View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17288_high_21 (Length: 499)

Name: NF17288_high_21
Description: NF17288
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17288_high_21
NF17288_high_21
[»] chr4 (1 HSPs)
chr4 (27-494)||(54423585-54424061)
[»] chr1 (6 HSPs)
chr1 (281-494)||(20127319-20127532)
chr1 (19-287)||(20120787-20121056)
chr1 (270-440)||(27645594-27645764)
chr1 (339-415)||(12461045-12461121)
chr1 (288-352)||(13190645-13190709)
chr1 (240-440)||(44137419-44137619)
[»] chr8 (2 HSPs)
chr8 (276-415)||(9182994-9183133)
chr8 (276-415)||(11625140-11625279)
[»] chr6 (3 HSPs)
chr6 (276-415)||(10161217-10161356)
chr6 (339-415)||(16860983-16861059)
chr6 (282-396)||(21740989-21741103)
[»] scaffold0703 (1 HSPs)
scaffold0703 (339-415)||(1937-2013)
[»] scaffold0010 (1 HSPs)
scaffold0010 (276-403)||(238965-239092)


Alignment Details
Target: chr4 (Bit Score: 383; Significance: 0; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 27 - 494
Target Start/End: Complemental strand, 54424061 - 54423585
Alignment:
Q  27 tttctacc-cagattttgggaagatatcggggatgaaatattctcttctgcctagtcttggttagctt--------cgagttatctacccc-agatttaa 116  Q
    |||||||| |||||||||| |||||||||| |||||||||||||||||||||| ||||||||||||||        ||||||||||||||| ||||||||    
T  54424061 tttctaccacagattttggaaagatatcggtgatgaaatattctcttctgcctcgtcttggttagctttgagacttcgagttatctacccccagatttaa 54423962  T
Q  117 atgctacaaacatagtgcttgcaccaaagggtgataatccg-aatccatgcgggaccttcgacctatttctctctgcaatgtgttatacaagatcgcgtt 215  Q
    ||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||    
T  54423961 atgctacaaacatagtgcttgcaccaaagggtgataatctggaatccatgcgggaccttcgacctatttctctctgcaatgtgttatacaagatcg--tt 54423864  T
Q  216 tctaaggtcctggtcaatcgtcttcgtccacttattaacaaatgaattttccaagaacaggcagcctttgtgcattctcgctcaatcatggataatgcgc 315  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54423863 tctaaggtcctggtcaatcgtcttcgtccacttattaacaaatggatttcccaagaacaggcagcctttgtgcattctcgctcaatcatggataatgcgc 54423764  T
Q  316 taacagcattcgaagttcttcatcatatgcgctgcaaaacaaaaggaaaaataggtgaggtggctctcaaacttgacatatccaaggcattcgatagtgt 415  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54423763 taacagcattcgaagttcttcatcatatgcgctgcaaaacaaaagaaaaaataggtgaggtggctctcaaacttgacatatccaaggcattcgatagtgt 54423664  T
Q  416 aaattggtcgtacctcaaagctattttatttaaaatggggttcagttcacagtggacttcctggatgatgatgtccatc 494  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  54423663 aaattggtcgtacctcaaagctattttatttaaaatggggttcagttcacagtggacttcctggatgatgatgtgcatc 54423585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 122; Significance: 2e-62; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 281 - 494
Target Start/End: Original strand, 20127319 - 20127532
Alignment:
Q  281 ctttgtgcattctcgctcaatcatggataatgcgctaacagcattcgaagttcttcatcatatgcgctgcaaaacaaaaggaaaaataggtgaggtggct 380  Q
    ||||||||||||||||||||||||||||||||||||||| || || ||||| || |||||||||||||||||||||||||| |||||||| ||||||||     
T  20127319 ctttgtgcattctcgctcaatcatggataatgcgctaaccgcttttgaagtcctccatcatatgcgctgcaaaacaaaagggaaaataggcgaggtggca 20127418  T
Q  381 ctcaaacttgacatatccaaggcattcgatagtgtaaattggtcgtacctcaaagctattttatttaaaatggggttcagttcacagtggacttcctgga 480  Q
    || |||||||| |||||||||||||| |||||||||| |||| | ||||||||| | ||| |  |||||||||| ||||||||||| ||||| |||||||    
T  20127419 ctaaaacttgatatatccaaggcatttgatagtgtaagttggccttacctcaaatccattctccttaaaatgggtttcagttcacaatggacctcctgga 20127518  T
Q  481 tgatgatgtccatc 494  Q
    ||||||||| ||||    
T  20127519 tgatgatgtgcatc 20127532  T

