View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17287_low_84 (Length: 222)

Name: NF17287_low_84
Description: NF17287
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17287_low_84
NF17287_low_84
[»] chr2 (17 HSPs)
chr2 (1-171)||(40126559-40126729)
chr2 (1-99)||(19898961-19899059)
chr2 (1-99)||(13686035-13686133)
chr2 (1-99)||(25414955-25415053)
chr2 (1-99)||(42263873-42263971)
chr2 (1-99)||(3810328-3810426)
chr2 (1-99)||(45093208-45093302)
chr2 (1-99)||(14941046-14941145)
chr2 (1-99)||(2752692-2752790)
chr2 (1-99)||(41464958-41465056)
chr2 (14-98)||(35676349-35676433)
chr2 (1-98)||(29689279-29689373)
chr2 (1-99)||(28429323-28429421)
chr2 (1-60)||(28716376-28716435)
chr2 (1-99)||(35323534-35323632)
chr2 (1-99)||(16058431-16058530)
chr2 (48-99)||(23454366-23454418)
[»] chr3 (16 HSPs)
chr3 (1-99)||(521823-521921)
chr3 (5-99)||(1561318-1561412)
chr3 (1-99)||(20912209-20912307)
chr3 (1-99)||(36517556-36517654)
chr3 (1-99)||(34624535-34624633)
chr3 (1-99)||(38176448-38176546)
chr3 (1-95)||(45166272-45166366)
chr3 (1-99)||(50612933-50613031)
chr3 (1-99)||(52546784-52546882)
chr3 (1-99)||(31788347-31788445)
chr3 (1-99)||(23643038-23643136)
chr3 (1-75)||(51297084-51297158)
chr3 (1-98)||(39145294-39145391)
chr3 (2-42)||(9496629-9496669)
chr3 (1-61)||(22650454-22650514)
chr3 (2-41)||(15461641-15461680)
[»] chr5 (19 HSPs)
chr5 (1-99)||(3456794-3456892)
chr5 (1-99)||(11739278-11739376)
chr5 (1-99)||(37093970-37094068)
chr5 (1-99)||(4391904-4392002)
chr5 (1-99)||(32891216-32891314)
chr5 (1-99)||(8692550-8692648)
chr5 (1-99)||(38614239-38614337)
chr5 (1-91)||(29223513-29223603)
chr5 (1-99)||(35672369-35672466)
chr5 (17-99)||(41326523-41326605)
chr5 (1-61)||(6614305-6614365)
chr5 (1-99)||(228065-228163)
chr5 (1-61)||(40925915-40925975)
chr5 (1-99)||(34286636-34286733)
chr5 (1-98)||(16516975-16517072)
chr5 (1-68)||(5481425-5481492)
chr5 (1-40)||(31644727-31644766)
chr5 (1-95)||(28434247-28434341)
chr5 (48-105)||(42148894-42148951)
[»] scaffold0002 (1 HSPs)
scaffold0002 (1-99)||(492708-492806)
[»] chr8 (15 HSPs)
chr8 (1-99)||(36473108-36473206)
chr8 (1-98)||(4851776-4851873)
chr8 (1-98)||(15561973-15562070)
chr8 (1-99)||(34392150-34392248)
chr8 (1-99)||(41322571-41322669)
chr8 (1-99)||(11643325-11643423)
chr8 (1-98)||(29314042-29314139)
chr8 (1-95)||(39112694-39112788)
chr8 (1-98)||(1005632-1005729)
chr8 (1-99)||(11653770-11653871)
chr8 (6-98)||(37919603-37919695)
chr8 (1-99)||(2001690-2001787)
chr8 (1-42)||(33888947-33888988)
chr8 (4-99)||(5548977-5549072)
chr8 (5-66)||(8551564-8551625)
[»] chr6 (6 HSPs)
chr6 (1-99)||(25935550-25935648)
chr6 (1-95)||(7646833-7646927)
chr6 (5-99)||(12607123-12607217)
chr6 (6-98)||(29487579-29487671)
chr6 (15-97)||(29636999-29637081)
chr6 (1-42)||(28898441-28898482)
[»] chr1 (16 HSPs)
chr1 (1-99)||(29095581-29095679)
chr1 (1-99)||(31032756-31032854)
chr1 (1-99)||(24135797-24135893)
chr1 (1-99)||(20808989-20809087)
chr1 (1-99)||(34475941-34476039)
chr1 (1-95)||(34807982-34808076)
chr1 (1-99)||(1270213-1270311)
chr1 (4-81)||(2958753-2958830)
chr1 (2-99)||(16254896-16254993)
chr1 (16-99)||(4194808-4194891)
chr1 (1-99)||(47550833-47550931)
chr1 (1-42)||(4624444-4624485)
chr1 (1-98)||(45010243-45010339)
chr1 (1-99)||(42480163-42480261)
chr1 (1-94)||(44714867-44714960)
chr1 (1-98)||(9098628-9098722)
[»] chr7 (7 HSPs)
chr7 (1-98)||(27425812-27425909)
chr7 (1-99)||(22326900-22326998)
chr7 (1-99)||(17611884-17611982)
chr7 (1-99)||(23992009-23992107)
chr7 (1-91)||(42195427-42195517)
chr7 (1-98)||(8307568-8307662)
chr7 (18-99)||(25686407-25686488)
[»] chr4 (13 HSPs)
chr4 (1-99)||(18375450-18375547)
chr4 (1-99)||(24683118-24683216)
chr4 (1-88)||(4512222-4512309)
chr4 (1-99)||(41633259-41633356)
chr4 (11-99)||(26179279-26179367)
chr4 (1-81)||(54358172-54358252)
chr4 (1-99)||(37674059-37674157)
chr4 (2-99)||(47839002-47839099)
chr4 (1-40)||(47281591-47281630)
chr4 (1-98)||(23348172-23348272)
chr4 (1-42)||(41878615-41878656)
chr4 (1-61)||(17847601-17847661)
chr4 (6-99)||(30508984-30509076)
[»] scaffold0071 (1 HSPs)
scaffold0071 (2-41)||(512-551)
[»] scaffold0132 (2 HSPs)
scaffold0132 (34-99)||(578-642)
scaffold0132 (34-99)||(8538-8602)


Alignment Details
Target: chr2 (Bit Score: 98; Significance: 2e-48; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 1 - 171
Target Start/End: Original strand, 40126559 - 40126729
Alignment:
Q  1 ttttaattgcatgatttatttgttcacttcctatttttcagctatatctccttgaattgtgacaaatagtacattatgattaactgctctttattcttgg 100  Q
    ||||||||| |||||||||||||||||||||||||||||| |||||||| ||| |||||||| ||||||| |||||||| | |||||||||||||||||     
T  40126559 ttttaattgtatgatttatttgttcacttcctatttttcaactatatcttcttaaattgtgataaatagtgcattatgaatgactgctctttattcttga 40126658  T
Q  101 tattannnnnnnaaagatgtaagattgctcgatttgagaaaaataaagaaggatcatagaagttgccatct 171  Q
    |||||       | ||| |||  ||||||||||||||||||||||||||||||||||||||||||||||||    
T  40126659 tattatttttttagagacgtagcattgctcgatttgagaaaaataaagaaggatcatagaagttgccatct 40126729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 19899059 - 19898961
Alignment:
Q  1 ttttaattgcatgatttatttgttcacttcctatttttcagctatatctccttgaattgtgacaaatagtacattatgattaactgctctttattcttg 99  Q
    ||||||||||||||||||||||||||||||||| |||||||| ||| ||||||||||||||||||||| | |||| |||||  ||||||||||||||||    
T  19899059 ttttaattgcatgatttatttgttcacttcctaattttcagcaatacctccttgaattgtgacaaataatgcattgtgattggctgctctttattcttg 19898961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 13686133 - 13686035
Alignment:
Q  1 ttttaattgcatgatttatttgttcacttcctatttttcagctatatctccttgaattgtgacaaatagtacattatgattaactgctctttattcttg 99  Q
    |||||||||||||||||||||||||||||||||||||||||| | | |||||||||||||| ||| |||| |||| |||||  ||||||||||||||||    
T  13686133 ttttaattgcatgatttatttgttcacttcctatttttcagccacacctccttgaattgtggcaagtagtgcattgtgattggctgctctttattcttg 13686035  T

