View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17288_high_22 (Length: 496)
Name: NF17288_high_22
Description: NF17288
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17288_high_22 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 254; Significance: 1e-141; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 1 - 289
Target Start/End: Original strand, 38677399 - 38677685
Alignment:
| Q |
1 |
gaacactgatatcagaatcaaaagataaaaagtatcatcaagaaattaaaatacaacagtatgcaattcgtttacaatacccccaaaattgaagtgaaca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||| |
|
|
| T |
38677399 |
gaacactgatatcagaatcaaaagataaaaagtatcatcaagaaattaaaatacaacagtatgc--ttcatttacaatacccccaaaattgaagtgaaca |
38677496 |
T |
|
| Q |
101 |
atagcggcaagaaaggggattgcattgtggttttttaaaaatccttgcttaacttgcaactcaagaaatatataataatccgattaagagaaaatcaaag |
200 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38677497 |
atagccgcaagaaaggggattgcattgtggttttttaaaaatccttgcttaacttgcaactcaagaaatatataataatccgattaagagaaaatcaaag |
38677596 |
T |
|
| Q |
201 |
tgttttagaataatgaagcagggggccttttcaaaagtgaactagaatcatgaagcaaaatcttgatagtgtagaaaatattgtttaat |
289 |
Q |
| |
|
||||||||||||||||||||||||| |||||| |||||| |||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
38677597 |
tgttttagaataatgaagcagggggacttttccaaagtgtactagaatcatgcagcaaaatcttgatagtgtagaaaatattgtttaat |
38677685 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 289 - 480
Target Start/End: Original strand, 38677710 - 38677901
Alignment:
| Q |
289 |
tcttagtatgaataaccctcttggcataaacctcagtcattaaaaacgattgcaatagttaaataaaagtaatatttttaacctagttcacatgtgcaaa |
388 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38677710 |
tcttagtatgaataaccctcttggcataaacctcagtcattaaaaacgattgcaatagttaaataaaagtaatatttttaacctagttcacatgtgcaaa |
38677809 |
T |
|
| Q |
389 |
tttttgtgagatttaccactactttatcaaatagcacaagggttacattaatgataaaaatctcccaagtatttttggtcccctgtattact |
480 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38677810 |
tttttgtgagatttaccactactttatcaaatagcacaagggttacattaatgataaaaatctcccaagtatttttggtcccctgtattact |
38677901 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University