View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17288_high_2 (Length: 789)
Name: NF17288_high_2
Description: NF17288
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17288_high_2 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 227; Significance: 1e-125; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 484 - 773
Target Start/End: Complemental strand, 38207330 - 38207044
Alignment:
| Q |
484 |
gtgtgtgttgaagatattgttacaaaatttctggaaaatgagcatgggttcacaagtattactgaaaagttacactctttatttcatttttattattann |
583 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
38207330 |
gtgtgtgttgaagatattgttacaaaatttctggaaaatgagcatgggttcacaagtattacttaaaagttacactctttatttcatttttattatt--- |
38207234 |
T |
|
| Q |
584 |
nnnnnnnnnnnnnnncaaatgctgcttaaaagataaattagctttatatttagttaatcctttgtataagttcattcctagatttttattagtcaccttt |
683 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38207233 |
ttttttttcttttttcaaatgctgcttaaaagataaattagctttatatttagttaatcctttgtataagttcattcctagatttttattagtcaccttt |
38207134 |
T |
|
| Q |
684 |
gtaattaattagttgcttgctgagtagtgtgtattaagcctactagacacttcttatagaaggtgtgtccgacacgacatacatgtgatt |
773 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38207133 |
gtaattaattagttgcttgctgagtagtgtgtattaagcctactagacacttcttatagaaggtgtgtccgacacgacatacatgtgatt |
38207044 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 195; E-Value: 1e-105
Query Start/End: Original strand, 14 - 212
Target Start/End: Complemental strand, 38207799 - 38207601
Alignment:
| Q |
14 |
cagagacagtacgtttttggcgtgagactgagtctgagtgtgctaaaaacactcttaaaactttccctctttcgtcttccactctttttcctttacactt |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38207799 |
cagagacagtacgtttttggcgtgagactgagtctgagtgtgctaaaaacactcttaaaactttccctctttcgtcttccactctttttcctttacactt |
38207700 |
T |
|
| Q |
114 |
catttcattctataaattgcaactccactacatttttctaaaccctaatttcattcatattcattcttcaacaataaaccttaaggtacattctcttgc |
212 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38207699 |
catttcattctataaattgctactccactacatttttctaaaccctaatttcattcatattcattcttcaacaataaaccttaaggtacattctcttgc |
38207601 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 279 - 404
Target Start/End: Complemental strand, 38207534 - 38207409
Alignment:
| Q |
279 |
cactaacactcgctttattctctcgctttcaatttcactccttcattcttgctttatcaaaatcaacgttattacaacagattaacagtagtaacatgcc |
378 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38207534 |
cactaacactcgctttattctctcgctttcaatttcactccttcattcttgctttatcaaaatcaacgttattacaacagattaacagtagtaacatgcc |
38207435 |
T |
|
| Q |
379 |
tctttttgcattatgctgctgaaaag |
404 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
38207434 |
tctttttgcattatgctgctgaaaag |
38207409 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University