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Target: chr2; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 25415053 - 25414955
Alignment:
Q  1 ttttaattgcatgatttatttgttcacttcctatttttcagctatatctccttgaattgtgacaaatagtacattatgattaactgctctttattcttg 99  Q
    ||||||||||||||||||||||||||||| || ||||||||| ||| |||||||||||||| |||||||| |||| ||||| |||| ||||||||||||    
T  25415053 ttttaattgcatgatttatttgttcactttctttttttcagccatacctccttgaattgtggcaaatagtgcattgtgattgactgttctttattcttg 25414955  T

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Target: chr2; HSP #5
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 42263971 - 42263873
Alignment:
Q  1 ttttaattgcatgatttatttgttcacttcctatttttcagctatatctccttgaattgtgacaaatagtacattatgattaactgctctttattcttg 99  Q
    |||||||||||| ||||||||||||| ||||||||||||||| | | |||||||||||||||||||| || |||| |||||  ||||||||||||||||    
T  42263971 ttttaattgcataatttatttgttcatttcctatttttcagccacacctccttgaattgtgacaaattgtgcattgtgattggctgctctttattcttg 42263873  T

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Target: chr2; HSP #6
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 3810328 - 3810426
Alignment:
Q  1 ttttaattgcatgatttatttgttcacttcctatttttcagctatatctccttgaattgtgacaaatagtacattatgattaactgctctttattcttg 99  Q
    |||||||||||||||||||||||||||||| ||||||||||  | | |||||||||||||| |||||||| |||| | |||  || |||||||||||||    
T  3810328 ttttaattgcatgatttatttgttcacttcttatttttcagtcacacctccttgaattgtggcaaatagtgcattgtaattggctactctttattcttg 3810426  T

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Target: chr2; HSP #7
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 45093208 - 45093302
Alignment:
Q  1 ttttaattgcatgatttatttgttcacttcctatttttcagctatatctccttgaattgtgacaaatagtacattatgattaactgctctttattcttg 99  Q
    |||||||||||||||||| ||||| ||||||||||||||||  ||| |||||||||||||| |||||||| |||| ||||    |||||||||||||||    
T  45093208 ttttaattgcatgatttaattgtttacttcctatttttcagtcatacctccttgaattgtggcaaatagtgcattgtgat----tgctctttattcttg 45093302  T

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Target: chr2; HSP #8
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 14941046 - 14941145
Alignment:
Q  1 ttttaattgcatgatttatttgttcacttcctatttttc-agctatatctccttgaattgtgacaaatagtacattatgattaactgctctttattcttg 99  Q
    |||||||| ||||||||||||||||||||| |||||||| ||  | | ||| |||||||||| |||||||| |||| ||||| |||||||||||||||||    
T  14941046 ttttaatttcatgatttatttgttcacttcttatttttcgagtcacacctctttgaattgtggcaaatagtgcattgtgattgactgctctttattcttg 14941145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 2752692 - 2752790
Alignment:
Q  1 ttttaattgcatgatttatttgttcacttcctatttttcagctatatctccttgaattgtgacaaatagtacattatgattaactgctctttattcttg 99  Q
    ||||||||| ||||||||||| |||||||| ||||||||||  | |||||||||||||||| |||||||| |||| |||||  ||||| ||| ||||||    
T  2752692 ttttaattgtatgatttatttattcacttcttatttttcagtcagatctccttgaattgtggcaaatagtgcattgtgattggctgctattttttcttg 2752790  T

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Target: chr2; HSP #10
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 41464958 - 41465056
Alignment:
Q  1 ttttaattgcatgatttatttgttcacttcctatttttcagctatatctccttgaattgtgacaaatagtacattatgattaactgctctttattcttg 99  Q
    ||||||||||||||||||||||||||||| |||||||||| | | | |||||||||||| | |||||||| |||| ||||   |||| |||||||||||    
T  41464958 ttttaattgcatgatttatttgttcactttctatttttcaaccacacctccttgaattgcggcaaatagtgcattgtgatccgctgcactttattcttg 41465056  T

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Target: chr2; HSP #11
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 14 - 98
Target Start/End: Original strand, 35676349 - 35676433
Alignment:
Q  14 atttatttgttcacttcctatttttcagctatatctccttgaattgtgacaaatagtacattatgattaactgctctttattctt 98  Q
    ||||||||||||||||| ||||||||||  | | |||||||||||||| |||||||| |||| || || ||||||||||||||||    
T  35676349 atttatttgttcacttcatatttttcagtcacacctccttgaattgtggcaaatagtgcattgtggttgactgctctttattctt 35676433  T

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Target: chr2; HSP #12
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 1 - 98
Target Start/End: Original strand, 29689279 - 29689373
Alignment:
Q  1 ttttaattgcatgatttatttgttcacttcctatttttcagctatatctccttgaattgtgacaaatagtacattatgattaactgctctttattctt 98  Q
    |||||||||||||||||||| ||||||||||||||||||||  | | ||||||||||| |  |||||||| |||| |||||   ||||||||||||||    
T  29689279 ttttaattgcatgatttattagttcacttcctatttttcagtcaaacctccttgaattatagcaaatagtgcattgtgatt---tgctctttattctt 29689373  T

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Target: chr2; HSP #13
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 28429421 - 28429323
Alignment:
Q  1 ttttaattgcatgatttatttgttcacttcctatttttcagctatatctccttgaattgtgacaaatagtacattatgattaactgctctttattcttg 99  Q
    |||||||||||||||||||||||||||||| ||||||||||  | | |||||| |||| || |||||| | |||| || ||  ||||||||||||||||    
T  28429421 ttttaattgcatgatttatttgttcacttcttatttttcagtcacacctccttaaattatggcaaataatgcattgtgtttggctgctctttattcttg 28429323  T

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Target: chr2; HSP #14
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 28716376 - 28716435
Alignment:
Q  1 ttttaattgcatgatttatttgttcacttcctatttttcagctatatctccttgaattgt 60  Q
    |||||||||||| ||||||||||||||||||||||||||||| | | ||| |||||||||    
T  28716376 ttttaattgcattatttatttgttcacttcctatttttcagccacacctctttgaattgt 28716435  T

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Target: chr2; HSP #15
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 35323534 - 35323632
Alignment:
Q  1 ttttaattgcatgatttatttgttcacttcctatttttcagctatatctccttgaattgtgacaaatagtacattatgattaactgctctttattcttg 99  Q
    |||||||| |||||||||| |||||| ||  ||||||||||| | | ||| |||||||||| ||||||||  ||| ||||| |||| ||||||||||||    
T  35323534 ttttaattacatgatttatatgttcagtttttatttttcagccacacctcattgaattgtggcaaatagtgtattgtgattgactgttctttattcttg 35323632  T

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Target: chr2; HSP #16
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 16058431 - 16058530
Alignment:
Q  1 ttttaattgcatgatttatttgttcacttcctatttttcagc--tatatctccttgaattgtgacaaatagtacattatgattaactgctctttattctt 98  Q
    ||||| ||||||||||||||| |||||||| |||||||||||   | | |||||||||||||||||||| || |||||| ||  ||| ||||||||||||    
T  16058431 ttttatttgcatgatttatttattcacttcatatttttcagccacacaactccttgaattgtgacaaat-gttcattattatagactactctttattctt 16058529  T

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Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 48 - 99
Target Start/End: Original strand, 23454366 - 23454418
Alignment:
Q  48 ctccttgaattgtgacaaat-agtacattatgattaactgctctttattcttg 99  Q
    |||||||||||||| ||||| ||| |||| ||||| |||||||||||||||||    
T  23454366 ctccttgaattgtgtcaaattagtgcattgtgattgactgctctttattcttg 23454418  T

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Target: chr3 (Bit Score: 67; Significance: 6e-30; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 521823 - 521921
Alignment:
Q  1 ttttaattgcatgatttatttgttcacttcctatttttcagctatatctccttgaattgtgacaaatagtacattatgattaactgctctttattcttg 99  Q
    |||||||||||||||||||||||||||||||||||||||||| | | |||||||||||||| |||||||| |||| |||||  ||||||||||||||||    
T  521823 ttttaattgcatgatttatttgttcacttcctatttttcagccacacctccttgaattgtggcaaatagtgcattgtgattggctgctctttattcttg 521921  T

