View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17287_low_83 (Length: 223)
Name: NF17287_low_83
Description: NF17287
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17287_low_83 |
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| [»] chr4 (4 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 196; Significance: 1e-107; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 28728148 - 28727928
Alignment:
| Q |
1 |
cttgtacccataacaaggatatcttggaaacgattgatcaagttcgttcataagctacaagaaaataaaagaagctagagaaactgtttacaattaagtt |
100 |
Q |
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| T |
28728148 |
cttgtacccataacaaggatatcttggaaacgattgatcaagttcgttcataagctacaagaaaataaacaaa--tagagaaactgtttacaattaagtt |
28728051 |
T |
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| Q |
101 |
catccacaccaaaaacaccctaagtactaatcaatattcttaaaataaaagaagcaagtaattagttctataaagtaagccatcttcaacagtaaataag |
200 |
Q |
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| T |
28728050 |
tatccacaccaaaaacaccctaagtactaatcaatattcttaaaataaaagaagcaagtaattaattctataaagtaagccatcttcaacagtaaataag |
28727951 |
T |
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| Q |
201 |
attaaattgttaaacaatcatcg |
223 |
Q |
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| T |
28727950 |
attaaattgttaaacaatcatcg |
28727928 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 96 - 223
Target Start/End: Complemental strand, 28734271 - 28734142
Alignment:
| Q |
96 |
aagttcatccacaccaaaaacaccctaagtactaatcaatattcttaaaataaaagaagcaagtaattagttctataaa--gtaagccatcttcaacagt |
193 |
Q |
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| T |
28734271 |
aagtttatccataccaaaaaaaccctaaataataatccattttcctaaaataaaagaagcaagtaattaattctataaaaagtaagccatcttcaacagt |
28734172 |
T |
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| Q |
194 |
aaataagattaaattgttaaacaatcatcg |
223 |
Q |
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| T |
28734171 |
aaataagattaaattgttaaacaatcatcg |
28734142 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 106
Target Start/End: Complemental strand, 28734396 - 28734294
Alignment:
| Q |
1 |
cttgtacccataacaaggat---atcttggaaacgattgatcaagttcgttcataagctacaagaaaataaaagaagctagagaaactgtttacaattaa |
97 |
Q |
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| T |
28734396 |
cttgtacccataacaaagatgctaacttggaaacgattgatcaaattcgttcataagcttcaagaaaataaa------cagagaaactgtttacaattaa |
28734303 |
T |
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| Q |
98 |
gttcatcca |
106 |
Q |
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||| ||||| |
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| T |
28734302 |
gtttatcca |
28734294 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 146 - 204
Target Start/End: Complemental strand, 28725518 - 28725460
Alignment:
| Q |
146 |
taaaagaagcaagtaattagttctataaagtaagccatcttcaacagtaaataagatta |
204 |
Q |
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| T |
28725518 |
taaaagaagcaagcaattaattctacaaagtaagccatcttcaccagaaaataagatta |
28725460 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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