View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17287_low_8 (Length: 560)
Name: NF17287_low_8
Description: NF17287
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17287_low_8 |
 | |
|
| [»] scaffold0074 (1 HSPs) |
| | |
|
Alignment Details
Target: chr5 (Bit Score: 513; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 513; E-Value: 0
Query Start/End: Original strand, 1 - 537
Target Start/End: Complemental strand, 41723094 - 41722558
Alignment:
| Q |
1 |
atgctatttataggaccgtaaaagccatgcctcaaccattttcatttattaccatagataatagccaaactgccaaccaatttatgttgacaatgttggc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41723094 |
atgctatttataggaccgtaaaagccatgcctcaaccattttcatttattaccatagataatagccaaactgccaaccaatttatgttgacaatgttggc |
41722995 |
T |
|
| Q |
101 |
accgaaaatctgaatggtaaattgcaaagcccttttgtcaaacatgtattactgccttgtgaaaacatatcaacaaaaggtgactttatggcttatgtgt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41722994 |
accgaaaatctgaatggtaaattgcaaaacccttttgtcaaacatgtattactgccatgtgaaaacatatcaacaaaaggtgactttatggcttatgtgt |
41722895 |
T |
|
| Q |
201 |
tcacacatgttcacaatctcccacttaaagtcacttttgtgagcttccaaaatctctctaccttgccaactccagttgctacgtttccaataggccatac |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41722894 |
tcacacatgttcacaatctcccacttaaagtcacttttgtgagcttccaaaatctctctaccttgccaactccagttgctacgtttccaataggccatac |
41722795 |
T |
|
| Q |
301 |
gaggatcgacaccatacaaacttatcagtgttgatcggctttgtcattacatctgctagattatcattggtgtgaatcttctgcatgtccacacttccct |
400 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41722794 |
gaggatcgacaccatacaaacttatcagcgttgatcggctttgtcattacatctgctagattatcattggtgtgaatcttctgcatgtccacacttccct |
41722695 |
T |
|
| Q |
401 |
cctctactacttcgcgaacaaaatgatattgaacgcctatgtgcttcgtccttgaatgaaaagctggattccttgcaatgtgcaaggcactctgactgtc |
500 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
41722694 |
cctctactacttcgcgaacaaaatgatattgaacgcctatgtgtttcgtccttgaatgaaaagctggattccttgcaatatgcaaggcactctgactgtc |
41722595 |
T |
|
| Q |
501 |
acaatacacagtaatttgttcctgtttgtgcccgagt |
537 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||| |
|
|
| T |
41722594 |
acaatacacagtaatttgttcctgcttgtgcccgagt |
41722558 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 207 - 499
Target Start/End: Complemental strand, 34359667 - 34359375
Alignment:
| Q |
207 |
atgttcacaatctcccacttaaagtcacttttgtgagcttccaaaatctctctaccttgccaactccagttgctacgtttccaataggccatacgaggat |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| | |||| | |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34359667 |
atgttcacaatctcccacttaaagtcacttttgtgagcattcaaagtatctctaccttgccaactccagttgctacgtttccaataggccatacgaggat |
34359568 |
T |
|
| Q |
307 |
cgacaccatacaaacttatcagtgttgatcggctttgtcattacatctgctagattatcattggtgtgaatcttctgcatgtccacacttccctcctcta |
406 |
Q |
| |
|
|||||||||| |||||| |||| |||||||||||||||||||||||| ||||| |||||||||||||||||||| ||||| ||||| ||||||||||| | |
|
|
| T |
34359567 |
cgacaccatataaacttgtcagcgttgatcggctttgtcattacatccgctaggttatcattggtgtgaatcttttgcatatccacgcttccctcctcca |
34359468 |
T |
|
| Q |
407 |
ctacttcgcgaacaaaatgatattgaacgcctatgtgcttcgtccttgaatgaaaagctggattccttgcaatgtgcaaggcactctgactgt |
499 |
Q |
| |
|
||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
34359467 |
ctacttctcgaacaaaatgatattgaacgccaatgtgcttcgtccttgaatgaaaagctggattccttgcaatgtgtaaggcactctgactgt |
34359375 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 215
Target Start/End: Complemental strand, 41718368 - 41718154
Alignment:
| Q |
1 |
atgctatttataggaccgtaaaagccatgcctcaaccattttcatttattaccatagataatagccaaactgccaaccaatttatgttgacaatgttggc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41718368 |
atgctatttataggaccgtaaaagccatgcctcaaccattttcatttattaccatagataatagccaaactgccaaccaatttatgttgacaatgttggc |
41718269 |
T |
|
| Q |
101 |
accgaaaatctgaatggtaaattgcaaagcccttttgtcaaacatgtattactgccttgtgaaaacatatcaacaaaaggtgactttatggcttatgtgt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41718268 |
accgaaaatctgaatggtaaattgcaaaacccttttgtcaaacatgtattactgccatgtgaaaacatatcaacaaaaggtgactttatggcttatgtgt |
41718169 |
T |
|
| Q |
201 |
tcacacatgttcaca |
215 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
41718168 |
tcacacatgttcaca |
41718154 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 294; Significance: 1e-165; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 208 - 537
Target Start/End: Original strand, 48697661 - 48697990
Alignment:
| Q |
208 |
tgttcacaatctcccacttaaagtcacttttgtgagcttccaaaatctctctaccttgccaactccagttgctacgtttccaataggccatacgaggatc |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||| | ||||||||||||||||||||||||||||||||| |