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Target: chr3; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 5 - 99
Target Start/End: Original strand, 1561318 - 1561412
Alignment:
Q  5 aattgcatgatttatttgttcacttcctatttttcagctatatctccttgaattgtgacaaatagtacattatgattaactgctctttattcttg 99  Q
    |||||||||||||||||||||||||||||||||||||| | | |||||||||||||| |||||||| |||| |||||   |||||||||||||||    
T  1561318 aattgcatgatttatttgttcacttcctatttttcagccacacctccttgaattgtggcaaatagtgcattgtgattggttgctctttattcttg 1561412  T

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Target: chr3; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 20912307 - 20912209
Alignment:
Q  1 ttttaattgcatgatttatttgttcacttcctatttttcagctatatctccttgaattgtgacaaatagtacattatgattaactgctctttattcttg 99  Q
    |||||||||||||||||||||||||||||||||||||||||  | | |||||| |||| ||||||||||| |||| | ||| |||||||||||||||||    
T  20912307 ttttaattgcatgatttatttgttcacttcctatttttcagtcacacctccttaaattatgacaaatagtgcattgttattgactgctctttattcttg 20912209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 36517654 - 36517556
Alignment:
Q  1 ttttaattgcatgatttatttgttcacttcctatttttcagctatatctccttgaattgtgacaaatagtacattatgattaactgctctttattcttg 99  Q
    |||||||||||||||||||||||||||||||||||||| |   | | |||||||||||||| |||||||| |||| ||||| |||||||||||||||||    
T  36517654 ttttaattgcatgatttatttgttcacttcctattttttattcacacctccttgaattgtggcaaatagtgcattgtgattgactgctctttattcttg 36517556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 34624535 - 34624633
Alignment:
Q  1 ttttaattgcatgatttatttgttcacttcctatttttcagctatatctccttgaattgtgacaaatagtacattatgattaactgctctttattcttg 99  Q
    |||||||||||||||||||||||||||||||||||||||||| | |  ||||  |||||||  ||||||| |||| |||||  ||||||||||||||||    
T  34624535 ttttaattgcatgatttatttgttcacttcctatttttcagccacacttcctcaaattgtggtaaatagtgcattgtgattggctgctctttattcttg 34624633  T

