View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17288_high_1 (Length: 851)
Name: NF17288_high_1
Description: NF17288
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17288_high_1 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 755; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 755; E-Value: 0
Query Start/End: Original strand, 6 - 836
Target Start/End: Original strand, 8284698 - 8285528
Alignment:
| Q |
6 |
aatgctaatgatgggatggcggtgttttctaattcacccgcggtgtccgtgaaccaaaaccaagttgatgcttattttcgcatccctactgaaaccgatt |
105 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||| || || ||||||||||||||||||||||||||||||| | |||||||| |||||||| |
|
|
| T |
8284698 |
aatgctaatgatgggatggtggtgttttctaattcacccgcagtctcggtgaaccaaaaccaagttgatgcttattttcaaacccctactggaaccgatt |
8284797 |
T |
|
| Q |
106 |
tacaactacctacacccccatttttctctttccctgtggagaatcatattaatgaagtagtgcctaatgccatgacaccaccacataggtttaatcactt |
205 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8284798 |
tacaactacctacacccccatttttctctttccctgtgcagaatcatattaatgaagtagtgcctaatgccatgacaccaccacataggtttaatcactt |
8284897 |
T |
|
| Q |
206 |
atctggtttcatgaactatggaagtgaaaatggaaactcctcaatggttcaacccttacctcaacagaatgttgatgtacctctagttaatcatgagatc |
305 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8284898 |
atctggtttcatgaactatggaagtgaaaatggaaactcctcaatggttcaacccttacctcaacagaatgttgatgtacctctagttaatcatgagatc |
8284997 |
T |
|
| Q |
306 |
accatgaactatggaagtaaaagtggaattgcctcaatgaatcaccgatatgatcaagagaagattcaagaggaagcaatgaatatgattcacatgtacc |
405 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8284998 |
accatgaactatggaagtaaaagtggaattgcctcaatgaatcaccgatatgatcaagagaagattcaagaggaagcaatgaatatgattcacatgtacc |
8285097 |
T |
|
| Q |
406 |
agcaagacccacaacttaattttggtgttgctacaacatcaagcaatgatgatgagtcagttgatcttgctcctcttcctcctactaccattggtgcacc |
505 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8285098 |
agcaagacccacaacttaattttggtgttgctacaacatcaagcaatgatgatgagtcagttgatcttgctcctcttcctcctactaccattggtgcacc |
8285197 |
T |
|
| Q |
506 |
tgatgctgttccattccccattattgatcatcgacatcaaggtaatcatcatcaagcgttacaaaactaatgattgaactcgagttgttattagttctaa |
605 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||| ||| ||||||||| |
|
|
| T |
8285198 |
tgatgctgttccattccccattattgatcatcgacatcaaggtaatcaatatcaagttttacaaaactaatgattgaactcgagtcattaatagttctaa |
8285297 |
T |
|
| Q |
606 |
ttaaagatgaattgtttaaaacaaattgagtttaaattttagttggaacattttttctattagacttgccttttgattaagccaaactcgaaattaccaa |
705 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8285298 |
ttaaagatgaattgtttaaaacaaattgagtttaaattttagttggaacattttttctattagacttgccttttgattaagccaaactcgaaattaccaa |
8285397 |
T |
|
| Q |
706 |
gcctctttctgagaatcagacagttaaaacaacaaaaatatatcaatttttacatataatgctcccttaaaaacttgcacatatatatgcacccaaaatt |
805 |
Q |
| |
|
||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8285398 |
gccgctttctgagaatcagacagtttaaacaacaaaaatatatcaatttttacatatattgctcccttaaaaacttgcacatatatatgcacccaaaatt |
8285497 |
T |
|
| Q |
806 |
taaagcaccgggtatgatttcgtttaattat |
836 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
8285498 |
taaagcaccgggtatgatttcgtttaattat |
8285528 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 60; Significance: 4e-25; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 358 - 487