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Target: chr1; HSP #2
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 19 - 287
Target Start/End: Original strand, 20120787 - 20121056
Alignment:
Q  19 aacccggctttctaccc-agattttgggaagatatcggggatgaaatattctcttctgcctagtcttggttagcttcgagttatctacccc-agatttaa 116  Q
    ||||||||||||||||  || |||||||| || || ||||| ||||| ||||||| ||||| ||||||||| ||||| | || ||| |||| ||| ||||    
T  20120787 aacccggctttctaccataggttttgggaggacattggggacgaaattttctcttttgccttgtcttggttggcttcaacttctctgcccccagaattaa 20120886  T
Q  117 atgctacaaacatagtgcttgcaccaaagggtgataatccg-aatccatgcgggaccttcgacctatttctctctgcaatgtgttatacaagatcgcgtt 215  Q
    ||| |||||||||||| || || |||||||| || |||||| |||||||||| |||||||| |||||||||||||| |||||  | |||||||| |  |     
T  20120887 atgttacaaacatagttctcgctccaaagggagacaatccggaatccatgcgagaccttcggcctatttctctctgtaatgtactgtacaagattg--tc 20120984  T
Q  216 tctaaggtcctggtcaatcgtcttcgtccacttattaacaaatgaattttccaagaacaggcagcctttgtg 287  Q
    ||||||||||| | ||||||||| | |||| | || |||||||| |||| ||||||||| ||||||||||||    
T  20120985 tctaaggtccttgccaatcgtctccatccattaatcaacaaatggatttcccaagaacaagcagcctttgtg 20121056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 270 - 440
Target Start/End: Complemental strand, 27645764 - 27645594
Alignment:
Q  270 gaacaggcagcctttgtgcattctcgctcaatcatggataatgcgctaacagcattcgaagttcttcatcatatgcgctgcaaaacaaaaggaaaaatag 369  Q
    ||||||||||| || || || || ||||| ||||||||||||||  |||| || || ||| |  | |||||||||||||||||||| ||||| ||||| |    
T  27645764 gaacaggcagcattcgttcactcccgctctatcatggataatgctttaacggcctttgaaatcttacatcatatgcgctgcaaaaccaaaggtaaaattg 27645665  T
Q  370 gtgaggtggctctcaaacttgacatatccaaggcattcgatagtgtaaattggtcgtacctcaaagctatt 440  Q
    ||||||||||||| |||||||| || || ||||| || |||||||| |  |||| |||||| |||||||||    
T  27645664 gtgaggtggctctgaaacttgatatctctaaggcttttgatagtgttagctggttgtaccttaaagctatt 27645594  T

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Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 339 - 415
Target Start/End: Complemental strand, 12461121 - 12461045
Alignment:
Q  339 catatgcgctgcaaaacaaaaggaaaaataggtgaggtggctctcaaacttgacatatccaaggcattcgatagtgt 415  Q
    |||||||| || ||| |||||||||||| ||||||||| ||| | |||||||| |||||||| ||||| || |||||    
T  12461121 catatgcgttgtaaatcaaaaggaaaaaaaggtgaggttgctttgaaacttgatatatccaaagcatttgacagtgt 12461045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 288 - 352
Target Start/End: Complemental strand, 13190709 - 13190645
Alignment:
Q  288 cattctcgctcaatcatggataatgcgctaacagcattcgaagttcttcatcatatgcgctgcaa 352  Q
    |||||||| || ||||||||||||||  |||||||||| ||| ||||||| |||||||| |||||    
T  13190709 cattctcgttccatcatggataatgctttaacagcatttgaaattcttcaccatatgcggtgcaa 13190645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 240 - 440
Target Start/End: Original strand, 44137419 - 44137619
Alignment:
Q  240 cgtccacttattaacaaatgaattttccaagaacaggcagcctttgtgcattctcgctcaatcatggataatgcgctaacagcattcgaagttcttcatc 339  Q
    ||||| || ||||||||||| || |  | ||||||| | |||||||| || ||||| || ||||||||||| ||  ||||| |||| ||   ||| || |    
T  44137419 cgtcctctcattaacaaatggatctcaccagaacagtctgcctttgttcactctcgttctatcatggataacgctttaacaacatttgagactctccacc 44137518  T
Q  340 atatgcgctgcaaaacaaaaggaaaaataggtgaggtggctctcaaacttgacatatccaaggcattcgatagtgtaaattggtcgtacctcaaagctat 439  Q
    ||||||| |||||||  ||||||||||| ||||| || ||| | ||  | ||||| || ||||| || || ||||||| |||||| |||||  |||||||    
T  44137519 atatgcgttgcaaaaggaaaggaaaaattggtgaagttgctttgaagttagacatctctaaggcttttgacagtgtaagttggtcctaccttgaagctat 44137618  T
Q  440 t 440  Q
    |    
T  44137619 t 44137619  T