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Target: chr3; HSP #6
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 38176448 - 38176546
Alignment:
Q  1 ttttaattgcatgatttatttgttcacttcctatttttcagctatatctccttgaattgtgacaaatagtacattatgattaactgctctttattcttg 99  Q
    ||||||||||||| |||||||||||||||| ||||||||||| | | |||||||||||| | |||||||| ||||  ||||  ||||||||||||||||    
T  38176448 ttttaattgcatgttttatttgttcacttcatatttttcagccacacctccttgaattgaggcaaatagtgcattgcgattggctgctctttattcttg 38176546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 95
Target Start/End: Complemental strand, 45166366 - 45166272
Alignment:
Q  1 ttttaattgcatgatttatttgttcacttcctatttttcagctatatctccttgaattgtgacaaatagtacattatgattaactgctctttatt 95  Q
    ||||||||||||||||||||||| |||| ||||||||||||| |   |||||||||||||| |||||||| |||| |||||  ||||||||||||    
T  45166366 ttttaattgcatgatttatttgtccactccctatttttcagccacgcctccttgaattgtggcaaatagtgcattgtgattggctgctctttatt 45166272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 50612933 - 50613031
Alignment:
Q  1 ttttaattgcatgatttatttgttcacttcctatttttcagctatatctccttgaattgtgacaaatagtacattatgattaactgctctttattcttg 99  Q
    |||||||||||| ||||||||||||||||  ||||||||||  | | |||||||||||||| |||||||| |||| |||||  ||||||||||||||||    
T  50612933 ttttaattgcataatttatttgttcactttatatttttcagtcacacctccttgaattgtggcaaatagtgcattgtgattggctgctctttattcttg 50613031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 52546882 - 52546784
Alignment:
Q  1 ttttaattgcatgatttatttgttcacttcctatttttcagctatatctccttgaattgtgacaaatagtacattatgattaactgctctttattcttg 99  Q
    |||||||||||| ||||||||||||| |||||||||||||   | | ||| |||||||||||||||||| ||||| |||||  ||||||||||||||||    
T  52546882 ttttaattgcataatttatttgttcatttcctatttttcactcacacctcattgaattgtgacaaatagcacattgtgattggctgctctttattcttg 52546784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 31788445 - 31788347
Alignment:
Q  1 ttttaattgcatgatttatttgttcacttcctatttttcagctatatctccttgaattgtgacaaatagtacattatgattaactgctctttattcttg 99  Q
    |||||| |||| ||||||||||||||||||||||||||||   | | ||||||||||||||  ||||||| |||| |||||  ||||||||||||||||    
T  31788445 ttttaactgcaagatttatttgttcacttcctatttttcaatcacacctccttgaattgtggtaaatagtgcattgtgattggctgctctttattcttg 31788347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 23643038 - 23643136
Alignment:
Q  1 ttttaattgcatgatttatttgttcacttcctatttttcagctatatctccttgaattgtgacaaatagtacattatgattaactgctctttattcttg 99  Q
    |||||||| ||| ||||||||||||||||||||||||| ||  | | |||||||||||||| |||||||| |||| ||||| |||  | ||||||||||    
T  23643038 ttttaattccataatttatttgttcacttcctattttttagtcacacctccttgaattgtggcaaatagtgcattgtgattgactaatatttattcttg 23643136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 51297084 - 51297158
Alignment:
Q  1 ttttaattgcatgatttatttgttcacttcctatttttcagctatatctccttgaattgtgacaaatagtacatt 75  Q
    ||||||||||||||||||||||||||||| |||||||||||  ||| ||  |||||||||| |||||||| ||||    
T  51297084 ttttaattgcatgatttatttgttcactttctatttttcagtcatacctttttgaattgtggcaaatagtgcatt 51297158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 98
Target Start/End: Complemental strand, 39145391 - 39145294
Alignment:
Q  1 ttttaattgcatgatttatttgttcacttcctatttttcagctatatctccttgaattgtgacaaatagtacattatgattaactgctctttattctt 98  Q
    ||||||||| ||||||| |||||||| ||||||||||||||  ||| ||| |||||||||  |||||||| |||| | |||  ||||| |||||||||    
T  39145391 ttttaattgtatgatttctttgttcatttcctatttttcagtcatacctcattgaattgtagcaaatagtgcattgtaattggctgctttttattctt 39145294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 42
Target Start/End: Complemental strand, 9496669 - 9496629
Alignment:
Q  2 tttaattgcatgatttatttgttcacttcctatttttcagc 42  Q
    ||||| ||||||||||||||||||||| |||||||||||||    
T  9496669 tttaactgcatgatttatttgttcactccctatttttcagc 9496629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 22650454 - 22650514
Alignment:
Q  1 ttttaattgcatgatttatttgttcacttcctatttttcagctatatctccttgaattgtg 61  Q
    |||||||||||||||||||||||||||||  || |||||||| | | |||||| |||||||    
T  22650454 ttttaattgcatgatttatttgttcactttttacttttcagccacacctccttaaattgtg 22650514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 41
Target Start/End: Complemental strand, 15461680 - 15461641
Alignment:
Q  2 tttaattgcatgatttatttgttcacttcctatttttcag 41  Q
    ||||| ||||||||||||||||||||||| ||||||||||    
T  15461680 tttaactgcatgatttatttgttcacttcttatttttcag 15461641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 63; Significance: 2e-27; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 3456892 - 3456794
Alignment:
Q  1 ttttaattgcatgatttatttgttcacttcctatttttcagctatatctccttgaattgtgacaaatagtacattatgattaactgctctttattcttg 99  Q
    |||||||||||||||||||||||||||||||||||||||||  | | |||||||||||||| |||||||| |||| ||| | |||||||||||||||||    
T  3456892 ttttaattgcatgatttatttgttcacttcctatttttcagtcacacctccttgaattgtggcaaatagtgcattgtgagtgactgctctttattcttg 3456794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 11739278 - 11739376
Alignment:
Q  1 ttttaattgcatgatttatttgttcacttcctatttttcagctatatctccttgaattgtgacaaatagtacattatgattaactgctctttattcttg 99  Q
    |||||||||||| |||||||||||||| |||||||||||||| | | |||||||||||||| |||| ||| ||||||||||| ||||| ||||||||||    
T  11739278 ttttaattgcataatttatttgttcacctcctatttttcagccacacctccttgaattgtggcaaacagtgcattatgattacctgctttttattcttg 11739376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 37093970 - 37094068
Alignment:
Q  1 ttttaattgcatgatttatttgttcacttcctatttttcagctatatctccttgaattgtgacaaatagtacattatgattaactgctctttattcttg 99  Q
    |||||||||||| ||||||||||||||||||||||||||||  | | |||||||||||||  ||||||||||| | ||||| |||||||||||||||||    
T  37093970 ttttaattgcataatttatttgttcacttcctatttttcagtcacacctccttgaattgttgcaaatagtacaatgtgattgactgctctttattcttg 37094068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 4391904 - 4392002
Alignment:
Q  1 ttttaattgcatgatttatttgttcacttcctatttttcagctatatctccttgaattgtgacaaatagtacattatgattaactgctctttattcttg 99  Q
    |||||||||||| ||||||||||||||||||||||||||||| | | |||||||||||||| |||| ||| |||| | |||  ||||||||||||||||    
T  4391904 ttttaattgcataatttatttgttcacttcctatttttcagccacagctccttgaattgtggcaaacagtgcattgtaattggctgctctttattcttg 4392002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 32891314 - 32891216
Alignment:
Q  1 ttttaattgcatgatttatttgttcacttcctatttttcagctatatctccttgaattgtgacaaatagtacattatgattaactgctctttattcttg 99  Q
    |||||||||||||||||||||||||||||||||| ||| ||| | | |||||||||||||| |||||||| |||| |||||  ||||| ||||||||||    
T  32891314 ttttaattgcatgatttatttgttcacttcctatcttttagccacacctccttgaattgtggcaaatagtgcattgtgattggctgctttttattcttg 32891216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 8692648 - 8692550
Alignment:
Q  1 ttttaattgcatgatttatttgttcacttcctatttttcagctatatctccttgaattgtgacaaatagtacattatgattaactgctctttattcttg 99  Q
    ||||||||||||||||||||| ||||||| ||||||||| || | |  ||||||||||||| |||||||||||||||||||   |||| ||||||||||    
T  8692648 ttttaattgcatgatttatttattcactttctatttttctgccacacttccttgaattgtggcaaatagtacattatgattggatgctatttattcttg 8692550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 38614239 - 38614337
Alignment:
Q  1 ttttaattgcatgatttatttgttcacttcctatttttcagctatatctccttgaattgtgacaaatagtacattatgattaactgctctttattcttg 99  Q
    |||||||||||||||||||||||| ||||||||||||||||| | |||| ||||||||||| ||| |||| |||| |||||    ||||||||||||||    
T  38614239 ttttaattgcatgatttatttgtttacttcctatttttcagccacatcttcttgaattgtggcaattagtgcattgtgattgggcgctctttattcttg 38614337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 1 - 91
Target Start/End: Complemental strand, 29223603 - 29223513
Alignment:
Q  1 ttttaattgcatgatttatttgttcacttcctatttttcagctatatctccttgaattgtgacaaatagtacattatgattaactgctctt 91  Q
    ||||||||||||||||||||||| |||||| ||||||||||  | | |||||||||||||| |||||||| |||| || || |||||||||    
T  29223603 ttttaattgcatgatttatttgtacacttcttatttttcagtcacacctccttgaattgtggcaaatagtgcattgtggttgactgctctt 29223513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 35672369 - 35672466
Alignment:
Q  1 ttttaattgcatgatttatttgttcacttcctatttttcagctatatctccttgaattgtgacaaatagtacattatgattaactgctctttattcttg 99  Q
    ||||||||||||||||||||||||||||||||||| || | | | || ||||| ||||| || ||||||| |||| ||||| |||||||||||||||||    
T  35672369 ttttaattgcatgatttatttgttcacttcctattgttta-caacatttccttaaattgcgataaatagtgcattgtgattgactgctctttattcttg 35672466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 17 - 99
Target Start/End: Original strand, 41326523 - 41326605
Alignment:
Q  17 tatttgttcacttcctatttttcagctatatctccttgaattgtgacaaatagtacattatgattaactgctctttattcttg 99  Q
    |||||||| ||||||||||||||||| | | |||||||||||||| ||||||| ||||| |||||  ||||||||||||||||    
T  41326523 tatttgtttacttcctatttttcagccacacctccttgaattgtgtcaaatagcacattgtgattggctgctctttattcttg 41326605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 6614305 - 6614365
Alignment:
Q  1 ttttaattgcatgatttatttgttcacttcctatttttcagctatatctccttgaattgtg 61  Q