|
|
| T |
48697661 |
tgttcacaatctcccacttaaagtcacttttgtgagctctcaaaatctctctaccttgccgacttcggttgctacgtttccaataggccatacgaggatc |
48697760 |
T |
|
| Q |
308 |
gacaccatacaaacttatcagtgttgatcggctttgtcattacatctgctagattatcattggtgtgaatcttctgcatgtccacacttccctcctctac |
407 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48697761 |
gacaccatacaaacttatcagcgttgatcggctttgtcattacatctgctagattatcattggtgtgaatcttctgcatgtccacacttccctcctctac |
48697860 |
T |
|
| Q |
408 |
tacttcgcgaacaaaatgatattgaacgcctatgtgcttcgtccttgaatgaaaagctggattccttgcaatgtgcaaggcactctgactgtcacaatac |
507 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
48697861 |
tacttcgcgaacaaaatgatattgaacgcctatgtgtttcgtccttgaatgaaaagctggattccttgcaatatgcaaggcactctgactgtcacaatac |
48697960 |
T |
|
| Q |
508 |
acagtaatttgttcctgtttgtgcccgagt |
537 |
Q |
| |
|
||||||||||||||||| |||||||||||| |
|
|
| T |
48697961 |
acagtaatttgttcctgcttgtgcccgagt |
48697990 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 290; E-Value: 1e-162
Query Start/End: Original strand, 208 - 537
Target Start/End: Original strand, 30946023 - 30946352
Alignment:
| Q |
208 |
tgttcacaatctcccacttaaagtcacttttgtgagcttccaaaatctctctaccttgccaactccagttgctacgtttccaataggccatacgaggatc |
307 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| || ||| | ||||||||||||||||||||||||||||||||| |
|
|
| T |
30946023 |
tgttcacagtctcccacttaaagtcacttttgtgagctctcaaaatctctctaccttaccgacttcggttgctacgtttccaataggccatacgaggatc |
30946122 |
T |
|
| Q |
308 |
gacaccatacaaacttatcagtgttgatcggctttgtcattacatctgctagattatcattggtgtgaatcttctgcatgtccacacttccctcctctac |
407 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30946123 |
gacaccatacaaacttatcagcgttgatcggctttgtcattacatctgctagattatcattggtgtgaatcttctgcatgtccacacttccctcctctac |
30946222 |
T |
|
| Q |
408 |
tacttcgcgaacaaaatgatattgaacgcctatgtgcttcgtccttgaatgaaaagctggattccttgcaatgtgcaaggcactctgactgtcacaatac |
507 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30946223 |
tacttcgcgaacaaaatgatattgaacgcctatgtgtttcgtccttgaatgaaaagctggattccttgcaatgtgcaaggcactctgactgtcacaatac |
30946322 |
T |
|
| Q |
508 |
acagtaatttgttcctgtttgtgcccgagt |
537 |
Q |
| |
|
||||||||||||||||| |||||||||||| |
|
|
| T |
30946323 |
acagtaatttgttcctgcttgtgcccgagt |
30946352 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 198 - 537
Target Start/End: Complemental strand, 42270390 - 42270051
Alignment:
| Q |
198 |
tgttcacacatgttcacaatctcccacttaaagtcacttttgtgagcttccaaaatctctctaccttgccaactccagttgctacgtttccaataggcca |
297 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| | |||| |||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
42270390 |
tgttcacacatgttcacaatctcccacttaaagtcacttttgtgagtattcaaagtctctctaccttgccaactctagttgctacgtttccaataggcca |
42270291 |
T |
|
| Q |
298 |
tacgaggatcgacaccatacaaacttatcagtgttgatcggctttgtcattacatctgctagattatcattggtgtgaatcttctgcatgtccacacttc |
397 |
Q |
| |
|
||| | ||||||||||||| |||||| ||||||||||||| |||||||||| |||||||||| |||||||| ||||||||||||||||| ||||| |||| |
|
|
| T |
42270290 |
tacaaagatcgacaccatataaacttgtcagtgttgatcgactttgtcattgcatctgctaggttatcattagtgtgaatcttctgcatatccacgcttc |
42270191 |
T |
|
| Q |
398 |
cctcctctactacttcgcgaacaaaatgatattgaacgcctatgtgcttcgtccttgaatgaaaagctggattccttgcaatgtgcaaggcactctgact |
497 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
42270190 |
cttcctctactacttcgcgaacaaaatgatattgaacgcctatgtgtttcgtccttgaatgaaaagctggattccttgcaatatgcaaggcactctgact |
42270091 |
T |
|
| Q |
498 |
gtcacaatacacagtaatttgttcctgtttgtgcccgagt |
537 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
42270090 |
gtcacaatacacagtaatttgttcctgcttgtgcccgagt |
42270051 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 301 - 537
Target Start/End: Complemental strand, 2003267 - 2003031
Alignment:
| Q |
301 |
gaggatcgacaccatacaaacttatcagtgttgatcggctttgtcattacatctgctagattatcattggtgtgaatcttctgcatgtccacacttccct |
400 |
Q |
| |
|
||||||||||||||| ||| || ||| ||||| | ||||||||| |||||||||| ||| || ||||||||||| |||||||| || ||||| || | |
|
|
| T |
2003267 |
gaggatcgacaccatgtaaatttgtcaacattgattgactttgtcataacatctgctaaattgtctttggtgtgaattttctgcatatcaacactccctt |
2003168 |
T |
|
| Q |
401 |
cctctactacttcgcgaacaaaatgatattgaacgcctatgtgcttcgtccttgaatgaaaagctggattccttgcaatgtgcaaggcactctgactgtc |
500 |
Q |
| |
|
|||||| ||||| ||||||||||| |||||||| ||||||| || || || |||||||| ||||||||||||||| ||||| ||||||| |||||| |
|
|
| T |
2003167 |
tctctaccacttctcgaacaaaatggtattgaacatctatgtgttttgttctcgaatgaaagaatggattccttgcaatatgcaatgcactctaactgtc |
