View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17288_high_17 (Length: 525)
Name: NF17288_high_17
Description: NF17288
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17288_high_17 |
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Alignment Details
Target: chr7 (Bit Score: 269; Significance: 1e-150; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 229 - 509
Target Start/End: Complemental strand, 18217407 - 18217127
Alignment:
| Q |
229 |
tcacatttttcttcttggtgacaaaatccaaaggagcatcatcattattcccaaaatctttggctccattcaagctaagtctcccttttgaattcagatt |
328 |
Q |
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| T |
18217407 |
tcacatttttcttcttggtgacaaaatccaaaggggcatcatcattattcccaaaatctttggctccattcaagctaagtctcccttttgaattcagatt |
18217308 |
T |
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| Q |
329 |
agatggattaaaatcatgtggagcaatcattcccgccgttacagagggccccacttgccaaacatggttaatggcggtaacatcaaccggaaccttaacg |
428 |
Q |
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| T |
18217307 |
agatggattaaaatcatgtggagcaatcattcccgccgttacagagggccccacttgccaaacatggttaatggcggtaacattaaccggaaccttaacg |
18217208 |
T |
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| Q |
429 |
gtagcaaaaatcttcattaaaccaccagcttcctcggctttcatatcccaaacatcaaaagaaagcttcccaggaataaaa |
509 |
Q |
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| T |
18217207 |
gtagcaaaaatcttcattaaaccaccatcttcctcggctttcatatcccaaacatcaaaagaaagcttcccaggaataaaa |
18217127 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 1 - 145
Target Start/End: Complemental strand, 18217635 - 18217491
Alignment:
| Q |
1 |
atagttggcaaccaatatgaatatagaaccaagccggatccgccgatggaaaaattttcatatatcttgctatgataactccaaggggaaacaaaatacc |
100 |
Q |
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| T |
18217635 |
atagttggcaaccaatatgaatatagaaccaagccggatccgccgatggaaaaattttcatatatcttgctatgataactccaaggggaaacaaaatacc |
18217536 |
T |
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| Q |
101 |
ccaactcactatatttagtactccatgaatctgtcatcattcaac |
145 |
Q |
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| T |
18217535 |
ccaactcactatatttagtactccatgaatctgtcatcattcaac |
18217491 |
T |
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