    |||||||||||||||||||||||||||||||||||||||||  | | ||||||||||||||    
T  6614305 ttttaattgcatgatttatttgttcacttcctatttttcaggcacacctccttgaattgtg 6614365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 228163 - 228065
Alignment:
Q  1 ttttaattgcatgatttatttgttcacttcctatttttcagctatatctccttgaattgtgacaaatagtacattatgattaactgctctttattcttg 99  Q
    ||||||||||||||| ||||||||||||| ||| |||||||  | | ||||||||||||||  ||||||| |||| ||||| | || ||||||||||||    
T  228163 ttttaattgcatgatatatttgttcactttctacttttcagtcacacctccttgaattgtggtaaatagtgcattgtgattgattgttctttattcttg 228065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 40925975 - 40925915
Alignment:
Q  1 ttttaattgcatgatttatttgttcacttcctatttttcagctatatctccttgaattgtg 61  Q
    ||||||||| |||||||||||||||||||||||||||||||| | | ||| ||||||||||    
T  40925975 ttttaattgtatgatttatttgttcacttcctatttttcagccacacctctttgaattgtg 40925915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 34286733 - 34286636
Alignment:
Q  1 ttttaattgcatgatttatttgttcacttcctatttttcagctatatctccttgaattgtgacaaatagtacattatgattaactgctctttattcttg 99  Q
    |||||||||||||||||||||||||| ||||||||||||||| | | || | | ||||||| |||||||| |||  |||||  ||||| ||||||||||    
T  34286733 ttttaattgcatgatttatttgttcatttcctatttttcagccacaccttcattaattgtggcaaatagtgcatcgtgattggctgct-tttattcttg 34286636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 98
Target Start/End: Original strand, 16516975 - 16517072
Alignment:
Q  1 ttttaattgcatgatttatttgttcacttcctatttttcagctatatctccttgaattgtgacaaatagtacattatgattaactgctctttattctt 98  Q
    |||||||| |||||||||||||||||||  ||||| |||||| | |||||| || |||||  |||  |||  ||||||||| ||||||||||||||||    
T  16516975 ttttaatttcatgatttatttgttcactctctattattcagcaacatctccgtgtattgttgcaagcagtgaattatgattgactgctctttattctt 16517072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 5481492 - 5481425
Alignment:
Q  1 ttttaattgcatgatttatttgttcacttcctatttttcagctatatctccttgaattgtgacaaata 68  Q
    |||||| ||||||||||||||||||||||  ||||||||||| | |||||  ||||||||| ||||||    
T  5481492 ttttaactgcatgatttatttgttcactttttatttttcagccacatctctatgaattgtggcaaata 5481425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 31644766 - 31644727
Alignment:
Q  1 ttttaattgcatgatttatttgttcacttcctatttttca 40  Q
    ||||||||||||| ||||||||||||||||||||||||||    
T  31644766 ttttaattgcatggtttatttgttcacttcctatttttca 31644727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 95
Target Start/End: Complemental strand, 28434341 - 28434247
Alignment:
Q  1 ttttaattgcatgatttatttgttcacttcctatttttcagctatatctccttgaattgtgacaaatagtacattatgattaactgctctttatt 95  Q
    ||||||||||||||||||||| |||| || ||||||| |||  | |||| ||| |||||||  ||||||| |||| | |||  ||||||||||||    
T  28434341 ttttaattgcatgatttatttattcattttctattttacagtcacatcttcttaaattgtggtaaatagtgcattgtaattggctgctctttatt 28434247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 48 - 105
Target Start/End: Complemental strand, 42148951 - 42148894
Alignment:
Q  48 ctccttgaattgtgacaaatagtacattatgattaactgctctttattcttggtatta 105  Q
    ||||||||||| || ||||||||||||| ||||| | |||| |||||||||| |||||    
T  42148951 ctccttgaattatgtcaaatagtacattgtgattgagtgctatttattcttgatatta 42148894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 492806 - 492708
Alignment:
Q  1 ttttaattgcatgatttatttgttcacttcctatttttcagctatatctccttgaattgtgacaaatagtacattatgattaactgctctttattcttg 99  Q
    |||||||||||| ||||||||||||| ||||||||||||||| | | |||||||||||||||||||| || |||| |||||  ||||||||||||||||    
T  492806 ttttaattgcataatttatttgttcatttcctatttttcagccacacctccttgaattgtgacaaattgtgcattgtgattggctgctctttattcttg 492708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 59; Significance: 4e-25; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 36473108 - 36473206
Alignment:
Q  1 ttttaattgcatgatttatttgttcacttcctatttttcagctatatctccttgaattgtgacaaatagtacattatgattaactgctctttattcttg 99  Q
    |||||||||||||||||||||||||||||||||||||||||| | | |||||| ||||||| ||||||||  | | ||||| |||||||||||||||||    
T  36473108 ttttaattgcatgatttatttgttcacttcctatttttcagccacacctccttaaattgtgtcaaatagtgtactgtgattgactgctctttattcttg 36473206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 98
Target Start/End: Complemental strand, 4851873 - 4851776
Alignment:
Q  1 ttttaattgcatgatttatttgttcacttcctatttttcagctatatctccttgaattgtgacaaatagtacattatgattaactgctctttattctt 98  Q
    |||||||||||||||||||||||| | ||||||||||||||| | |  ||||| |||||||  ||||||| |||||||||| ||||||||||||||||    
T  4851873 ttttaattgcatgatttatttgtttatttcctatttttcagccacacttccttaaattgtggaaaatagtgcattatgattgactgctctttattctt 4851776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 98
Target Start/End: Original strand, 15561973 - 15562070
Alignment:
Q  1 ttttaattgcatgatttatttgttcacttcctatttttcagctatatctccttgaattgtgacaaatagtacattatgattaactgctctttattctt 98  Q
    ||||||||| |||||||||||||||||||||||||||||||| | | |||||||||||||| |||||| | ||||| |||| |||| | |||||||||    
T  15561973 ttttaattgtatgatttatttgttcacttcctatttttcagccacacctccttgaattgtggcaaataatgcattacgattgactgttatttattctt 15562070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 34392248 - 34392150
Alignment:
Q  1 ttttaattgcatgatttatttgttcacttcctatttttcagctatatctccttgaattgtgacaaatagtacattatgattaactgctctttattcttg 99  Q
    |||||||||||||||||||||||||||||   |||||||||| | | || ||| ||||||| ||||||||||||| ||||| | |||||||||||||||    
T  34392248 ttttaattgcatgatttatttgttcacttttcatttttcagccacaccttcttaaattgtggcaaatagtacattgtgattgagtgctctttattcttg 34392150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 41322669 - 41322571
Alignment:
Q  1 ttttaattgcatgatttatttgttcacttcctatttttcagctatatctccttgaattgtgacaaatagtacattatgattaactgctctttattcttg 99  Q
    |||||||||||||||||| ||||| ||||||||||||||  | | | ||||||||||| | ||||||||| |||| ||||| |||||||||||||||||    
T  41322669 ttttaattgcatgatttaattgttaacttcctatttttctaccacacctccttgaattttcacaaatagtgcattgtgattgactgctctttattcttg 41322571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 11643423 - 11643325
Alignment:
Q  1 ttttaattgcatgatttatttgttcacttcctatttttcagctatatctccttgaattgtgacaaatagtacattatgattaactgctctttattcttg 99  Q
    ||||||||| |||||||||||||||||||| ||||||||| ||| |  | ||| |||||||  ||||||| |||| ||||| |||||||||||||||||    
T  11643423 ttttaattgtatgatttatttgttcacttcgtatttttcaactacactttcttaaattgtggtaaatagtgcattgtgattgactgctctttattcttg 11643325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 98
Target Start/End: Complemental strand, 29314139 - 29314042
Alignment:
Q  1 ttttaattgcatgatttatttgttcacttcctatttttcagctatatctccttgaattgtgacaaatagtacattatgattaactgctctttattctt 98  Q
    |||||||||||| |||||||||| ||||| |||||||||||  | | |||||| ||||||| |||||||| |||| ||||| ||| ||||||||||||    
T  29314139 ttttaattgcattatttatttgtccactttctatttttcagtcacacctccttaaattgtggcaaatagtgcattgtgattgacttctctttattctt 29314042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 95
Target Start/End: Complemental strand, 39112788 - 39112694
Alignment:
Q  1 ttttaattgcatgatttatttgttcacttcctatttttcagctatatctccttgaattgtgacaaatagtacattatgattaactgctctttatt 95  Q
    ||||||||| ||||||||||||||||||| ||||||||||||   | ||||||||||| || |||||||| |||| |||||   |||||||||||    
T  39112788 ttttaattggatgatttatttgttcactttctatttttcagccgcacctccttgaattatggcaaatagtgcattgtgattggttgctctttatt 39112694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 98
Target Start/End: Complemental strand, 1005729 - 1005632
Alignment:
Q  1 ttttaattgcatgatttatttgttcacttcctatttttcagctatatctccttgaattgtgacaaatagtacattatgattaactgctctttattctt 98  Q
    |||||||||||| ||||||||||||||||||||||||||||  | | ||| || ||||||| ||||| || |||||| ||| | | ||||||||||||    
T  1005729 ttttaattgcataatttatttgttcacttcctatttttcagtcacacctctttaaattgtgtcaaatggtgcattataattgattactctttattctt 1005632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 11653770 - 11653871
Alignment:
Q  1 ttttaattgcatgatttatttgttcacttcctatttttcagctatatctccttgaattgtgacaaatagtacatta----tgattaactgctctttattc 96  Q
    |||||||| |||||||||||||||||||| || ||||| ||| | |  ||||||||||||| ||||||||||||||    ||||| ||||||||||||||    
T  11653770 ttttaattacatgatttatttgttcacttact-tttttaagccacacatccttgaattgtggcaaatagtacattatgattgattgactgctctttattc 11653868  T
Q  97 ttg 99  Q
    |||    
T  11653869 ttg 11653871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 6 - 98
Target Start/End: Original strand, 37919603 - 37919695
Alignment:
Q  6 attgcatgatttatttgttcacttcctatttttcagctatatctccttgaattgtgacaaatagtacattatgattaactgctctttattctt 98  Q
    |||||||||||||||||||||||| ||||||||||   | |||||||| |||||||||||||| | |||| ||||| | || | |||||||||    
T  37919603 attgcatgatttatttgttcacttactatttttcactcacatctccttaaattgtgacaaataatgcattgtgattgattgttatttattctt 37919695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 2001787 - 2001690
Alignment:
Q  1 ttttaattgcatgatttatttgttcacttcctatttttcagctatatctccttgaattgtgacaaatagtacattatgattaactgctctttattcttg 99  Q