2003068 |
T |
|
| Q |
501 |
acaatacacagtaatttgttcctgtttgtgcccgagt |
537 |
Q |
| |
|
|||||||||| |||||||| || ||||||||||| |
|
|
| T |
2003067 |
acaatacacaacaatttgttgttgactgtgcccgagt |
2003031 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 268; Significance: 1e-149; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 198 - 537
Target Start/End: Original strand, 9439921 - 9440260
Alignment:
| Q |
198 |
tgttcacacatgttcacaatctcccacttaaagtcacttttgtgagcttccaaaatctctctaccttgccaactccagttgctacgtttccaataggcca |
297 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| | |||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9439921 |
tgttcacacatgttcacaatctcccacttaaagtcacttttgtgagtattcaaagtctctctaccttgccaactccagttgctacgtttccaataggcca |
9440020 |
T |
|
| Q |
298 |
tacgaggatcgacaccatacaaacttatcagtgttgatcggctttgtcattacatctgctagattatcattggtgtgaatcttctgcatgtccacacttc |
397 |
Q |
| |
|
||||| ||||||||||||| |||||| ||||||||||||| |||||||||| |||||||||| |||||||| ||||||||||||||||| ||||| |||| |
|
|
| T |
9440021 |
tacgaagatcgacaccatataaacttgtcagtgttgatcgactttgtcattgcatctgctaggttatcattagtgtgaatcttctgcatatccacgcttc |
9440120 |
T |
|
| Q |
398 |
cctcctctactacttcgcgaacaaaatgatattgaacgcctatgtgcttcgtccttgaatgaaaagctggattccttgcaatgtgcaaggcactctgact |
497 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
9440121 |
cttcctctactacttcgcgaacaaaatgatattgaatgcctatgtgtttcgtccttgaatgaaaagctggattccttgcaatatgcaaggcactctgact |
9440220 |
T |
|
| Q |
498 |
gtcacaatacacagtaatttgttcctgtttgtgcccgagt |
537 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
9440221 |
gtcacaatacacagtaatttgttcctgcttgtgcccgagt |
9440260 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 301 - 520
Target Start/End: Original strand, 24594424 - 24594643
Alignment:
| Q |
301 |
gaggatcgacaccatacaaacttatcagtgttgatcggctttgtcattacatctgctagattatcattggtgtgaatcttctgcatgtccacacttccct |
400 |
Q |
| |
|
||||||| ||||||| ||| || |||| ||||| | ||||||||| |||||||||| ||| || ||||||||||| |||||||| || ||||| || | |
|
|
| T |
24594424 |
gaggatctacaccatgtaaatttgtcagcattgattgactttgtcataacatctgctaaattgtctttggtgtgaattttctgcatatcaacactccctt |
24594523 |
T |
|
| Q |
401 |
cctctactacttcgcgaacaaaatgatattgaacgcctatgtgcttcgtccttgaatgaaaagctggattccttgcaatgtgcaaggcactctgactgtc |
500 |
Q |
| |
|
|||||| ||||| ||||||||||| |||||||| |||||||| || || || |||||||| |||||||||||||||||||||| |||||||||||||| |
|
|
| T |
24594524 |
tctctaccacttctcgaacaaaatggtattgaacacctatgtgttttgttctcgaatgaaagactggattccttgcaatgtgcaatgcactctgactgtc |
24594623 |
T |
|
| Q |
501 |
acaatacacagtaatttgtt |
520 |
Q |
| |
|
|||||||||| |||||||| |
|
|
| T |
24594624 |
acaatacacaacaatttgtt |
24594643 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 205 - 242
Target Start/End: Original strand, 24594367 - 24594404
Alignment:
| Q |
205 |
acatgttcacaatctcccacttaaagtcacttttgtga |
242 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
24594367 |
acatcttcacaatctcccacttaaagtcacttttgtga |
24594404 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 267; Significance: 1e-149; HSPs: 8)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 195 - 537
Target Start/End: Original strand, 26976720 - 26977062
Alignment:
| Q |
195 |
atgtgttcacacatgttcacaatctcccacttaaagtcacttttgtgagcttccaaaatctctctaccttgccaactccagttgctacgtttccaatagg |
294 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| | |||| | ||||||| ||||||||| |||||||||||||||||||||| |
|
|
| T |
26976720 |
atgtgttcacacatgttcacaatctcccacttaaagtcacttttgtgagcattcaaagtttctctactttgccaacttcagttgctacgtttccaatagg |
26976819 |
T |
|
| Q |
295 |
ccatacgaggatcgacaccatacaaacttatcagtgttgatcggctttgtcattacatctgctagattatcattggtgtgaatcttctgcatgtccacac |
394 |
Q |
| |
|
|||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| ||||| ||||| | |
|
|
| T |
26976820 |
ccatacgaggatcgacaccatataaacttgtcagtgttgatcggctttgtcattacatctgctaggttatcattagtgtgaatcttttgcatatccacgc |
26976919 |
T |
|
| Q |
395 |
ttccctcctctactacttcgcgaacaaaatgatattgaacgcctatgtgcttcgtccttgaatgaaaagctggattccttgcaatgtgcaaggcactctg |
494 |
Q |
| |
|
|||||||||| |||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26976920 |
ttccctcctccactacttctcgaacaaaatgatattgaacacctatgtgcttcgtccttgaatgaaaagctggattccttgcaatgtgcaaggcactctg |
26977019 |
T |
|
| Q |
495 |
actgtcacaatacacagtaatttgttcctgtttgtgcccgagt |
537 |
Q |
| |
|
||||||||||||||||||||||| ||||| |||||||||||| |
|
|
| T |
26977020 |
actgtcacaatacacagtaattttctcctgcttgtgcccgagt |
26977062 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 260; E-Value: 1e-144
Query Start/End: Original strand, 198 - 537
