View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17288_high_27 (Length: 421)
Name: NF17288_high_27
Description: NF17288
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17288_high_27 |
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Alignment Details
Target: chr4 (Bit Score: 367; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 1 - 399
Target Start/End: Original strand, 53247148 - 53247546
Alignment:
| Q |
1 |
aaataacagttagttatatgttataggagtcaatgaaataaaagaaaataaaacaacttttaaaatacacctgattgtgggaagagccaaatattctaac |
100 |
Q |
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| T |
53247148 |
aaataacagttagttatatgttataggagtcaatgaaataaaagaaaacaaaacaacttttaaaatacacctgattgtgggaagagccaaatattctaac |
53247247 |
T |
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| Q |
101 |
accaactcttgaacactcttctgaccattattatgctgaccggagaactacagggagaaagtactgaacgagtgaggatatgataaaaattaagcagaaa |
200 |
Q |
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| T |
53247248 |
accaactcttgaacactcttctgaccattattatgctgaccggagaactacagagagagagtactgaacgagtgaggatatgataaaaattaagcagaaa |
53247347 |
T |
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| Q |
201 |
ctaaaagacatggttgacttacttgatttggtgaaatggcttgagcttgataaccttttgtgggagtgatttgtatggaattggaagcatgttgctgatt |
300 |
Q |
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| T |
53247348 |
ctaaaagacatagttgacttacttgatttggtggaatggcttgagcttgataaccttttgtgggagtgatttgtatggaattgggagcatgttgctgact |
53247447 |
T |
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| Q |
301 |
ggggatgctagcctgggtatactgccacaaatatggaacaaaccttttttactatgatgcaaaataacaaaagctgatactttttattttgaaatgctc |
399 |
Q |
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| T |
53247448 |
ggggatgctagcctgggtatactgccacaaatatggaacaaaccttttttactatgatgcaaaataacaaaagctgatactttttatttttaaatgctc |
53247546 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 340 - 399
Target Start/End: Complemental strand, 53255085 - 53255026
Alignment:
| Q |
340 |
aaaccttttttactatgatgcaaaataacaaaagctgatactttttattttgaaatgctc |
399 |
Q |
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|||||| |||||||||||| | ||||||||||||||||||||||| |||||||||||||| |
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| T |
53255085 |
aaacctgttttactatgattccaaataacaaaagctgatacttttcattttgaaatgctc |
53255026 |
T |
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