    |||||||| |||||||||||||||||||  ||||||| |||| | | |||||| ||||||| ||||| ||  ||| ||||| |||||||||||||||||    
T  2001787 ttttaattacatgatttatttgttcactatctattttccagccacacctccttaaattgtggcaaatcgtgtatt-tgattgactgctctttattcttg 2001690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 33888988 - 33888947
Alignment:
Q  1 ttttaattgcatgatttatttgttcacttcctatttttcagc 42  Q
    |||||||||||| ||||||||||||||| |||||||||||||    
T  33888988 ttttaattgcataatttatttgttcactccctatttttcagc 33888947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 4 - 99
Target Start/End: Complemental strand, 5549072 - 5548977
Alignment:
Q  4 taattgcatgatttatttgttcacttcctatttttcagctatatctccttgaattgtgacaaatagtacattatgattaactgctctttattcttg 99  Q
    ||||||||||||||||||||||||| |||||| |||||  | | | || || ||| || ||| || |  ||||||||| |||||||||||||||||    
T  5549072 taattgcatgatttatttgttcactccctattgttcagggacaccaccgtgtattatggcaagtactgaattatgattgactgctctttattcttg 5548977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 5 - 66
Target Start/End: Complemental strand, 8551625 - 8551564
Alignment:
Q  5 aattgcatgatttatttgttcacttcctatttttcagctatatctccttgaattgtgacaaa 66  Q
    |||||||||||||||||||||| || |||||||| | | | |||||||| ||||||| ||||    
T  8551625 aattgcatgatttatttgttcattttctattttttaaccacatctcctttaattgtggcaaa 8551564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 59; Significance: 4e-25; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 25935648 - 25935550
Alignment:
Q  1 ttttaattgcatgatttatttgttcacttcctatttttcagctatatctccttgaattgtgacaaatagtacattatgattaactgctctttattcttg 99  Q
    |||||||| |||||||||||  ||||||| |||||||||||| | | |||||| ||||||||||||||||||||||||||||  |||||||||||||||    
T  25935648 ttttaattacatgatttattctttcactttctatttttcagccacacctccttaaattgtgacaaatagtacattatgattagatgctctttattcttg 25935550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 7646833 - 7646927
Alignment:
Q  1 ttttaattgcatgatttatttgttcacttcctatttttcagctatatctccttgaattgtgacaaatagtacattatgattaactgctctttatt 95  Q
    |||||||||||||||||||||||||| ||||||||||||||  | |  ||||||||||||| |||||||| |||| |||||  ||||||||||||    
T  7646833 ttttaattgcatgatttatttgttcatttcctatttttcagtcacacatccttgaattgtggcaaatagtgcattgtgattggctgctctttatt 7646927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 5 - 99
Target Start/End: Original strand, 12607123 - 12607217
Alignment:
Q  5 aattgcatgatttatttgttcacttcctatttttcagctatatctccttgaattgtgacaaatagtacattatgattaactgctctttattcttg 99  Q
    ||||||||||||||||||||||||| |||||||||||  | | |||||| ||||||| |||||||| || | ||||| |||||||||||||||||    
T  12607123 aattgcatgatttatttgttcactttctatttttcagtcacacctccttaaattgtggcaaatagtgcactgtgattgactgctctttattcttg 12607217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 6 - 98
Target Start/End: Original strand, 29487579 - 29487671
Alignment:
Q  6 attgcatgatttatttgttcacttcctatttttcagctatatctccttgaattgtgacaaatagtacattatgattaactgctctttattctt 98  Q
    ||||||||||||||||||||||| ||||||||||||| | | ||| || ||||||| |||||||| || | ||||| ||| ||||||||||||    
T  29487579 attgcatgatttatttgttcactccctatttttcagccacacctcatttaattgtggcaaatagtgcaatgtgattgactactctttattctt 29487671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 15 - 97
Target Start/End: Complemental strand, 29637081 - 29636999
Alignment:
Q  15 tttatttgttcacttcctatttttcagctatatctccttgaattgtgacaaatagtacattatgattaactgctctttattct 97  Q
    ||||||||||||||| ||||||||||||| || ||||||| |||||| ||||||||   || ||||| |||||||||||||||    
T  29637081 tttatttgttcactttctatttttcagctttacctccttgtattgtggcaaatagttagttgtgattgactgctctttattct 29636999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 28898441 - 28898482
Alignment:
Q  1 ttttaattgcatgatttatttgttcacttcctatttttcagc 42  Q
    |||||||||||||||||||||||||||| |||||||| ||||    
T  28898441 ttttaattgcatgatttatttgttcactccctattttacagc 28898482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 59; Significance: 4e-25; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 29095581 - 29095679
Alignment:
Q  1 ttttaattgcatgatttatttgttcacttcctatttttcagctatatctccttgaattgtgacaaatagtacattatgattaactgctctttattcttg 99  Q
    ||||||||||||||| | |||||||||||||||||||||||| | | |||||||||||||| |||||||| |||| |||||  ||||||||||||||||    
T  29095581 ttttaattgcatgatatctttgttcacttcctatttttcagccacacctccttgaattgtggcaaatagtgcattgtgattggctgctctttattcttg 29095679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 31032756 - 31032854
Alignment:
Q  1 ttttaattgcatgatttatttgttcacttcctatttttcagctatatctccttgaattgtgacaaatagtacattatgattaactgctctttattcttg 99  Q
    ||||||||||||||||||||||||||||| |||||||||||| | | ||||||||| |||| |||||||| |||| ||||| |||| ||||||||||||    
T  31032756 ttttaattgcatgatttatttgttcactttctatttttcagccacacctccttgaactgtggcaaatagtgcattgtgattgactgatctttattcttg 31032854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 24135893 - 24135797
Alignment:
Q  1 ttttaattgcatgatttatttgttcacttcctatttttcagctatatctccttgaattgtgacaaatagtacattatgattaactgctctttattcttg 99  Q
    |||||||||||||||||||||||||||||||||||||||||| | | |||||||||||||| |||||  | |||| |||||  ||||||||||||||||    
T  24135893 ttttaattgcatgatttatttgttcacttcctatttttcagccacacctccttgaattgtggcaaat--tgcattgtgattggctgctctttattcttg 24135797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 20809087 - 20808989
Alignment:
Q  1 ttttaattgcatgatttatttgttcacttcctatttttcagctatatctccttgaattgtgacaaatagtacattatgattaactgctctttattcttg 99  Q
    |||||||| |||| |||||| |||||||||||| |||||||| | |||||||||||||||| |||||| | |||| ||||| |||||||||||||||||    
T  20809087 ttttaattacatggtttattcgttcacttcctagttttcagccacatctccttgaattgtggcaaataatgcattgtgattgactgctctttattcttg 20808989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 34476039 - 34475941
Alignment:
Q  1 ttttaattgcatgatttatttgttcacttcctatttttcagctatatctccttgaattgtgacaaatagtacattatgattaactgctctttattcttg 99  Q
    |||||||||||||||| ||||||||||||||||||||||||| | | |||||||||||| | || ||||| |||| |||||  ||||||||||||||||    
T  34476039 ttttaattgcatgattgatttgttcacttcctatttttcagccacacctccttgaattggggcagatagtgcattgtgattggctgctctttattcttg 34475941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 1 - 95
Target Start/End: Complemental strand, 34808076 - 34807982
Alignment:
Q  1 ttttaattgcatgatttatttgttcacttcctatttttcagctatatctccttgaattgtgacaaatagtacattatgattaactgctctttatt 95  Q
    ||||||||||||||||||||| |||||||| ||||||||||| | | |||||| |||| ||| |||||||||||| ||||| |||||||||||||    
T  34808076 ttttaattgcatgatttatttattcacttcatatttttcagccacacctccttaaattatgataaatagtacattgtgattgactgctctttatt 34807982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 1270311 - 1270213
Alignment:
Q  1 ttttaattgcatgatttatttgttcacttcctatttttcagctatatctccttgaattgtgacaaatagtacattatgattaactgctctttattcttg 99  Q
    ||||||||||| ||||||||| |||||||||||||||||||| | | || ||||||||||| |||||||| ||||  ||||   |||||||||||||||    
T  1270311 ttttaattgcacgatttatttattcacttcctatttttcagccacaccttcttgaattgtggcaaatagtgcattgagattggttgctctttattcttg 1270213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 4 - 81
Target Start/End: Original strand, 2958753 - 2958830
Alignment:
Q  4 taattgcatgatttatttgttcacttcctatttttcagctatatctccttgaattgtgacaaatagtacattatgatt 81  Q
    ||||||||||||||||||||||||| ||||||||||||| | | ||||||||||| || |||||||| |||| |||||    
T  2958753 taattgcatgatttatttgttcactccctatttttcagccacacctccttgaattttggcaaatagtgcattgtgatt 2958830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 2 - 99
Target Start/End: Complemental strand, 16254993 - 16254896
Alignment:
Q  2 tttaattgcatgatttatttgttcacttcctatttttcagctatatctccttgaattgtgacaaatagtacattatgattaactgctctttattcttg 99  Q
    |||||||| ||||||||||||||||||||||||| |||||| | | |||||| |||| || |||||||| |||| |||||  ||| ||||||||||||    
T  16254993 tttaattgtatgatttatttgttcacttcctattattcagccacacctccttaaattatggcaaatagtgcattgtgattggctgatctttattcttg 16254896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 16 - 99
Target Start/End: Complemental strand, 4194891 - 4194808
Alignment:
Q  16 ttatttgttcacttcctatttttcagctatatctccttgaattgtgacaaatagtacattatgattaactgctctttattcttg 99  Q
    ||||||||||||||||||||||||||  ||||||| ||||||| ||  |||||||| ||| ||||| |||| ||||||||||||    
T  4194891 ttatttgttcacttcctatttttcagtcatatctctttgaattatggtaaatagtatattgtgattgactgttctttattcttg 4194808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 47550931 - 47550833
Alignment:
Q  1 ttttaattgcatgatttatttgttcacttcctatttttcagctatatctccttgaattgtgacaaatagtacattatgattaactgctctttattcttg 99  Q
    ||||||||||||||||||| |||||| ||||||||||| ||  | | |||||| ||||||| |||||||| |||| | |||  ||||||||||||||||    
T  47550931 ttttaattgcatgatttatatgttcatttcctattttttagtcacacctccttaaattgtggcaaatagtgcattgtaatttgctgctctttattcttg 47550833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 4624485 - 4624444
Alignment:
Q  1 ttttaattgcatgatttatttgttcacttcctatttttcagc 42  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  4624485 ttttaattgcatgatttatttgttcacttcctatttttcagc 4624444  T