Target Start/End: Original strand, 27874539 - 27874878
Alignment:
| Q |
198 |
tgttcacacatgttcacaatctcccacttaaagtcacttttgtgagcttccaaaatctctctaccttgccaactccagttgctacgtttccaataggcca |
297 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| | |||| |||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
27874539 |
tgttcacacatgttcacaatctcccacttaaagtcacttttgtgagtattcaaagtctctctaccttgccaactctagttgctacgtttccaataggcca |
27874638 |
T |
|
| Q |
298 |
tacgaggatcgacaccatacaaacttatcagtgttgatcggctttgtcattacatctgctagattatcattggtgtgaatcttctgcatgtccacacttc |
397 |
Q |
| |
|
||| | ||||||||||||| |||||| ||||||||||||| |||||||||| |||||||||| |||||||| ||||||||||||||||| ||||| |||| |
|
|
| T |
27874639 |
tacaaagatcgacaccatataaacttgtcagtgttgatcgactttgtcattgcatctgctaggttatcattagtgtgaatcttctgcatatccacgcttc |
27874738 |
T |
|
| Q |
398 |
cctcctctactacttcgcgaacaaaatgatattgaacgcctatgtgcttcgtccttgaatgaaaagctggattccttgcaatgtgcaaggcactctgact |
497 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
27874739 |
cttcctctactacttcgcgaacaaaatgatattgaatgcctatgtgtttcgtccttgaatgaaaagctggattccttgcaatatgcaaggcactctgact |
27874838 |
T |
|
| Q |
498 |
gtcacaatacacagtaatttgttcctgtttgtgcccgagt |
537 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
27874839 |
gtcacaatacacagtaatttgttcctgcttgtgcccgagt |
27874878 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 188; E-Value: 1e-101
Query Start/End: Original strand, 210 - 497
Target Start/End: Complemental strand, 18967543 - 18967256
Alignment:
| Q |
210 |
ttcacaatctcccacttaaagtcacttttgtgagcttccaaaatctctctaccttgccaactccagttgctacgtttccaataggccatacgaggatcga |
309 |
Q |
| |
|
||||||||||||||||||||| ||||||| |||||||||||||||||||||||| || | || ||||||| |||| |||||||||||| ||||||||| |
|
|
| T |
18967543 |
ttcacaatctcccacttaaagctacttttgcgagcttccaaaatctctctaccttacccattcatgttgctatgttttcaataggccataggaggatcga |
18967444 |
T |
|
| Q |
310 |
caccatacaaacttatcagtgttgatcggctttgtcattacatctgctagattatcattggtgtgaatcttctgcatgtccacacttccctcctctacta |
409 |
Q |
| |
|
||||||| |||||| |||| ||||| || |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
18967443 |
caccatataaacttgtcagcattgattggttttgtcatcacatctgctagattatcattggtgtgaatcttctgcatgtccacacttccctcctccacta |
18967344 |
T |
|
| Q |
410 |
cttcgcgaacaaaatgatattgaacgcctatgtgcttcgtccttgaatgaaaagctggattccttgcaatgtgcaaggcactctgact |
497 |
Q |
| |
|
||| |||||||||||||||| |||||||||||| ||||||||||||||||||| |||||||||||||||||| |||||||||||||| |
|
|
| T |
18967343 |
cttgtcgaacaaaatgatatttaacgcctatgtgtttcgtccttgaatgaaaagttggattccttgcaatgtgtaaggcactctgact |
18967256 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 301 - 520
Target Start/End: Original strand, 1472398 - 1472617
Alignment:
| Q |
301 |
gaggatcgacaccatacaaacttatcagtgttgatcggctttgtcattacatctgctagattatcattggtgtgaatcttctgcatgtccacacttccct |
400 |
Q |
| |
|
||||||||||||||| ||| || |||| ||||| | ||||||||| |||||||||| ||| || ||||||||||| |||||||| || ||||| | | |
|
|
| T |
1472398 |
gaggatcgacaccatgtaaatttgtcagcattgattgactttgtcataacatctgctaaattgtctttggtgtgaattttctgcatatcaacactccttt |
1472497 |
T |
|
| Q |
401 |
cctctactacttcgcgaacaaaatgatattgaacgcctatgtgcttcgtccttgaatgaaaagctggattccttgcaatgtgcaaggcactctgactgtc |
500 |
Q |
| |
|
|||||||||||| ||||||||||| |||||||| ||||||| || || || |||||||| ||||||| | |||||||||||| |||||||||||||| |
|
|
| T |
1472498 |
tctctactacttctcgaacaaaatggtattgaacatctatgtgttttgttctcgaatgaaagactggattacatgcaatgtgcaatgcactctgactgtc |
1472597 |
T |
|
| Q |
501 |
acaatacacagtaatttgtt |
520 |
Q |
| |
|
|||||||||| |||||||| |
|
|
| T |
1472598 |
acaatacacaacaatttgtt |
1472617 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 341 - 501
Target Start/End: Complemental strand, 21965725 - 21965565
Alignment:
| Q |
341 |
ttgtcattacatctgctagattatcattggtgtgaatcttctgcatgtccacacttccctcctctactacttcgcgaacaaaatgatattgaacgcctat |
440 |
Q |
| |
|
|||||||||||||| |||| ||||||||||||||| |||||||| ||||| |||| |||| |||||||| | |||||||| ||||||||||||| | |
|
|
| T |
21965725 |
ttgtcattacatcttctaggttatcattggtgtgagcattctgcatatccacccttcattccttcactacttctcaaacaaaataatattgaacgcctgt |
21965626 |
T |
|
| Q |
441 |
gtgcttcgtccttgaatgaaaagctggattccttgcaatgtgcaaggcactctgactgtca |
501 |
Q |
| |
|
||||| ||| ||||||||||||| ||||||||||| ||||||||||| ||||||||||||| |
|
|
| T |
21965625 |
gtgctccgttcttgaatgaaaagttggattccttgaaatgtgcaaggtactctgactgtca |
21965565 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 207 - 323
Target Start/End: Complemental strand, 21966604 - 21966493
Alignment:
| Q |
207 |
atgttcacaatctcccacttaaagtcacttttgtgagcttccaaaatctctctaccttgccaactcc-agttgctacgtttccaataggccatacgagga |