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Target: chr8 (Bit Score: 44; Significance: 8e-16; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 276 - 415
Target Start/End: Complemental strand, 9183133 - 9182994
Alignment:
Q  276 gcagcctttgtgcattctcgctcaatcatggataatgcgctaacagcattcgaagttcttcatcatatgcgctgcaaaacaaaaggaaaaataggtgagg 375  Q
    ||||| ||||||| |||||| || || |||||||| ||||| ||||| || ||| |||| ||| ||||||||||||| |  |||||||||  |||||| |    
T  9183133 gcagcgtttgtgccttctcgttcgataatggataacgcgctcacagcctttgaaattctacattatatgcgctgcaagaataaaggaaaacaaggtgatg 9183034  T
Q  376 tggctctcaaacttgacatatccaaggcattcgatagtgt 415  Q
    | ||||| ||||||||||| || ||||| || ||||||||    
T  9183033 tagctctaaaacttgacatttcgaaggcttttgatagtgt 9182994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 276 - 415
Target Start/End: Original strand, 11625140 - 11625279
Alignment:
Q  276 gcagcctttgtgcattctcgctcaatcatggataatgcgctaacagcattcgaagttcttcatcatatgcgctgcaaaacaaaaggaaaaataggtgagg 375  Q
    ||||| ||||||| |||||| || || |||||||| ||||| ||||| || ||| | || ||| ||||||||||||| |  |||||||||| |||||| |    
T  11625140 gcagcgtttgtgccttctcgttcgataatggataacgcgctcacagcctttgaaatactacattatatgcgctgcaagaataaaggaaaaaaaggtgatg 11625239  T
Q  376 tggctctcaaacttgacatatccaaggcattcgatagtgt 415  Q
    | ||||| ||||||||||| || ||||| || ||||||||    
T  11625240 tagctctaaaacttgacatttcgaaggcttttgatagtgt 11625279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 8e-16; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 276 - 415
Target Start/End: Complemental strand, 10161356 - 10161217
Alignment:
Q  276 gcagcctttgtgcattctcgctcaatcatggataatgcgctaacagcattcgaagttcttcatcatatgcgctgcaaaacaaaaggaaaaataggtgagg 375  Q
    ||||| ||||||| |||||| || || |||||||| ||||| ||||| || ||| |||| ||| ||||||||||||| |  |||||||||  |||||| |    
T  10161356 gcagcgtttgtgccttctcgttcgataatggataacgcgctcacagcctttgaaattctacattatatgcgctgcaagaataaaggaaaacaaggtgatg 10161257  T
Q  376 tggctctcaaacttgacatatccaaggcattcgatagtgt 415  Q
    | ||||| ||||||||||| || ||||| || ||||||||    
T  10161256 tagctctaaaacttgacatttcgaaggcttttgatagtgt 10161217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 339 - 415
Target Start/End: Original strand, 16860983 - 16861059
Alignment:
Q  339 catatgcgctgcaaaacaaaaggaaaaataggtgaggtggctctcaaacttgacatatccaaggcattcgatagtgt 415  Q
    |||||||| || ||| |||||||||||| ||||||||| ||| | ||||||||||||||||| ||||| || |||||    
T  16860983 catatgcgttgtaaatcaaaaggaaaaaaaggtgaggttgctttgaaacttgacatatccaaagcatttgacagtgt 16861059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 282 - 396
Target Start/End: Complemental strand, 21741103 - 21740989
Alignment:
Q  282 tttgtgcattctcgctcaatcatggataatgcgctaacagcattcgaagttcttcatcatatgcgctgcaaaacaaaaggaaaaataggtgaggtggctc 381  Q
    ||||| ||||||| ||| || ||||| ||||| || |  |||| |||| |||||||||||||||| || ||| | ||||| || | |||||||||||||     
T  21741103 tttgtccattctctctccattatggacaatgctctgatggcatacgaaattcttcatcatatgcgttgtaaatcgaaagggaagaaaggtgaggtggctt 21741004  T
Q  382 tcaaacttgacatat 396  Q
    | |||||||| ||||    
T  21741003 tgaaacttgatatat 21740989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0703 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0703
Description:

Target: scaffold0703; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 339 - 415
Target Start/End: Complemental strand, 2013 - 1937
Alignment:
Q  339 catatgcgctgcaaaacaaaaggaaaaataggtgaggtggctctcaaacttgacatatccaaggcattcgatagtgt 415  Q
    |||||||| || ||| |||||||||||| ||||||||| ||| | |||||||| |||||||| ||||| || |||||    
T  2013 catatgcgttgtaaatcaaaaggaaaaaaaggtgaggttgctttgaaacttgatatatccaaagcatttgacagtgt 1937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0010 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 276 - 403
Target Start/End: Complemental strand, 239092 - 238965
Alignment:
Q  276 gcagcctttgtgcattctcgctcaatcatggataatgcgctaacagcattcgaagttcttcatcatatgcgctgcaaaacaaaaggaaaaataggtgagg 375  Q
    ||||||||||| |  ||| | || |||||||||||||| ||| |||| || ||| |||||||   |||||| ||||| | |||||| ||||| || ||||    
T  239092 gcagcctttgttccatctagatccatcatggataatgctctatcagcctttgaaattcttcactttatgcgatgcaagaaaaaaggtaaaattggcgagg 238993  T
Q  376 tggctctcaaacttgacatatccaaggc 403  Q
    ||||| | || ||||| |||||||||||    
T  238992 tggctttaaagcttgatatatccaaggc 238965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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