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Target: chr1; HSP #13
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 98
Target Start/End: Complemental strand, 45010339 - 45010243
Alignment:
Q  1 ttttaattgcatgatttatttgttcacttcctatttttcagctatatctccttgaattgtgacaaatagtacattatgattaactgctctttattctt 98  Q
    |||||||||||||||||||||||||||||| ||||||||||| | | || | |||||||||||||||| | ||||||  ||   ||||||||||||||    
T  45010339 ttttaattgcatgatttatttgttcacttcttatttttcagccacaccttc-tgaattgtgacaaataatgcattatatttggatgctctttattctt 45010243  T

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Target: chr1; HSP #14
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 42480261 - 42480163
Alignment:
Q  1 ttttaattgcatgatttatttgttcacttcctatttttcagctatatctccttgaattgtgacaaatagtacattatgattaactgctctttattcttg 99  Q
    |||||||||||| |||||||| |||| || |||||||||||| | | ||| ||||||||||  ||||| |||||| | ||| |||||| ||||||||||    
T  42480261 ttttaattgcataatttatttattcattttctatttttcagccacacctcattgaattgtggtaaataatacattgtaattgactgctatttattcttg 42480163  T

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Target: chr1; HSP #15
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 94
Target Start/End: Original strand, 44714867 - 44714960
Alignment:
Q  1 ttttaattgcatgatttatttgttcacttcctatttttcagctatatctccttgaattgtgacaaatagtacattatgattaactgctctttat 94  Q
    ||||||||| ||||||||||| || | ||  ||||||||||| | ||||| |||||||||| |||||| | |||| ||||| ||||||||||||    
T  44714867 ttttaattgtatgatttatttttttattttttatttttcagccacatctcgttgaattgtggcaaataatgcattgtgattgactgctctttat 44714960  T

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Target: chr1; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 98
Target Start/End: Original strand, 9098628 - 9098722
Alignment:
Q  1 ttttaattgcatgatttatttgttcacttcctatttttcagctatatctccttgaattgtgacaaatagtacattatgattaactgctctttattctt 98  Q
    |||||||||||||||||||||||||||||| |||| |||||| | | || ||||||   || || ||||| |||| |||||  |||||||||||||||    
T  9098628 ttttaattgcatgatttatttgttcacttcgtattattcagccacaccttcttgaa---tggcagatagtgcattgtgattggctgctctttattctt 9098722  T

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Target: chr7 (Bit Score: 58; Significance: 1e-24; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 1 - 98
Target Start/End: Original strand, 27425812 - 27425909
Alignment:
Q  1 ttttaattgcatgatttatttgttcacttcctatttttcagctatatctccttgaattgtgacaaatagtacattatgattaactgctctttattctt 98  Q
    |||||||||||||||||||||||||||||||||||||||| | | | |||||||||||||| |||||| | |||| ||||| |||| |||||||||||    
T  27425812 ttttaattgcatgatttatttgttcacttcctatttttcaaccacaactccttgaattgtggcaaataatgcattgtgattgactgttctttattctt 27425909  T

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Target: chr7; HSP #2
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 22326998 - 22326900
Alignment:
Q  1 ttttaattgcatgatttatttgttcacttcctatttttcagctatatctccttgaattgtgacaaatagtacattatgattaactgctctttattcttg 99  Q
    ||||||||||||||||||||||||||||| |||||||||||  | | |||| ||||||||| ||||||||||||| ||||| || ||||||| ||||||    
T  22326998 ttttaattgcatgatttatttgttcactttctatttttcagtcacacctccctgaattgtggcaaatagtacattgtgattgacggctctttcttcttg 22326900  T

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Target: chr7; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 17611982 - 17611884
Alignment:
Q  1 ttttaattgcatgatttatttgttcacttcctatttttcagctatatctccttgaattgtgacaaatagtacattatgattaactgctctttattcttg 99  Q
    ||||||||| ||||||||||| |||||||||||||||| ||| | |||||||||||||||| |||||| | ||||||||||   || ||||||||||||    
T  17611982 ttttaattgtatgatttatttattcacttcctattttttagccacatctccttgaattgtggcaaataattcattatgattggttgttctttattcttg 17611884  T

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Target: chr7; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 23992009 - 23992107
Alignment:
Q  1 ttttaattgcatgatttatttgttcacttcctatttttcagctatatctccttgaattgtgacaaatagtacattatgattaactgctctttattcttg 99  Q
    ||||||||||||||| | ||||||||||| |||||||||||| | | |||||||||||||| |||||||| |||| ||||   ||||||||||||||||    
T  23992009 ttttaattgcatgatatttttgttcactttctatttttcagccacacctccttgaattgtggcaaatagtgcattgtgataggctgctctttattcttg 23992107  T

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Target: chr7; HSP #5
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 1 - 91
Target Start/End: Complemental strand, 42195517 - 42195427
Alignment:
Q  1 ttttaattgcatgatttatttgttcacttcctatttttcagctatatctccttgaattgtgacaaatagtacattatgattaactgctctt 91  Q
    |||||||||||||||||||||||||||| | ||||||||||  | | ||||||||||||||  ||||||| ||||  ||||||||||||||    
T  42195517 ttttaattgcatgatttatttgttcactccttatttttcagacacacctccttgaattgtggtaaatagtgcattgagattaactgctctt 42195427  T

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Target: chr7; HSP #6
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 1 - 98
Target Start/End: Complemental strand, 8307662 - 8307568
Alignment:
Q  1 ttttaattgcatgatttatttgttcacttcctatttttcagctatatctccttgaattgtgacaaatagtacattatgattaactgctctttattctt 98  Q
    |||||| ||||||||||||||||||||||||||||||| ||| |   | |||||||||||| | |||||| |||||||||| |||  |||||||||||    
T  8307662 ttttaactgcatgatttatttgttcacttcctatttttgagcca---caccttgaattgtggctaatagtgcattatgattgactcgtctttattctt 8307568  T

