View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17288_high_25 (Length: 447)
Name: NF17288_high_25
Description: NF17288
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17288_high_25 |
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Alignment Details
Target: chr7 (Bit Score: 231; Significance: 1e-127; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 21 - 311
Target Start/End: Original strand, 31758197 - 31758480
Alignment:
| Q |
21 |
aaaggagcctagctatgtattattttatatta-tatgcgcattgtaatttacaaaactcaacttctacaaaatagagaagacattgtaattttcgttatg |
119 |
Q |
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| T |
31758197 |
aaaggagcctagctatgtattattttatattaatatgagcattctaatttacaaaactcaacttctacaaaatagagaagacattgtaattttcgttatg |
31758296 |
T |
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| Q |
120 |
tatttgaaaaagatgaaacattgtaaaatagccattcaattattttgatgtagtaaaatactcattctcatataatatgtagaagacattgaaatattgg |
219 |
Q |
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| T |
31758297 |
tatttgaaaaagatgaaacattttaaaatagccattcaattattttgatgtagtaaaatactcattctcata--------agaagacattgaaatattgg |
31758388 |
T |
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| Q |
220 |
aaagagtgggtatgggagaaataaaaccaacttgcactcttttaataccacttcatcaaaaacaaaagtattttggaccatattataagata |
311 |
Q |
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| T |
31758389 |
aaagagtgagtatgggggaaataaaaccaacttgcactcttttaataccacttcgtcaaaaacaaaagtattttggaccatattataagata |
31758480 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 311 - 438
Target Start/End: Original strand, 31758624 - 31758751
Alignment:
| Q |
311 |
agtagtaccaattattattaggatattgcattaatatttattatgaaatattggaaagagtgagtgtggggagagtgttcctcttcaatataaatgcaga |
410 |
Q |
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| T |
31758624 |
agtagtaccaattattattaggatattgcattaatatttattatgaaatattggaaagagtgagtatggggagagtgtttctcttcaatataaatgcaga |
31758723 |
T |
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| Q |
411 |
cataaataaaaccaacttgtatattctt |
438 |
Q |
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| T |
31758724 |
cataaataaaaccaacttgtattttctt |
31758751 |
T |
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