View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17288_high_15 (Length: 546)
Name: NF17288_high_15
Description: NF17288
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17288_high_15 |
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Alignment Details
Target: chr7 (Bit Score: 475; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 475; E-Value: 0
Query Start/End: Original strand, 21 - 536
Target Start/End: Complemental strand, 38937418 - 38936903
Alignment:
| Q |
21 |
gttagacctttcaggaaaccatttctctggtccaattccaccaaccatttggaatctcacaaacataacagtcataaatcnnnnnnncaacaacctctct |
120 |
Q |
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| T |
38937418 |
gttagacctttcaggaaaccacttctctggtccaattccatcaaccatatggaatctcacaaacataaccgtcataaatcttttcttcaacaacctctct |
38937319 |
T |
|
| Q |
121 |
ggtaacattccagtggatattggaaacttaacctcactgcaaacttttgatgtcaacaataataacttggatggagaattgccacgcacaatttctcatc |
220 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38937318 |
ggtaacattccagtggatattggaaacttaacctcactgcaaacttttgatgtcaacaataataacttggatggagaattgccacgcacaatttctcatc |
38937219 |
T |
|
| Q |
221 |
taacttccttaacttatttttccgtgttcaccaataacttctcaggtaacatttccagagactttggaaagaatagtccttctttgactcatgtctactt |
320 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38937218 |
taacttccttaacttatttttccgtgttcaccaataacttctcaggtaacatttccagagactttggaaagaatagtccttctttgactcatgtctactt |
38937119 |
T |
|
| Q |
321 |
ttcaaacaatagtttctcaggagaacttccttctgacatgtgcaatggcctaaaactacttgttttggcagtaaataacaacagcttttcagggtcattg |
420 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38937118 |
ttcaaacaatagtttctcaggagaacttccttctgacatgtgcaatggcctaaaactacttgttttggcagtaaataacaacagcttttcagggtcattg |
38937019 |
T |
|
| Q |
421 |
ccgaaatctttgagaaattgttcatcttttataagaattaggcttgacgataaccagttcaatggaaatatcacagaagcatttgggattcatccaaatc |
520 |
Q |
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| T |
38937018 |
ccgaaatctttgagaaattgttcatcttttataagaattaggcttgatgataaccagttcaatggaaatatcacagaagcatttgggattcatccaaatc |
38936919 |
T |
|
| Q |
521 |
ttagtttcatctcact |
536 |
Q |
| |
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|||||||||||||||| |
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| T |
38936918 |
ttagtttcatctcact |
38936903 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 312; E-Value: 1e-175
Query Start/End: Original strand, 21 - 533
Target Start/End: Original strand, 39305534 - 39306046
Alignment:
| Q |
21 |
gttagacctttcaggaaaccatttctctggtccaattccaccaaccatttggaatctcacaaacataacagtcataaatcnnnnnnncaacaacctctct |
120 |
Q |
| |
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||||||||||||||||||||| |||||||||||||||||| ||||||| |||||||||||||||||||| |||||||||| ||||||||||||| |
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| T |
39305534 |
gttagacctttcaggaaaccacttctctggtccaattccatcaaccatatggaatctcacaaacataaccgtcataaatcttttcttcaacaacctctct |
39305633 |
T |
|
| Q |
121 |
ggtaacattccagtggatattggaaacttaacctcactgcaaacttttgatgtcaacaataataacttggatggagaattgccacgcacaatttctcatc |
220 |
Q |
| |
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|| || |||||| ||||||||||||||||||| |||||||||| |||||||||| |||||||||||||||| |||||||||||| ||||||| |||||| |
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| T |
39305634 |
ggaaatattccaatggatattggaaacttaacttcactgcaaatttttgatgtcgacaataataacttggaaggagaattgccagacacaattgctcatc |
39305733 |
T |
|
| Q |
221 |
taacttccttaacttatttttccgtgttcaccaataacttctcaggtaacatttccagagactttggaaagaatagtccttctttgactcatgtctactt |
320 |
Q |
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||||| ||||||||| |||||| ||||||||||||||||||||||| | |||||||||||| ||||||||||| |||||||||||||||||||||||||| |
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| T |
39305734 |
taactgccttaacttctttttctgtgttcaccaataacttctcaggaagcatttccagagattttggaaagaacagtccttctttgactcatgtctactt |
39305833 |
T |
|
| Q |
321 |
ttcaaacaatagtttctcaggagaacttccttctgacatgtgcaatggcctaaaactacttgttttggcagtaaataacaacagcttttcagggtcattg |
420 |
Q |
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|||||||||||||||||||||||||||||||||||| | |||| ||||| || ||| |||||||||| ||||||||||||||||||||||| |||||| |
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| T |
39305834 |
ttcaaacaatagtttctcaggagaacttccttctgaattatgcagtggccacaatctagttgttttggccgtaaataacaacagcttttcaggatcattg |
39305933 |
T |
|
| Q |
421 |
ccgaaatctttgagaaattgttcatcttttataagaattaggcttgacgataaccagttcaatggaaatatcacagaagcatttgggattcatccaaatc |
520 |
Q |
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|| || || ||||||||||||||||| || | |||| |||||||||| |||||| |||||| |||||| ||||||||| |||||||||||||| |||||| |
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| T |
39305934 |
ccaaactccttgagaaattgttcatccttaacaagagttaggcttgatgataacaagttcagtggaaacatcacagaatcatttgggattcatacaaatc |
39306033 |
T |
|
| Q |
521 |
ttagtttcatctc |
533 |
Q |
| |
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||| ||||||||| |
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|
| T |
39306034 |
ttattttcatctc |
39306046 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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