305 |
Q |
| |
|
||||||||||| ||||||||| || ||||||||| || || |||||||||||||||||||||||||| |||||||||||| | |||||||||| |
|
|
| T |
21966604 |
atgttcacaatatcccacttacagccacttttgtaagatttcaaaatctctctaccttgccaactccttattgctacgtttcaa------catacgagga |
21966511 |
T |
|
| Q |
306 |
tcgacaccatacaaactt |
323 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
21966510 |
tcgacaccatacaaactt |
21966493 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 207 - 267
Target Start/End: Complemental strand, 30968629 - 30968569
Alignment:
| Q |
207 |
atgttcacaatctcccacttaaagtcacttttgtgagcttccaaaatctctctaccttgcc |
267 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
30968629 |
atgttcacaatctcccacttaaagtcacttttgtgagcactcaaaatctctctaccttgcc |
30968569 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 205 - 242
Target Start/End: Original strand, 1472341 - 1472378
Alignment:
| Q |
205 |
acatgttcacaatctcccacttaaagtcacttttgtga |
242 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
1472341 |
acatcttcacaatctcccacttaaagtcacttttgtga |
1472378 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 259; Significance: 1e-144; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 195 - 537
Target Start/End: Original strand, 5819102 - 5819444
Alignment:
| Q |
195 |
atgtgttcacacatgttcacaatctcccacttaaagtcacttttgtgagcttccaaaatctctctaccttgccaactccagttgctacgtttccaatagg |
294 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||| | |||| | ||||||| ||||||||| |||||||||||||||||||||| |
|
|
| T |
5819102 |
atgtgttcacacatgttcacaatctcccacttaaagttacttttgtgagcattcaaagtttctctactttgccaacttcagttgctacgtttccaatagg |
5819201 |
T |
|
| Q |
295 |
ccatacgaggatcgacaccatacaaacttatcagtgttgatcggctttgtcattacatctgctagattatcattggtgtgaatcttctgcatgtccacac |
394 |
Q |
| |
|
|||||||||||||||| ||||| |||||| ||||||||||||||||||||||||||| ||||||| |||||||| ||||||||||| ||||| ||||| | |
|
|
| T |
5819202 |
ccatacgaggatcgacgccatataaacttgtcagtgttgatcggctttgtcattacaactgctaggttatcattagtgtgaatcttttgcatatccacgc |
5819301 |
T |
|
| Q |
395 |
ttccctcctctactacttcgcgaacaaaatgatattgaacgcctatgtgcttcgtccttgaatgaaaagctggattccttgcaatgtgcaaggcactctg |
494 |
Q |
| |
|
|||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5819302 |
ttccctcctccactacttctcgaacaaaatgatattgaacgcctatgtgcttcgtccttgaatgaaaagctggattccttgcaatgtgcaaggcactctg |
5819401 |
T |
|
| Q |
495 |
actgtcacaatacacagtaatttgttcctgtttgtgcccgagt |
537 |
Q |
| |
|
||||||||||||||||||||||| ||||| |||||||||||| |
|
|
| T |
5819402 |
actgtcacaatacacagtaattttctcctgcttgtgcccgagt |
5819444 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 198 - 537
Target Start/End: Complemental strand, 54545632 - 54545293
Alignment:
| Q |
198 |
tgttcacacatgttcacaatctcccacttaaagtcacttttgtgagcttccaaaatctctctaccttgccaactccagttgctacgtttccaataggcca |
297 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| | |||| |||||||||||||||||| ||||||||| ||||||||||||||| |
|
|
| T |
54545632 |
tgttcacacatgttcacaatctcccacttaaagtcacttttgtgagcattcaaagcctctctaccttgccaacttcagttgctatgtttccaataggcca |
54545533 |
T |
|
| Q |
298 |
tacgaggatcgacaccatacaaacttatcagtgttgatcggctttgtcattacatctgctagattatcattggtgtgaatcttctgcatgtccacacttc |
397 |
Q |
| |
|
||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||| ||||| |||| |
|
|
| T |
54545532 |
tacgaggatcgacaccatataaacttgtcagtgttgatcggctttgtcattacatctgctaggttatcattagtgtgaatcttctgcatatccacgcttc |
54545433 |
T |
|
| Q |
398 |
cctcctctactacttcgcgaacaaaatgatattgaacgcctatgtgcttcgtccttgaatgaaaagctggattccttgcaatgtgcaaggcactctgact |
497 |
Q |
| |
|
| |||||||||||||| |||| |||||||||||||||||||||||| ||||||||||||||||||| || |||||||||||||||||| ||||||||||| |
|
|
| T |
54545432 |
cttcctctactacttctcgaataaaatgatattgaacgcctatgtgtttcgtccttgaatgaaaagttgaattccttgcaatgtgcaatgcactctgact |
54545333 |
T |
|
| Q |
498 |
gtcacaatacacagtaatttgttcctgtttgtgcccgagt |
537 |
Q |
| |
|
||||||||||||| ||||||||||||| |||||||||||| |
|
|
| T |
54545332 |
gtcacaatacacaataatttgttcctgcttgtgcccgagt |
54545293 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 301 - 537
Target Start/End: Complemental strand, 42589332 - 42589096
Alignment:
| Q |
301 |
gaggatcgacaccatacaaacttatcagtgttgatcggctttgtcattacatctgctagattatcattggtgtgaatcttctgcatgtccacacttccct |
400 |
Q |
| |
|
||||||| ||||||| ||| || |||| ||||| | ||||||||| | |||||||| ||| || ||||||||||| |||||||| || ||||| || | |
|
|
| T |
42589332 |
gaggatctacaccatgtaaatttgtcagcattgattgactttgtcataatatctgctaaattgtctttggtgtgaattttctgcatatcaacactccctt |
42589233 |
T |
|
| Q |
401 |
cctctactacttcgcgaacaaaatgatattgaacgcctatgtgcttcgtccttgaatgaaaagctggattccttgcaatgtgcaaggcactctgactgtc |
