View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17288_high_12 (Length: 570)
Name: NF17288_high_12
Description: NF17288
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17288_high_12 |
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Alignment Details
Target: chr1 (Bit Score: 523; Significance: 0; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 523; E-Value: 0
Query Start/End: Original strand, 18 - 560
Target Start/End: Complemental strand, 28606478 - 28605937
Alignment:
| Q |
18 |
atagtctgtggaccaaattcgtgcaatgtactcttccaaccgagtgtgctcctaattgaatcaaagtgaccaacgtaatgttaaattgtaaacaaaaata |
117 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28606478 |
atagtctgtggaccaaattcatgcaatgtactcttccaaccgagtgtgctcctaattgaatcaaagtgaccaacgtaatgttaaattgtaaacaaaaata |
28606379 |
T |
|
| Q |
118 |
ttccatgactcccacacttacaaaaataattattttacattaaaaattgtgttattgcatatagttaaatttaaccacattttcgaacatgattaaccat |
217 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28606378 |
ttccatgactcccacacttacaaaaa-aattattttacattaaaaattgtgttattgcatatagttaaatttaaccacattttcgaacatgattaaccat |
28606280 |
T |
|
| Q |
218 |
tgtcacagataagtgtataaaaagtggatgtccatgtattattaatgtaataaaaggtgcttatgaattatgttttacgtttgactattgaaattttaaa |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
28606279 |
tgtcacagataagtgtataaaaagtggatgtccatgtattattaatgtaatgaaaggtgcttatgaattatgttttacgtttgacttttgaaattttaaa |
28606180 |
T |
|
| Q |
318 |
gtaatagtaagtgtgttaatgtaattggaacggttttcagtggatgtgtaacagaaataacagaaagcaattagccaattaaagagaatatttggtacct |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28606179 |
gtaatagtaagtgtgttaatgtaattggaacggttttcagtggatgtgtaacagaaataacagaaagcaattagccaattaaagagaatatttggtacct |
28606080 |
T |
|
| Q |
418 |
aaaagagcaaccgtggcttcaacgtcaatgccaatggcttgaaaactagaaagcactgaggatattgagtcattatgatttggaatgaattgttccacca |
517 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28606079 |
aaaagagcaaccgtggcttcaacgtcaatgccaatggcttgaaaactagaaagcactgaggatattgagtcattatgatttggaatgaattgttccacca |
28605980 |
T |
|
| Q |
518 |
cctttacatagctttctttgctatcctttcgtccactcttcat |
560 |
Q |
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| T |
28605979 |
cctttacatagctttctttgctatcctttcgtccactcttcat |
28605937 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 402 - 560
Target Start/End: Complemental strand, 28636005 - 28635847
Alignment:
| Q |
402 |
agaatatttggtacctaaaagagcaaccgtggcttcaacgtcaatgccaatggcttgaaaactagaaagcactgaggatattgagtcattatgatttgga |
501 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||| || || |||||||||| ||| | |||| ||||||||||||||||||| |||||| |
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| T |
28636005 |
agaatgtttggtacctaaaagagcaaccgtggcttcaacgtcaacaccgatagcttgaaaacgagacaacactaaggatattgagtcattatggtttgga |
28635906 |
T |
|
| Q |
502 |
atgaattgttccaccacctttacatagctttctttgctatcctttcgtccactcttcat |
560 |
Q |
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||||||| ||||||||| ||| |||| ||||||||||||||| ||| |||||||||||| |
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| T |
28635905 |
atgaattcttccaccacatttgcataactttctttgctatcccttcttccactcttcat |
28635847 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 402 - 560
Target Start/End: Complemental strand, 28656512 - 28656354
Alignment:
| Q |
402 |
agaatatttggtacctaaaagagcaaccgtggcttcaacgtcaatgccaatggcttgaaaactagaaagcactgaggatattgagtcattatgatttgga |
501 |
Q |
| |
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||||| ||||||||||||||||||||||||||||||||| |||| ||||| ||||| |||| || |||||| |||| || ||| ||||||| ||||| |
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| T |
28656512 |
agaatgtttggtacctaaaagagcaaccgtggcttcaacatcaacaccaatagcttggaaacgagtgagcactaaggacatggaggcattatggcttgga |
28656413 |
T |
|
| Q |
502 |
atgaattgttccaccacctttacatagctttctttgctatcctttcgtccactcttcat |
560 |
Q |
| |
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||| ||| |||||||||| ||||||||||||||||||||||| ||| |||||||||||| |
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| T |
28656412 |
atggattcttccaccaccgttacatagctttctttgctatcccttcttccactcttcat |
28656354 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 412 - 560
Target Start/End: Complemental strand, 28663542 - 28663394
Alignment:
| Q |
412 |
gtacctaaaagagcaaccgtggcttcaacgtcaatgccaatggcttgaaaactagaaagcactgaggatattgagtcattatgatttggaatgaattgtt |
511 |
Q |
| |
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||||||||||||||||| || ||||||||||| | |||||||||||||||| |||||||||| ||||||| ||||||||||||||||||||||||| || |
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| T |
28663542 |
gtacctaaaagagcaacagttgcttcaacgtctacaccaatggcttgaaaacgagaaagcactaaggatatggagtcattatgatttggaatgaattctt |
28663443 |
T |
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| Q |
512 |
ccaccacctttacatagctttctttgctatcctttcgtccactcttcat |
560 |
Q |
| |
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| |||| |||||| ||||||||||| |||| ||||||| ||||||| |
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| T |
28663442 |
ctaccattgttacatggctttctttgccatcccttcgtcctgtcttcat |
28663394 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 18 - 89
Target Start/End: Complemental strand, 28636263 - 28636192
Alignment:
| Q |
18 |
atagtctgtggaccaaattcgtgcaatgtactcttccaaccgagtgtgctcctaattgaatcaaagtgacca |
89 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||| |||||||||||| ||| |||||||||||||| |
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| T |
28636263 |
atagtctgtggaccaaattcatgcaatgtactcttccaactgagtgtgctcctgatttaatcaaagtgacca |
28636192 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 18 - 90
Target Start/End: Complemental strand, 28663833 - 28663761
Alignment:
| Q |
18 |
atagtctgtggaccaaattcgtgcaatgtactcttccaaccgagtgtgctcctaattgaatcaaagtgaccaa |
90 |
Q |
| |
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||||||| ||||||| |||| |||||||||||||||| || |||||| ||||| ||||||||||||||||||| |
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| T |
28663833 |
atagtctatggaccatattcatgcaatgtactcttcccactgagtgtcctcctgattgaatcaaagtgaccaa |
28663761 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 18 - 90
Target Start/End: Complemental strand, 28656757 - 28656685
Alignment:
| Q |
18 |
atagtctgtggaccaaattcgtgcaatgtactcttccaaccgagtgtgctcctaattgaatcaaagtgaccaa |
90 |
Q |
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||||||||||||||| ||| |||| ||||||||||| || || ||||||||| ||| ||||| ||||||||| |
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| T |
28656757 |
atagtctgtggaccatatttatgcagtgtactcttcccactgaatgtgctcctgattcaatcatagtgaccaa |
28656685 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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