View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17288_high_19 (Length: 507)
Name: NF17288_high_19
Description: NF17288
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17288_high_19 |
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Alignment Details
Target: chr2 (Bit Score: 395; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 12 - 490
Target Start/End: Complemental strand, 8921343 - 8920856
Alignment:
| Q |
12 |
ttgacggggattagattcattcaactttaggtctttactcacatgcagtgttgctttctatagtgcctgcgccagattgtgtctcttgaagtggagagag |
111 |
Q |
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| T |
8921343 |
ttgacggggattagattcattcaactttaggtctttactcacatgcagtgttgctttctatagtgcctgcgccagattgtgtctcatgaagtggagagag |
8921244 |
T |
|
| Q |
112 |
ataattagtggaggtaattaaatagttaaccgagagattttagagtacttgtgatcactatctcattcgtttaagaattgaattatacttgtcattaggg |
211 |
Q |
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| T |
8921243 |
ataattagtggaggtaattaaatagttaaccgagagattttagagtacttgtgatcactatctcattcgtttaagaattgaattatacttgtcattagag |
8921144 |
T |
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| Q |
212 |
atacattacctttaattcagcaaggtgtaatgcatgtctcacctattttacctcaatcgccttgataaataaggtcacagcataaataacctgtt----- |
306 |
Q |
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| T |
8921143 |
atacattacctttaattcatcaaggtgtaatgcatatctcacctattttacctcaatcgccttg----ataaggtcacagcataaataacctgttgctct |
8921048 |
T |
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| Q |
307 |
--------attaattcatatatagcaacgcaaaacttaattaattttctcactctttttcttttccaatgtcatgccaacaaaacaattgttccagggat |
398 |
Q |
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| T |
8921047 |
aaattatgattaattcatatatagctacgcatgccttaattaattttctcactctttttcttttccaatgtcatgccaacaaaacaattgttccagggat |
8920948 |
T |
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| Q |
399 |
gattaatttagttggttgaactaaaagattaaaggaggtaagaagtaaaagtttagaattcaaatacaaataaagtagaaaaatattaacat |
490 |
Q |
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| T |
8920947 |
gattaatttagttcgttgaactaaaagattaaaggaggtaagaagtaaaagtttagaattcaaatacaaataaagtagaaaaatattaacat |
8920856 |
T |
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