View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17287_low_79 (Length: 236)
Name: NF17287_low_79
Description: NF17287
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17287_low_79 |
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Alignment Details
Target: chr2 (Bit Score: 147; Significance: 1e-77; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 36542706 - 36542491
Alignment:
| Q |
1 |
cataccttaagttgtagaaaaataaatggagtgccatatgtatggagatttcatnnnnnnntatatctttgtattnnnnnnnntacaaataatgtgtaat |
100 |
Q |
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| T |
36542706 |
cataccttaagttgtagaaaaataaatggagtgtcatatgtatggagattttataaaaaaatatatctttgtattaaaa----tacaaataatgtgtaat |
36542611 |
T |
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| Q |
101 |
taaatgttgtagattatacgtctgagttatgtgttgttggaagttatgcacaaaataaaataagtttgaatcttgagtcatgcacacatttattagtggg |
200 |
Q |
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| T |
36542610 |
ttaatgttttagattatacgtc-gagttatgtgttgttggaagttatgcacaaaataaaataagtttgaatcttgagtcatgcacacatttattagtggg |
36542512 |
T |
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| Q |
201 |
tttcatttttatggaaattat |
221 |
Q |
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||||||||||||||||||||| |
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| T |
36542511 |
tttcatttttatggaaattat |
36542491 |
T |
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