View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17288_high_24 (Length: 451)
Name: NF17288_high_24
Description: NF17288
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17288_high_24 |
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Alignment Details
Target: chr1 (Bit Score: 385; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 4 - 441
Target Start/End: Original strand, 2079932 - 2080369
Alignment:
| Q |
4 |
tgaatagttaagtcttgcattgactagaattagtgaaaatattgaatatacaggataagagatttatattacctaatatcttaaaattttaggttaaaaa |
103 |
Q |
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| T |
2079932 |
tgaatagttaagtcttgcattgactagaattaatgaaaatattgaatatacaagataagagatttatattacctaatatcttaagattttaggttaaaaa |
2080031 |
T |
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| Q |
104 |
atgataatcaactcacttacgtacttacttttgatctaatgtgaatgatttccgaagcctcatcgtgataaatttccnnnnnnncaaagcacaaagcata |
203 |
Q |
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| T |
2080032 |
atgataatcaactcacttacgtacttacttttgatataatgtgaatgatttccgaagcctcctcgtgataaatttcctttttttcaaagcacaaagcata |
2080131 |
T |
|
| Q |
204 |
tgattttattatgattttttagatggtgaagatgtttgattgaaccaattcatgacaataaggaatccatttctaagatgcaatcttgaaagatacagag |
303 |
Q |
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| T |
2080132 |
tgattttattatgattttttagatggtgaagatgtttgattgaaccaattcatgacaataaggaatccatttctaagatgcaatcttgaaagatacagaa |
2080231 |
T |
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| Q |
304 |
gtcggtaccgagtagcttgctgccattgttaatatatttctctgtcttttgattttgtagcaataatatcactgctctgaatgaacttcattttttgtct |
403 |
Q |
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| T |
2080232 |
gtcggtaccgagtagattgctgccattgttaatatatttctctgtcttttgattttgtagcaataatatcactgctctgaatgaacttcattttttgtct |
2080331 |
T |
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| Q |
404 |
gcacatatacaatggtccattttcactgcttccctatg |
441 |
Q |
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| T |
2080332 |
gcacatatataatggtccattttcactgcttccctatg |
2080369 |
T |
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