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Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 18 - 99
Target Start/End: Complemental strand, 25686488 - 25686407
Alignment:
Q  18 atttgttcacttcctatttttcagctatatctccttgaattgtgacaaatagtacattatgattaactgctctttattcttg 99  Q
    ||||||| |||||||||||| |||| | | |||||| |||||||  |||||||||||||||||| | || ||||||||||||    
T  25686488 atttgtttacttcctattttccagccacacctccttaaattgtggtaaatagtacattatgattgattgttctttattcttg 25686407  T

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Target: chr4 (Bit Score: 55; Significance: 9e-23; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 18375450 - 18375547
Alignment:
Q  1 ttttaattgcatgatttatttgttcacttcctatttttcagctatatctccttgaattgtgacaaatagtacattatgattaactgctctttattcttg 99  Q
    ||||||||||||||||||||||||||||||||| |||||||| | | |||||||||||||| |||||||| |||| ||||| || || |||||||||||    
T  18375450 ttttaattgcatgatttatttgttcacttccta-ttttcagccacacctccttgaattgtggcaaatagtgcattgtgattgaccgcactttattcttg 18375547  T

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Target: chr4; HSP #2
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 24683216 - 24683118
Alignment:
Q  1 ttttaattgcatgatttatttgttcacttcctatttttcagctatatctccttgaattgtgacaaatagtacattatgattaactgctctttattcttg 99  Q
    |||||||||||||||||||||||||||||||||||||||||  | | || | ||||||||| |||||||| |||| |||||  ||||||||||||||||    
T  24683216 ttttaattgcatgatttatttgttcacttcctatttttcagtcacaccttcctgaattgtggcaaatagtgcattgtgattggctgctctttattcttg 24683118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 4512222 - 4512309
Alignment:
Q  1 ttttaattgcatgatttatttgttcacttcctatttttcagctatatctccttgaattgtgacaaatagtacattatgattaactgct 88  Q
    |||||||||||| ||||||||||| ||||||||||||||||  | |||||||||||||||| ||||||||| ||| ||||| ||||||    
T  4512222 ttttaattgcatcatttatttgtttacttcctatttttcagtcacatctccttgaattgtggcaaatagtatattgtgattgactgct 4512309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 41633356 - 41633259
Alignment:
Q  1 ttttaattgcatgatttatttgttcacttcctatttttcagctatatctccttgaattgtgacaaatagtacattatgattaactgctctttattcttg 99  Q
    |||||||| ||| ||||||||||||||||||||||||||||| | | |||||||||||||| ||| |||| |||| |||||  ||||||||||||||||    
T  41633356 ttttaattacat-atttatttgttcacttcctatttttcagccacacctccttgaattgtggcaagtagtgcattgtgattggctgctctttattcttg 41633259  T

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Target: chr4; HSP #5
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 11 - 99
Target Start/End: Original strand, 26179279 - 26179367
Alignment:
Q  11 atgatttatttgttcacttcctatttttcagctatatctccttgaattgtgacaaatagtacattatgattaactgctctttattcttg 99  Q
    |||||||||||||||||||||||||||||||| | | ||||||||||||||  ||||||| || | |||||  ||||||||||||||||    
T  26179279 atgatttatttgttcacttcctatttttcagccacacctccttgaattgtgttaaatagtgcactgtgattggctgctctttattcttg 26179367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 54358252 - 54358172
Alignment:
Q  1 ttttaattgcatgatttatttgttcacttcctatttttcagctatatctccttgaattgtgacaaatagtacattatgatt 81  Q
    |||||||||||||||||||||||||||||||||||||||||| | | | |||| ||||||| |||||||| |||| |||||    
T  54358252 ttttaattgcatgatttatttgttcacttcctatttttcagccacacccccttaaattgtggcaaatagtgcattgtgatt 54358172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 37674059 - 37674157
Alignment:
Q  1 ttttaattgcatgatttatttgttcacttcctatttttcagctatatctccttgaattgtgacaaatagtacattatgattaactgctctttattcttg 99  Q
    |||||||||||||||||||||||| ||||  ||||||||||| | | ||| |||||||||   |||||||||||| ||||| ||||||||||| |||||    
T  37674059 ttttaattgcatgatttatttgttaactttttatttttcagccacacctctttgaattgtagtaaatagtacattgtgattgactgctctttagtcttg 37674157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 2 - 99
Target Start/End: Original strand, 47839002 - 47839099
Alignment:
Q  2 tttaattgcatgatttatttgttcacttcctatttttcagctatatctccttgaattgtgacaaatagtacattatgattaactgctctttattcttg 99  Q
    |||||||||||||| | |||||||| || ||||||||| || | | |||||| ||||||| ||||||||||||| || || |||||||||||||||||    
T  47839002 tttaattgcatgatgtttttgttcattttctatttttcggccacacctccttaaattgtggcaaatagtacattgtggttgactgctctttattcttg 47839099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 47281591 - 47281630
Alignment:
Q  1 ttttaattgcatgatttatttgttcacttcctatttttca 40  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  47281591 ttttaattgcatgatttatttgttcacttcctatttttca 47281630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 98
Target Start/End: Original strand, 23348172 - 23348272
Alignment:
Q  1 ttttaattgcatgatttatttgttcact---tcctatttttcagctatatctccttgaattgtgacaaatagtacattatgattaactgctctttattct 97  Q
    ||||||||||||||||||||||||||||   |||||||||||||| | | ||||||||||| ||  |||||||  ||| ||||| | || ||||||||||    
T  23348172 ttttaattgcatgatttatttgttcacttcctcctatttttcagccacacctccttgaattatggtaaatagtgtattgtgattgagtgttctttattct 23348271  T
Q  98 t 98  Q
    |    
T  23348272 t 23348272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 41878656 - 41878615
Alignment:
Q  1 ttttaattgcatgatttatttgttcacttcctatttttcagc 42  Q
    |||||||||||||||||||||||| |||||||||||||||||    
T  41878656 ttttaattgcatgatttatttgtttacttcctatttttcagc 41878615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 17847601 - 17847661
Alignment:
Q  1 ttttaattgcatgatttatttgttcacttcctatttttcagctatatctccttgaattgtg 61  Q
    ||||||||||||||||||||||||||||| ||||||||| |  | | ||||||||||||||    
T  17847601 ttttaattgcatgatttatttgttcactttctatttttctgtcacacctccttgaattgtg 17847661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 6 - 99
Target Start/End: Complemental strand, 30509076 - 30508984
Alignment:
Q  6 attgcatgatttatttgttcacttcctatttttcagctatatctccttgaattgtgacaaatagtacattatgattaactgctctttattcttg 99  Q
    ||||||||| ||||| ||||| |||||||||||||| || |||||  || |||| | ||||||||  ||| | ||| |||||||||||||||||    
T  30509076 attgcatgacttatt-gttcatttcctatttttcagttacatctctgtgtattgcggcaaatagtgtattgtaattgactgctctttattcttg 30508984  T

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Target: scaffold0071 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0071
Description:

Target: scaffold0071; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 41
Target Start/End: Original strand, 512 - 551
Alignment:
Q  2 tttaattgcatgatttatttgttcacttcctatttttcag 41  Q
    ||||| ||||||||||||||||||||||| ||||||||||    
T  512 tttaactgcatgatttatttgttcacttcttatttttcag 551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0132 (Bit Score: 30; Significance: 0.00000007; HSPs: 2)
Name: scaffold0132
Description:

Target: scaffold0132; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 34 - 99
Target Start/End: Complemental strand, 642 - 578
Alignment:
Q  34 tttttcagctatatctccttgaattgtgacaaatagtacattatgattaactgctctttattcttg 99  Q
    ||||||||| | | |||||| ||||||| |||||||| |||| ||||| |||||||||||||||||    
T  642 tttttcagccacacctccttaaattgtg-caaatagtgcattgtgattgactgctctttattcttg 578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0132; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 34 - 99
Target Start/End: Complemental strand, 8602 - 8538
Alignment:
Q  34 tttttcagctatatctccttgaattgtgacaaatagtacattatgattaactgctctttattcttg 99  Q
    ||||||||| | | |||||| ||||||| |||||||| |||| ||||| |||||||||||||||||    
T  8602 tttttcagccacacctccttaaattgtg-caaatagtgcattgtgattgactgctctttattcttg 8538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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