Target Start/End: Original strand, 34687150 - 34687276
Alignment:
| Q |
358 |
atcaagagaagattcaagaggaagcaatgaatatgattcacatgtaccagcaagacccacaacttaattttggtgttgctacaacatcaagcaatgatga |
457 |
Q |
| |
|
|||||||||| |||||||||||||| ||||||||||| |||||| |||| |||||||||||| ||||||||||||| | ||||| ||||| |||||||| |
|
|
| T |
34687150 |
atcaagagaatattcaagaggaagcgatgaatatgatgcacatgcaccaacaagacccacaatttaattttggtgtcacgacaacttcaagtaatgatga |
34687249 |
T |
|
| Q |
458 |
tgagtcagttgatcttgctcctcttcctcc |
487 |
Q |
| |
|
| ||| ||||||||||||||| ||||| |
|
|
| T |
34687250 |
t---tcaactgatcttgctcctctacctcc |
34687276 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 261 - 487
Target Start/End: Original strand, 34694979 - 34695205
Alignment:
| Q |
261 |
ttacctcaacagaatgttgatgtacctctagttaatcatgagatcaccatgaactatggaagtaaaagtggaattgcctcaatgaatcaccgatatgatc |
360 |
Q |
| |
|
||||||||| | ||||||||| | |||||| ||||| |||| | || |||||||||||||| |||| |||||| |||||| ||| ||| | ||||| |
|
|
| T |
34694979 |
ttacctcaagaaaatgttgatctgcctctacttaattatgataacatcatgaactatggaaacaaaaatggaatctgctcaatcaatgacctttttgatc |
34695078 |
T |
|
| Q |
361 |
aagagaagattcaagaggaagcaatgaatatgattcacatgtaccagcaagacccacaacttaattttggtgttgctacaacatcaagcaatgatgatga |
460 |
Q |
| |
|
||||||| ||||||||||| | || ||||||| || ||| | || |||||||||||||||||||||||||| | ||| | ||||| ||||||||| | |
|
|
| T |
34695079 |
aagagaatattcaagaggagtcgattcatatgatgcatatgcatcaacaagacccacaacttaattttggtgtcacgacagcttcaagtaatgatgatca |
34695178 |
T |
|
| Q |
461 |
gtcagttgatcttgctcctcttcctcc |
487 |
Q |
| |
|
||| ||||||||||||||| ||||| |
|
|
| T |
34695179 |
ttcaactgatcttgctcctctccctcc |
34695205 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 11 - 214
Target Start/End: Original strand, 34694753 - 34694959
Alignment:
| Q |
11 |
taatgatgggatggcggtgttttctaattcacccgcggtgtccgtgaaccaaaaccaagttgatgcttattttcgcatccctactgaaaccgatttacaa |
110 |
Q |
| |
|
|||||||||||||| | || | ||||||||||||| | || |||||||||| |||| |||| ||||| || || || |||| ||||| | ||||| |
|
|
| T |
34694753 |
taatgatgggatggtgatggtgcctaattcacccgcaatatctctgaaccaaaatcaagatgatacttatcctcacaccctcactggaaccggtctacaa |
34694852 |
T |
|
| Q |
111 |
ctacctacacccccatttttctctttccctgtggagaatcatattaatgaa---gtagtgcctaatgccatgacaccaccacataggtttaatcacttat |
207 |
Q |
| |
|
||||||||||||||||||| ||||||||| || ||||||||||||||| || ||||||| ||||| ||||| | | ||| | |||||||| |||| | |
|
|
| T |
34694853 |
ctacctacacccccattttcctctttcccggttgagaatcatattaataaaagggtagtgcttaatgacatgataacgccagaggggtttaattacttct |
34694952 |
T |
|
| Q |
208 |
ctggttt |
214 |
Q |
| |
|
||||||| |
|
|
| T |
34694953 |
ctggttt |
34694959 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 94 - 182
Target Start/End: Original strand, 34686910 - 34687001
Alignment:
| Q |
94 |
ctgaaaccgatttacaactacctacacccccatttttctctttccctgtggagaatcatattaatgaa---gtagtgcctaatgccatgaca |
182 |
Q |
| |
|
||||||||| | ||||||||||||||||||||||| ||||||||| || |||||||||||||||||| ||||||| ||||| ||||||| |
|
|
| T |
34686910 |
ctgaaaccggtctacaactacctacacccccatttccctctttcccggttgagaatcatattaatgaaagggtagtgcttaatgacatgaca |
34687001 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University