500 |
Q |
| |
|
|||||| ||||| ||||||||||| |||||||| |||||||| || || || |||||||| |||||||||||||||||||||| ||||| |||||||| |
|
|
| T |
42589232 |
tctctaccacttctcgaacaaaatggtattgaacacctatgtgttttgttctcgaatgaaagactggattccttgcaatgtgcaatgcactatgactgtc |
42589133 |
T |
|
| Q |
501 |
acaatacacagtaatttgttcctgtttgtgcccgagt |
537 |
Q |
| |
|
|||||||||| |||||||| || ||||||||||| |
|
|
| T |
42589132 |
acaatacacaacaatttgttgttgactgtgcccgagt |
42589096 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 205 - 242
Target Start/End: Complemental strand, 42589389 - 42589352
Alignment:
| Q |
205 |
acatgttcacaatctcccacttaaagtcacttttgtga |
242 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
42589389 |
acatcttcacaatctcccacttaaagtcacttttgtga |
42589352 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 252; Significance: 1e-140; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 206 - 537
Target Start/End: Complemental strand, 829958 - 829627
Alignment:
| Q |
206 |
catgttcacaatctcccacttaaagtcacttttgtgagcttccaaaatctctctaccttgccaactccagttgctacgtttccaataggccatacgagga |
305 |
Q |
| |
|
|||||||||||| |||||||||||| |||||||||||| | |||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
829958 |
catgttcacaatatcccacttaaagctacttttgtgagcattcaaagtctctctaccttgccaactccagttgctatgtttccaataggccatacgagga |
829859 |
T |
|
| Q |
306 |
tcgacaccatacaaacttatcagtgttgatcggctttgtcattacatctgctagattatcattggtgtgaatcttctgcatgtccacacttccctcctct |
405 |
Q |
| |
|
||||||||||| |||||| ||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||| ||| ||||| ||||| |||||| |
|
|
| T |
829858 |
tcgacaccatataaacttgtcagtgttgatcggctttgtcattacatctgctaggttatcattagtgtgaatcttctacatatccacgcttccttcctct |
829759 |
T |
|
| Q |
406 |
actacttcgcgaacaaaatgatattgaacgcctatgtgcttcgtccttgaatgaaaagctggattccttgcaatgtgcaaggcactctgactgtcacaat |
505 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
829758 |
actacttctcgaacaaaatgatattgaacgcctatgtgtttcgtccttgaatgaaaagctggattccttgcaatgtgcaaggcactctgactgtcacaat |
829659 |
T |
|
| Q |
506 |
acacagtaatttgttcctgtttgtgcccgagt |
537 |
Q |
| |
|
|||||||||||| ||||| |||||||||||| |
|
|
| T |
829658 |
acacagtaattttctcctgcttgtgcccgagt |
829627 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 138; E-Value: 7e-72
Query Start/End: Original strand, 206 - 538
Target Start/End: Complemental strand, 28715550 - 28715230
Alignment:
| Q |
206 |
catgttcacaatctcccacttaaagtcacttttgtgagcttccaaaatctctctaccttgccaactccagttgctacgtttccaataggccatacgagga |
305 |
Q |
| |
|
||||||||||||||||||||||||| || ||| | || | |||||||||||||||| ||||||| | |||||||| ||| |||||||||||| ||||| |
|
|
| T |
28715550 |
catgttcacaatctcccacttaaagctacattttttagaattcaaaatctctctacctcgccaacttccgttgctacattttcaataggccatatgagga |
28715451 |
T |
|
| Q |
306 |
tcgacaccatacaaacttatcagtgttgatcggctttgtcattacatctgctagattatcattggtgtgaatcttctgcatgtccacacttccctcctct |
405 |
Q |
| |
|
||||||| ||| |||||| |||| ||||||| ||||||||||||||||||||| |||||||||||||||||||| ||||| | ||||| ||||||||| |
|
|
| T |
28715450 |
tcgacactatagaaacttgtcagcattgatcgactttgtcattacatctgctaggttatcattggtgtgaatcttatgcatattcacac-tccctcctcc |
28715352 |
T |
|
| Q |
406 |
actacttcgcgaacaaaatgatattgaacgcctatgtgcttcgtccttgaatgaaaagctggattccttgcaatgtgcaaggcactctgactgtcacaat |
505 |
Q |
| |
|
|| ||| | |||||||||||||||||||| |||||||||||| |||||||| |||||| |||||| ||||||||||| | ||| ||||||| |
|
|
| T |
28715351 |
ac-actactcgaacaaaatgatattgaacacctatgtgcttcatccttgaacgaaaagttggatt----------tgcaaggcactataactatcacaat |
28715263 |
T |
|
| Q |
506 |
acacagtaatttgttcctgtttgtgcccgagta |
538 |
Q |
| |
|
||||||||||||| ||||| ||||||||||||| |
|
|
| T |
28715262 |
acacagtaatttgctcctgcttgtgcccgagta |
28715230 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 205 - 533
Target Start/End: Original strand, 13840763 - 13841093
Alignment:
| Q |
205 |
acatgttcacaatctcccacttaaagtcacttttgtgagcttccaaaatctctctaccttgccaactccagttgctacgtttccaataggccatacg--- |
301 |
Q |
| |
|
||||||| |||||||| |||||||| ||||||||||||||| ||||| ||||| |||||||||||| ||||||| |||||||||||| ||||| |
|
|
| T |
13840763 |
acatgtttacaatctctcacttaaatctacttttgtgagcttctaaaatttctctgccttgccaactcttgttgctatgtttccaataggtcatacttcc |
13840862 |
T |
|
| Q |
302 |
-aggatcgacaccatacaaacttatcagtgttgatcggctttgtcattacatctgctagattatcattggtgtgaatcttctgcatgtccacacttccct |
400 |
Q |
| |
|
||||||||| |||||||||||||| || |||||||| ||||||| ||||| | ||| |||||| | || ||||||||||||| |||| |||||| | |
|
|
| T |
13840863 |
caggatcgacgccatacaaacttattagcattgatcggttttgtcaccacatccgttaggttatcacttgtctgaatcttctgcacatccatacttcctt |
