
    ||||||||||||  |||||||||||||||  ||||||||||||| |||||    
T  11512099 aggagtattagaataattgtctatgatttcaggacatttgtaatattttc 11512148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 19 - 71
Target Start/End: Original strand, 26047215 - 26047268
Alignment:
Q  19 agaggagtattagagcaattgtctatgatttt-gggacatttgtaatgttttcc 71  Q
    |||||||| ||||| |||||| |||||||||| |||| ||||||||||||||||    
T  26047215 agaggagttttagaacaattgcctatgatttttgggatatttgtaatgttttcc 26047268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 19 - 71
Target Start/End: Original strand, 26052396 - 26052449
Alignment:
Q  19 agaggagtattagagcaattgtctatgatttt-gggacatttgtaatgttttcc 71  Q
    |||||||| ||||| |||||| |||||||||| |||| ||||||||||||||||    
T  26052396 agaggagttttagaacaattgcctatgatttttgggatatttgtaatgttttcc 26052449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 70
Target Start/End: Original strand, 19547122 - 19547174
Alignment:
Q  19 agaggagtattagagcaattgtctatga-ttttgggacatttgtaatgttttc 70  Q
    |||||||||||| |||||||| |||| | |||||||||| |||||||||||||    
T  19547122 agaggagtattaaagcaattgcctataacttttgggacacttgtaatgttttc 19547174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 70
Target Start/End: Original strand, 19556613 - 19556661
Alignment:
Q  22 ggagtattagagcaattgtctatgattttgggacatttgtaatgttttc 70  Q
    ||||||||||| | |||| |||||||||||| || ||||||||||||||    
T  19556613 ggagtattagaacgattgcctatgattttggaacttttgtaatgttttc 19556661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 70
Target Start/End: Original strand, 23970734 - 23970785
Alignment:
Q  21 aggagtattagagcaattg--tctatgattttgggacatttgtaatgttttc 70  Q
    |||||||||||||||||||  | |||||||| || |||||||||||||||||    
T  23970734 aggagtattagagcaattgcttatatgatttcggaacatttgtaatgttttc 23970785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 70
Target Start/End: Complemental strand, 25096323 - 25096275
Alignment:
Q  22 ggagtattagagcaattgtctatgattttgggacatttgtaatgttttc 70  Q
    ||||||||||| | |||| ||||||||| ||||| ||||||||||||||    
T  25096323 ggagtattagaacgattgcctatgatttcgggacttttgtaatgttttc 25096275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 17 - 70
Target Start/End: Complemental strand, 41367 - 41314
Alignment:
Q  17 acagaggagtattagagcaattgtctatgattttgggacatttgtaatgttttc 70  Q
    |||||||||||||||| |||||| |||||||||  | |||||||||||||||||    
T  41367 acagaggagtattagatcaattgcctatgatttcagaacatttgtaatgttttc 41314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 17 - 70
Target Start/End: Original strand, 243899 - 243952
Alignment:
Q  17 acagaggagtattagagcaattgtctatgattttgggacatttgtaatgttttc 70  Q
    |||||||||||||||||||||||||||| ||||   || |||||||||||||||    
T  243899 acagaggagtattagagcaattgtctattatttcatgatatttgtaatgttttc 243952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0086 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0086
Description:

Target: scaffold0086; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 19 - 52
Target Start/End: Original strand, 12857 - 12890
Alignment:
Q  19 agaggagtattagagcaattgtctatgattttgg 52  Q
    ||||||||||||||||||||| ||||||||||||    
T  12857 agaggagtattagagcaattgcctatgattttgg 12890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0360 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0360
Description:

Target: scaffold0360; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 26 - 70
Target Start/End: Original strand, 16545 - 16589
Alignment:
Q  26 tattagagcaattgtctatgattttgggacatttgtaatgttttc 70  Q
    ||||||| ||||||| |||||||| |||||||||||||| |||||    
T  16545 tattagatcaattgtttatgatttcgggacatttgtaatattttc 16589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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