13840962 |
T |
|
| Q |
401 |
cctctactacttcgcgaacaaaatgatattgaacgcctatgtgcttcgtccttgaatgaaaagctggattccttgcaatgtgcaaggcactctgactgtc |
500 |
Q |
| |
|
| || ||||||| ||||||||||||||||||| | |||||| || ||||||||||||||| || ||| ||||||||||| |||||| ||| | |||| |
|
|
| T |
13840963 |
cgtcgactactt-ttgaacaaaatgatattgaacacttatgtgttttgtccttgaatgaaaa-atgaatttcttgcaatgtgaaaggcattctaattgtc |
13841060 |
T |
|
| Q |
501 |
acaatacacagtaatttgttcctgtttgtgccc |
533 |
Q |
| |
|
|||||||| ||||||||| | ||||||||||| |
|
|
| T |
13841061 |
acaatacatagtaatttgatgttgtttgtgccc |
13841093 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0074 (Bit Score: 228; Significance: 1e-125; HSPs: 1)
Name: scaffold0074
Description:
Target: scaffold0074; HSP #1
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 210 - 537
Target Start/End: Original strand, 27877 - 28204
Alignment:
| Q |
210 |
ttcacaatctcccacttaaagtcacttttgtgagcttccaaaatctctctaccttgccaactccagttgctacgtttccaataggccatacgaggatcga |
309 |
Q |
| |
|
||||||||||||||||||||| ||||||| ||||||||||||||||| ||||||||| | || ||||||||||||||||||||||||| ||||||||| |
|
|
| T |
27877 |
ttcacaatctcccacttaaagctacttttgcgagcttccaaaatctctttaccttgcccattcatgttgctacgtttccaataggccataggaggatcga |
27976 |
T |
|
| Q |
310 |
caccatacaaacttatcagtgttgatcggctttgtcattacatctgctagattatcattggtgtgaatcttctgcatgtccacacttccctcctctacta |
409 |
Q |
| |
|
||||||| |||||| |||| ||||| || ||||| || |||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
27977 |
caccatataaacttgtcagcattgattggttttgtaatcacatctactagattatcattggtgtgaatcttctgcatgtccacacttccctcctccacta |
28076 |
T |
|
| Q |
410 |
cttcgcgaacaaaatgatattgaacgcctatgtgcttcgtccttgaatgaaaagctggattccttgcaatgtgcaaggcactctgactgtcacaatacac |
509 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28077 |
cttctcgaacaaaatgatattgaacgcctatgtgtttcgtccttgaatgaaaagctggattccttgcaatgtgcaaggcactctgactgtcacaatacac |
28176 |
T |
|
| Q |
510 |
agtaatttgttcctgtttgtgcccgagt |
537 |
Q |
| |
|
|||||||| ||||| |||||| ||||| |
|
|
| T |
28177 |
agtaatttaatcctgcttgtgcacgagt |
28204 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 157; Significance: 3e-83; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 157; E-Value: 3e-83
Query Start/End: Original strand, 210 - 537
Target Start/End: Original strand, 2323956 - 2324276
Alignment:
| Q |
210 |
ttcacaatctcccacttaaagtcacttttgtgagcttccaaaatctctctaccttgccaactccagttgctacgtttccaataggccatacgaggatcga |
309 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| | || ||||||||||||||||||| |||||||| |||||| |
|
|
| T |
2323956 |
ttcacaatctcccacttaaagccacttttgtgagcttccaaaatctctctaccttgcccattcatgttgctacgtttccaatagtccatacgatgatcga |
2324055 |
T |
|
| Q |
310 |
caccatacaaacttatcagtgttgatcggctttgtcattacatctgctagattatcattggtgtgaatcttctgcatgtccacacttccctcctctacta |
409 |
Q |
| |
|
||||||| |||||| || ||||| ||||||||||| ||||||||||| ||||||||||||| ||||||||||| |||||||||||||||| ||||| |
|
|
| T |
2324056 |
caccatataaacttggtagcattgattggctttgtcatcacatctgctagggtatcattggtgtggatcttctgcatatccacacttccctcctttacta |
2324155 |
T |
|
| Q |
410 |
cttcgcgaacaaaatgatattgaacgcctatgtgcttcgtccttgaatgaaaagctggattccttgcaatgtgcaaggcactctgactgtcacaatacac |
509 |
Q |
| |
|
|||| |||||||||||||| |||||| | |||| ||| ||| |||||||||||| ||||||||||||||||| || ||||||| ||||||||| |
|
|
| T |
2324156 |
cttctcgaacaaaatgata-tgaacgtcaatgttctttgtctttgaatgaaaagatggattccttgcaatgtcca------cctgactgccacaatacaa |
2324248 |
T |
|
| Q |
510 |
agtaatttgttcctgtttgtgcccgagt |
537 |
Q |
| |
|
||| |||| ||||| |||||||||||| |
|
|
| T |
2324249 |
agtgattttctcctgcttgtgcccgagt |
2324276 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 301 - 520
Target Start/End: Original strand, 7504696 - 7504915
Alignment:
| Q |
301 |
gaggatcgacaccatacaaacttatcagtgttgatcggctttgtcattacatctgctagattatcattggtgtgaatcttctgcatgtccacacttccct |
400 |
Q |
| |
|
||||||||||||||| ||| || ||||| ||||| | ||||||||| |||||||||| ||| || ||||||||||| || ||||| || ||||| || | |
|
|
| T |
7504696 |
gaggatcgacaccatgtaaatttgtcagtattgattgactttgtcataacatctgctaaattgtctttggtgtgaattttttgcatatcaacactccctt |
7504795 |
T |
|
| Q |
401 |
cctctactacttcgcgaacaaaatgatattgaacgcctatgtgcttcgtccttgaatgaaaagctggattccttgcaatgtgcaaggcactctgactgtc |
500 |
Q |
| |
|
|||||| ||||| ||||||||||| |||||||| ||||||| || || || |||||||| |||||||||||||||||||||| |||||||||||||| |
|
|
| T |
7504796 |
tctctaccacttctcgaacaaaatggtattgaacatctatgtgttttgttctcgaatgaaagactggattccttgcaatgtgcaatgcactctgactgtc |
7504895 |
T |
|
| Q |
501 |
acaatacacagtaatttgtt |
520 |
Q |
| |
|
|||||||||| |||||||| |
|
|
| T |
7504896 |
acaatacacaacaatttgtt |
7504915 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 203 - 520
Target Start/End: Complemental strand, 22510398 - 22510082
Alignment:
| Q |
203 |
acacatgttcacaatctcccacttaaagtcacttttgtgagcttccaaaatctctctaccttgccaactccagttgctacgtttccaataggccatacga |
302 |
Q |
| |
|
|||||||||||| ||||| | |||||| | ||||| |||||| |||||| ||||||||||||||||||| ||| ||| |||| ||||||||| | |
|
|
| T |
22510398 |
acacatgttcactatctc--aattaaagctatttttgggagctttcaaaatatctctaccttgccaactcctgtttctatgttttgaataggccacagag |
22510301 |
T |
|
| Q |
303 |
ggatcgacaccatacaaacttatcagtgttgatcgg-ctttgtcattacatctgctagattatcattggtgtgaatcttctgcatgtccacacttccctc |
401 |
Q |
| |
|
|||| ||||||||| |||||||||| | ||||| | |||| |||| ||||||||| | ||||||| || ||||||||| |||| |||||| |||||| |
|
|
| T |
22510300 |
ggattgacaccatataaacttatcaatattgattagactttttcatcacatctgcttggttatcatcagtttgaatcttcggcatatccacatgtccctc |
22510201 |
T |
|
| Q |
402 |
ctctactacttcgcgaacaaaatgatattgaacgcctatgtgcttcgtccttgaatgaaaagctggattccttgcaatgtgcaaggcactctgactgtca |
501 |
Q |
| |
|
||| || ||| || |||||| |||||||||||| ||||| ||||| | |||| |||| |||||| |||| |||||||||| |||||||||| ||| |
|
|
| T |
22510200 |
ctccacaactaatacaaaaaaatggtattgaacgcctttgtgcatcgtcttggaatacaaagttggattgcttgaaatgtgcaagacactctgactatca |
22510101 |
T |
|
| Q |
502 |
caatacacagtaatttgtt |
520 |
Q |
| |
|
||||||| ||||||||||| |
|
|
| T |
22510100 |
caatacaaagtaatttgtt |
22510082 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 302 - 431
Target Start/End: Complemental strand, 37957162 - 37957033
Alignment:
| Q |
302 |
aggatcgacaccatacaaacttatcagtgttgatcggctttgtcattacatctgctagattatcattggtgtgaatcttctgcatgtccacacttccctc |
401 |
Q |
| |
|
|||||||||| |||| |||||||||| || || | ||||||||| ||| ||||||| ||| || ||||||||| ||||||||||||||||| || |
|
|
| T |
37957162 |
aggatcgacatcatataaacttatcaccattaattgactttgtcatcacacttgctagacaatctttattgtgaatctattgcatgtccacacttccttc |
37957063 |
T |
|
| Q |
402 |
ctctactacttcgcgaacaaaatgatattg |
431 |
Q |
| |
|
|||||||||||||| |||| |||||||||| |
|
|
| T |
37957062 |
ctctactacttcgcaaacataatgatattg |
37957033 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 205 - 242
Target Start/End: Original strand, 7504639 - 7504676
Alignment:
| Q |
205 |
acatgttcacaatctcccacttaaagtcacttttgtga |
242 |
Q |
| |
|
|||| |||||||||||||||||||||| |||||||||| |
|
|
| T |
7504639 |
acatcttcacaatctcccacttaaagttacttttgtga |
7504676 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 59; Significance: 1e-24; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 340 - 515
Target Start/End: Complemental strand, 34973826 - 34973649
Alignment:
| Q |
340 |
tttgtcattacatctgctagattatcattggtgtgaatcttctgcatgtccacacttccctcctctactacttcgcgaacaaaatgatattgaacgccta |
439 |
Q |
| |
|
|||||| | |||||| ||| |||||||| |||||||||||| |||| |||||||||| ||| || |||||||| | || ||||||||||| || ||||| |
|
|
| T |
34973826 |
tttgtcgtcacatcttttaggttatcattagtgtgaatcttcagcatatccacacttctctcttccactacttctcaaataaaatgatattaaatgccta |
34973727 |
T |
|
| Q |
440 |
tgtgcttcgtccttgaatg--aaaagctggattccttgcaatgtgcaaggcactctgactgtcacaatacacagtaat |
515 |
Q |
| |
|
| ||||||||||||||||| ||||| |||||| | | ||||||||||| |||| | ||| ||| |||||||| |||| |
|
|
| T |
34973726 |
tttgcttcgtccttgaatgaaaaaagttggatttcatacaatgtgcaagacactttaactttcataatacacaataat |
34973649 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 416 - 520
Target Start/End: Original strand, 41413628 - 41413732
Alignment:
| Q |
416 |
gaacaaaatgatattgaacgcctatgtgcttcgtccttgaatgaaaagctggattccttgcaatgtgcaaggcactctgactgtcacaatacacagtaat |
515 |
Q |
| |
|
|||||||||||||||||||||||| ||| | ||||||||||| || |||||||| ||||||||||||||| |||||| ||| |||||||| ||| |||| |
|
|
| T |
41413628 |
gaacaaaatgatattgaacgcctacatgccttgtccttgaatggaaggctggattacttgcaatgtgcaagacactctaactatcacaatatacaataat |
41413727 |
T |
|
| Q |
516 |
ttgtt |
520 |
Q |
| |
|
||||| |
|
|
| T |
41413728 |
ttgtt |
41413732 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 208 - 309
Target Start/End: Original strand, 41413422 - 41413523
Alignment:
| Q |
208 |
tgttcacaatctcccacttaaagtcacttttgtgagcttccaaaatctctctaccttgccaactccagttgctacgtttccaataggccatacgaggatc |
307 |
Q |
| |
|
|||||||||||| ||| ||||| ||||||| |||||| |||||| ||||| ||||||| | || ||||||| ||||| ||||| ||| ||||| ||| |
|
|
| T |
41413422 |
tgttcacaatcttccatttaaaactacttttgcgagctttcaaaatatctctgccttgcccattcttgttgctatgtttctaatagaccaaacgagaatc |
41413521 |
T |
|
| Q |
308 |
ga |
309 |
Q |
| |
|
|| |
|
|
| T |
41413522 |
ga |
41413523 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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